Wall clock time and date at job start Fri Apr 10 2020 18:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47091 * 2 1 4 4 N 1.46493 * 109.47542 * 180.02562 * 3 2 1 5 5 C 1.34819 * 126.59792 * 125.26596 * 4 3 2 6 6 C 1.36597 * 106.83661 * 180.10918 * 5 4 3 7 7 C 1.47528 * 125.76535 * 179.90222 * 6 5 4 8 8 O 1.21597 * 120.00275 * 6.77397 * 7 6 5 9 9 N 1.34776 * 119.99934 * 186.77515 * 7 6 5 10 10 C 1.46960 * 120.65347 * 356.13564 * 9 7 6 11 11 C 1.53191 * 108.88925 * 126.46549 * 10 9 7 12 12 C 1.53043 * 109.31307 * 54.55966 * 11 10 9 13 13 H 1.09002 * 109.45791 * 58.64973 * 12 11 10 14 14 N 1.46495 * 109.45055 * 178.62185 * 12 11 10 15 15 C 1.36938 * 120.00104 * 275.05527 * 14 12 11 16 16 H 1.08005 * 119.99741 * 0.02562 * 15 14 12 17 17 C 1.38806 * 120.00295 * 180.02562 * 15 14 12 18 18 N 1.31620 * 119.99782 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 120.00200 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47309 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47494 * 119.99897 * 19 17 15 22 22 H 1.48506 * 109.47148 * 239.99881 * 19 17 15 23 23 C 1.53041 * 109.53588 * 298.63458 * 12 11 10 24 24 C 1.46924 * 120.63324 * 175.95700 * 9 7 6 25 25 H 1.09003 * 109.58600 * 353.39343 * 24 9 7 26 26 C 1.52995 * 109.58848 * 113.67586 * 24 9 7 27 27 N 1.34399 * 108.46204 * 359.63946 * 6 5 4 28 28 N 1.28756 * 109.52303 * 0.22260 * 27 6 5 29 29 H 1.09003 * 109.47290 * 299.99750 * 1 2 3 30 30 H 1.08997 * 109.47441 * 60.00309 * 1 2 3 31 31 H 1.09002 * 109.46945 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47506 * 239.99790 * 2 1 3 33 33 H 1.09007 * 109.47399 * 119.99678 * 2 1 3 34 34 H 1.09003 * 109.47555 * 59.99734 * 3 2 1 35 35 H 1.09006 * 109.47261 * 300.00063 * 3 2 1 36 36 H 1.07992 * 126.58050 * 359.97438 * 5 4 3 37 37 H 1.09001 * 109.59767 * 6.61019 * 10 9 7 38 38 H 1.08998 * 109.46592 * 246.24936 * 10 9 7 39 39 H 1.08995 * 109.50079 * 294.60627 * 11 10 9 40 40 H 1.08998 * 109.50088 * 174.50764 * 11 10 9 41 41 H 0.97001 * 120.00397 * 95.06457 * 14 12 11 42 42 H 0.97003 * 119.99622 * 180.02562 * 18 17 15 43 43 H 1.08999 * 109.49903 * 301.41640 * 23 12 11 44 44 H 1.09001 * 109.52907 * 181.32686 * 23 12 11 45 45 H 1.09003 * 109.47182 * 179.72382 * 26 24 9 46 46 H 1.09005 * 109.47142 * 299.71552 * 26 24 9 47 47 H 1.08994 * 109.47409 * 59.71619 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.3082 2.0677 -0.8846 6 6 5.5939 1.7991 -0.5095 7 6 6.8098 2.2790 -1.1935 8 8 6.7190 3.0767 -2.1067 9 7 8.0213 1.8333 -0.8061 10 6 8.1549 0.9351 0.3494 11 6 8.9394 -0.3094 -0.0779 12 6 10.2712 0.1198 -0.6976 13 1 10.8389 0.7016 0.0286 14 7 11.0383 -1.0691 -1.0774 15 6 11.8224 -1.7029 -0.1508 16 1 11.8751 -1.3264 0.8602 17 6 12.5496 -2.8291 -0.5107 18 7 12.4858 -3.2875 -1.7428 19 14 13.6187 -3.6940 0.7535 20 1 13.5182 -2.9854 2.0547 21 1 13.1573 -5.0960 0.9159 22 1 15.0311 -3.6877 0.2947 23 6 10.0062 0.9738 -1.9397 24 6 9.2337 2.2329 -1.5334 25 1 8.9563 2.7950 -2.4251 26 6 10.1101 3.1032 -0.6305 27 7 5.5640 1.0285 0.5912 28 7 4.3412 0.7972 0.9214 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6766 1.9564 -0.8900 36 1 3.9953 2.6644 -1.7286 37 1 7.1657 0.6408 0.7000 38 1 8.6904 1.4481 1.1482 39 1 8.3606 -0.8701 -0.8118 40 1 9.1289 -0.9369 0.7930 41 1 10.9908 -1.4074 -1.9853 42 1 12.9937 -4.0748 -1.9943 43 1 9.4172 0.4011 -2.6560 44 1 10.9546 1.2598 -2.3944 45 1 11.0112 3.3945 -1.1702 46 1 9.5570 3.9960 -0.3386 47 1 10.3864 2.5395 0.2605 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044803540.