Wall clock time and date at job start Fri Apr 10 2020 18:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47091 * 2 1 4 4 N 1.46493 * 109.47542 * 180.02562 * 3 2 1 5 5 C 1.34819 * 126.59792 * 125.26596 * 4 3 2 6 6 C 1.36597 * 106.83661 * 180.10918 * 5 4 3 7 7 C 1.47528 * 125.76535 * 179.90222 * 6 5 4 8 8 O 1.21597 * 120.00275 * 6.77397 * 7 6 5 9 9 N 1.34776 * 119.99934 * 186.77515 * 7 6 5 10 10 C 1.46960 * 120.65347 * 356.13564 * 9 7 6 11 11 C 1.53191 * 108.88925 * 126.46549 * 10 9 7 12 12 C 1.53043 * 109.31307 * 54.55966 * 11 10 9 13 13 H 1.09002 * 109.45791 * 58.64973 * 12 11 10 14 14 N 1.46495 * 109.45055 * 178.62185 * 12 11 10 15 15 C 1.36938 * 120.00104 * 275.05527 * 14 12 11 16 16 H 1.08005 * 119.99741 * 0.02562 * 15 14 12 17 17 C 1.38806 * 120.00295 * 180.02562 * 15 14 12 18 18 N 1.31620 * 119.99782 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 120.00200 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47309 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47494 * 119.99897 * 19 17 15 22 22 H 1.48506 * 109.47148 * 239.99881 * 19 17 15 23 23 C 1.53041 * 109.53588 * 298.63458 * 12 11 10 24 24 C 1.46924 * 120.63324 * 175.95700 * 9 7 6 25 25 H 1.09003 * 109.58600 * 353.39343 * 24 9 7 26 26 C 1.52995 * 109.58848 * 113.67586 * 24 9 7 27 27 N 1.34399 * 108.46204 * 359.63946 * 6 5 4 28 28 N 1.28756 * 109.52303 * 0.22260 * 27 6 5 29 29 H 1.09003 * 109.47290 * 299.99750 * 1 2 3 30 30 H 1.08997 * 109.47441 * 60.00309 * 1 2 3 31 31 H 1.09002 * 109.46945 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47506 * 239.99790 * 2 1 3 33 33 H 1.09007 * 109.47399 * 119.99678 * 2 1 3 34 34 H 1.09003 * 109.47555 * 59.99734 * 3 2 1 35 35 H 1.09006 * 109.47261 * 300.00063 * 3 2 1 36 36 H 1.07992 * 126.58050 * 359.97438 * 5 4 3 37 37 H 1.09001 * 109.59767 * 6.61019 * 10 9 7 38 38 H 1.08998 * 109.46592 * 246.24936 * 10 9 7 39 39 H 1.08995 * 109.50079 * 294.60627 * 11 10 9 40 40 H 1.08998 * 109.50088 * 174.50764 * 11 10 9 41 41 H 0.97001 * 120.00397 * 95.06457 * 14 12 11 42 42 H 0.97003 * 119.99622 * 180.02562 * 18 17 15 43 43 H 1.08999 * 109.49903 * 301.41640 * 23 12 11 44 44 H 1.09001 * 109.52907 * 181.32686 * 23 12 11 45 45 H 1.09003 * 109.47182 * 179.72382 * 26 24 9 46 46 H 1.09005 * 109.47142 * 299.71552 * 26 24 9 47 47 H 1.08994 * 109.47409 * 59.71619 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.3082 2.0677 -0.8846 6 6 5.5939 1.7991 -0.5095 7 6 6.8098 2.2790 -1.1935 8 8 6.7190 3.0767 -2.1067 9 7 8.0213 1.8333 -0.8061 10 6 8.1549 0.9351 0.3494 11 6 8.9394 -0.3094 -0.0779 12 6 10.2712 0.1198 -0.6976 13 1 10.8389 0.7016 0.0286 14 7 11.0383 -1.0691 -1.0774 15 6 11.8224 -1.7029 -0.1508 16 1 11.8751 -1.3264 0.8602 17 6 12.5496 -2.8291 -0.5107 18 7 12.4858 -3.2875 -1.7428 19 14 13.6187 -3.6940 0.7535 20 1 13.5182 -2.9854 2.0547 21 1 13.1573 -5.0960 0.9159 22 1 15.0311 -3.6877 0.2947 23 6 10.0062 0.9738 -1.9397 24 6 9.2337 2.2329 -1.5334 25 1 8.9563 2.7950 -2.4251 26 6 10.1101 3.1032 -0.6305 27 7 5.5640 1.0285 0.5912 28 7 4.3412 0.7972 0.9214 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6766 1.9564 -0.8900 36 1 3.9953 2.6644 -1.7286 37 1 7.1657 0.6408 0.7000 38 1 8.6904 1.4481 1.1482 39 1 8.3606 -0.8701 -0.8118 40 1 9.1289 -0.9369 0.7930 41 1 10.9908 -1.4074 -1.9853 42 1 12.9937 -4.0748 -1.9943 43 1 9.4172 0.4011 -2.6560 44 1 10.9546 1.2598 -2.3944 45 1 11.0112 3.3945 -1.1702 46 1 9.5570 3.9960 -0.3386 47 1 10.3864 2.5395 0.2605 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044803540.