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:11 Heat of formation + Delta-G solvation = 79.048473 kcal Electronic energy + Delta-G solvation = -27486.634071 eV Core-core repulsion = 23707.271601 eV Total energy + Delta-G solvation = -3779.362470 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.44628 -39.88168 -37.47207 -36.41242 -34.47207 -33.18002 -32.32970 -31.71702 -30.74193 -29.19419 -27.49887 -27.19061 -24.50836 -23.59946 -23.32796 -22.70700 -21.82652 -21.36115 -20.37251 -18.58393 -17.61148 -16.94649 -16.61400 -16.44583 -15.85664 -15.50379 -15.02505 -14.84256 -14.70434 -14.07319 -13.95511 -13.82502 -13.44220 -13.41594 -13.19467 -12.97225 -12.68477 -12.61101 -12.41049 -12.28628 -12.06672 -11.93089 -11.65849 -11.39422 -11.19010 -10.93085 -10.86287 -10.76202 -10.62153 -10.51461 -10.19014 -10.10433 -9.80169 -9.56944 -9.50585 -9.44804 -8.79919 -8.35622 -6.89335 -5.71788 -3.00014 0.94552 1.61013 1.75645 3.08376 3.32672 3.46394 3.52138 3.54244 3.87297 4.03489 4.19072 4.43767 4.54334 4.63206 4.67564 4.77008 4.79948 5.00561 5.08857 5.15888 5.32757 5.35235 5.43678 5.45860 5.50153 5.55948 5.64158 5.66478 5.73612 5.86177 5.91042 6.03804 6.09619 6.12827 6.23796 6.39324 6.47778 6.57883 6.62834 6.65826 6.82141 7.05532 7.19430 7.57491 7.75263 7.82295 8.26285 8.46935 9.57965 10.16762 10.51437 11.51102 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.014895 B = 0.002928 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.375815 B = 9559.527065 C =10827.116725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.139 4.139 3 C 0.121 3.879 4 N -0.360 5.360 5 C 0.090 3.910 6 C -0.090 4.090 7 C 0.601 3.399 8 O -0.552 6.552 9 N -0.581 5.581 10 C 0.068 3.932 11 C -0.145 4.145 12 C 0.177 3.823 13 H 0.051 0.949 14 N -0.725 5.725 15 C -0.234 4.234 16 H 0.071 0.929 17 C -0.016 4.016 18 N -0.934 5.934 19 Si 0.905 3.095 20 H -0.280 1.280 21 H -0.292 1.292 22 H -0.292 1.292 23 C -0.133 4.133 24 C 0.141 3.859 25 H 0.095 0.905 26 C -0.160 4.160 27 N -0.200 5.200 28 N -0.065 5.065 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.104 0.896 36 H 0.204 0.796 37 H 0.136 0.864 38 H 0.062 0.938 39 H 0.055 0.945 40 H 0.073 0.927 41 H 0.383 0.617 42 H 0.254 0.746 43 H 0.062 0.938 44 H 0.076 0.924 45 H 0.068 0.932 46 H 0.052 0.948 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.778 13.066 2.317 27.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.178 4.178 3 C 0.000 4.000 4 N -0.146 5.146 5 C -0.067 4.067 6 C -0.229 4.229 7 C 0.387 3.613 8 O -0.430 6.430 9 N -0.311 5.311 10 C -0.056 4.056 11 C -0.186 4.186 12 C 0.067 3.933 13 H 0.068 0.932 14 N -0.365 5.365 15 C -0.365 4.365 16 H 0.089 0.911 17 C -0.212 4.212 18 N -0.582 5.582 19 Si 0.736 3.264 20 H -0.206 1.206 21 H -0.220 1.220 22 H -0.220 1.220 23 C -0.172 4.172 24 C 0.038 3.962 25 H 0.113 0.887 26 C -0.218 4.218 27 N -0.072 5.072 28 N -0.044 5.044 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.117 0.883 35 H 0.123 0.877 36 H 0.221 0.779 37 H 0.152 0.848 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.092 0.908 41 H 0.216 0.784 42 H 0.063 0.937 43 H 0.081 0.919 44 H 0.095 0.905 45 H 0.087 0.913 46 H 0.071 0.929 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -23.705 12.548 3.249 27.017 hybrid contribution 0.469 -0.228 -0.473 0.704 sum -23.236 12.320 2.776 26.446 Atomic orbital electron populations 1.21702 0.93847 1.02941 1.02265 1.21843 