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:10 Heat of formation + Delta-G solvation = 56.591460 kcal Electronic energy + Delta-G solvation = -27487.607881 eV Core-core repulsion = 23707.271601 eV Total energy + Delta-G solvation = -3780.336280 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -43.32884 -41.14333 -38.86539 -36.98254 -36.22466 -34.13105 -33.57313 -33.29595 -31.71289 -30.94600 -28.59959 -28.02783 -26.07801 -25.04351 -24.34802 -23.75783 -22.84384 -22.40463 -21.52585 -19.90857 -19.05875 -18.51878 -17.67602 -17.23125 -16.90715 -16.69236 -16.25233 -15.93787 -15.70538 -15.59034 -15.29257 -15.11549 -14.88325 -14.47544 -14.43782 -14.02738 -13.83959 -13.63407 -13.41306 -13.11694 -13.03256 -12.89836 -12.89081 -12.81539 -12.43826 -12.39118 -12.22236 -12.10590 -11.99286 -11.79962 -11.75627 -11.48172 -11.27588 -11.12743 -11.04801 -10.66541 -10.37468 -9.63732 -8.97995 -7.92207 -5.20529 0.15075 0.57166 1.10406 1.47955 1.48486 1.58583 1.91940 2.20482 2.57523 3.08369 3.31707 3.41450 3.64341 3.79760 3.83778 3.88410 3.94678 4.12178 4.13800 4.17066 4.22142 4.29318 4.33762 4.45471 4.48762 4.55977 4.61346 4.62761 4.73352 4.79455 4.88691 5.03049 5.05476 5.08721 5.12401 5.16490 5.27465 5.30685 5.32857 5.38904 5.50602 5.53583 5.56169 5.73826 6.29804 6.36047 6.83497 7.10195 7.35577 8.11342 8.35053 9.31786 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.014895 B = 0.002928 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.375815 B = 9559.527065 C =10827.116725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.137 4.137 3 C 0.111 3.889 4 N -0.345 5.345 5 C 0.113 3.887 6 C -0.122 4.122 7 C 0.601 3.399 8 O -0.570 6.570 9 N -0.586 5.586 10 C 0.080 3.920 11 C -0.134 4.134 12 C 0.175 3.825 13 H 0.053 0.947 14 N -0.737 5.737 15 C -0.231 4.231 16 H 0.077 0.923 17 C -0.080 4.080 18 N -0.972 5.972 19 Si 0.970 3.030 20 H -0.265 1.265 21 H -0.296 1.296 22 H -0.294 1.294 23 C -0.122 4.122 24 C 0.146 3.854 25 H 0.097 0.903 26 C -0.154 4.154 27 N -0.225 5.225 28 N -0.087 5.087 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.116 0.884 35 H 0.143 0.857 36 H 0.240 0.760 37 H 0.143 0.857 38 H 0.072 0.928 39 H 0.037 0.963 40 H 0.058 0.942 41 H 0.370 0.630 42 H 0.249 0.751 43 H 0.049 0.951 44 H 0.077 0.923 45 H 0.080 0.920 46 H 0.063 0.937 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.700 14.885 2.969 29.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.175 4.175 3 C -0.007 4.007 4 N -0.130 5.130 5 C -0.045 4.045 6 C -0.262 4.262 7 C 0.388 3.612 8 O -0.449 6.449 9 N -0.316 5.316 10 C -0.043 4.043 11 C -0.175 4.175 12 C 0.066 3.934 13 H 0.071 0.929 14 N -0.376 5.376 15 C -0.363 4.363 16 H 0.095 0.905 17 C -0.271 4.271 18 N -0.624 5.624 19 Si 0.800 3.200 20 H -0.189 1.189 21 H -0.224 1.224 22 H -0.221 1.221 23 C -0.161 4.161 24 C 0.043 3.957 25 H 0.115 0.885 26 C -0.212 4.212 27 N -0.097 5.097 28 N -0.067 5.067 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.134 0.866 35 H 0.160 0.840 36 H 0.256 0.744 37 H 0.159 0.841 38 H 0.090 0.910 39 H 0.056 0.944 40 H 0.077 0.923 41 H 0.201 0.799 42 H 0.058 0.942 43 H 0.068 0.932 44 H 0.096 0.904 45 H 0.099 0.901 46 H 0.082 0.918 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -25.678 14.397 3.951 29.702 hybrid contribution 0.889 -0.741 -0.704 1.354 sum -24.789 13.656 3.247 28.487 Atomic orbital electron populations 1.21672 0.92179 1.03003 1.03403 1.21794 0.98284 0.94575 1.02856 1.22674 0.69823 1.00349 1.07871 1.50857 1.10111 1.33285 1.18764 1.23840 0.88760