0.96947 0.94518 1.04449 1.22163 0.72564 1.00163 1.05092 1.50551 1.08773 1.35023 1.20205 1.23337 0.90054 0.97197 0.96105 1.21519 0.94636 1.07641 0.99106 1.16804 0.81691 0.80694 0.82156 1.90765 1.86330 1.35096 1.30855 1.48061 1.05223 1.46758 1.31062 1.22926 1.05483 0.90561 0.86582 1.22590 0.98205 0.96096 1.01754 1.20247 0.90781 0.88628 0.93646 0.93157 1.42450 1.52609 1.29510 1.11942 1.19286 1.18381 1.06468 0.92352 0.91141 1.24736 1.01050 0.98901 0.96475 1.69678 1.45846 1.25868 1.16855 0.86143 0.80193 0.79473 0.80564 1.20557 1.21969 1.21972 1.22208 0.99950 0.95476 0.99516 1.21237 0.83741 0.95895 0.95321 0.88700 1.22132 0.99545 0.99280 1.00827 1.74246 1.11691 1.10466 1.10808 1.82018 0.93717 1.17114 1.11585 0.92112 0.92250 0.91579 0.90908 0.89901 0.88340 0.87733 0.77944 0.84804 0.92009 0.92618 0.90832 0.78378 0.93658 0.91924 0.90540 0.91330 0.92887 0.91565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.47 9.91 37.16 0.37 -0.11 16 2 C -0.14 -0.69 6.14 -26.73 -0.16 -0.86 16 3 C 0.12 0.56 6.54 -4.05 -0.03 0.53 16 4 N -0.36 -3.25 3.69 -61.06 -0.23 -3.47 16 5 C 0.09 0.88 11.28 -16.83 -0.19 0.69 16 6 C -0.09 -1.22 6.77 -83.55 -0.57 -1.78 16 7 C 0.60 9.39 7.69 -12.47 -0.10 9.29 16 8 O -0.55 -9.46 16.30 5.28 0.09 -9.38 16 9 N -0.58 -9.12 2.69 -166.41 -0.45 -9.57 16 10 C 0.07 1.08 5.89 -3.69 -0.02 1.06 16 11 C -0.15 -2.72 5.66 -26.61 -0.15 -2.87 16 12 C 0.18 3.56 2.53 -67.89 -0.17 3.39 16 13 H 0.05 1.03 6.44 -51.93 -0.33 0.69 16 14 N -0.72 -18.36 5.12 -53.39 -0.27 -18.63 16 15 C -0.23 -6.51 9.93 -15.06 -0.15 -6.66 16 16 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 17 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 18 N -0.93 -28.57 13.06 55.49 0.72 -27.84 16 19 Si 0.90 22.65 29.55 -169.99 -5.02 17.63 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 22 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 23 C -0.13 -2.32 5.02 -26.61 -0.13 -2.45 16 24 C 0.14 2.18 3.19 -67.60 -0.22 1.96 16 25 H 0.09 1.48 7.03 -51.93 -0.36 1.11 16 26 C -0.16 -2.19 9.03 37.15 0.34 -1.86 16 27 N -0.20 -2.84 8.64 32.85 0.28 -2.55 16 28 N -0.07 -0.82 13.65 60.35 0.82 0.01 16 29 H 0.06 0.16 8.14 -51.93 -0.42 -0.27 16 30 H 0.06 0.14 8.14 -51.93 -0.42 -0.28 16 31 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.10 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.10 0.20 8.08 -51.93 -0.42 -0.22 16 36 H 0.20 1.32 8.06 -52.49 -0.42 0.90 16 37 H 0.14 2.11 3.63 -128.50 -0.47 1.64 16 38 H 0.06 0.93 7.50 -51.93 -0.39 0.54 16 39 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 41 H 0.38 10.39 7.80 -40.82 -0.32 10.07 16 42 H 0.25 7.50 8.31 -40.82 -0.34 7.17 16 43 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 45 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 47 H 0.07 0.95 5.74 -51.93 -0.30 0.65 16 LS Contribution 377.22 15.07 5.68 5.68 Total: -1.00 -33.98 377.22 -7.28 -41.26 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -7.63 Total: 7.08 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: -1.28 Total: -0.22 kcal Atomic # 7 Polarization: -62.95 SS G_CDS: 0.89 Total: -62.06 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: 0.09 Total: -9.38 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.98 -7.28 -41.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044803540.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.308 kcal (2) G-P(sol) polarization free energy of solvation -33.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds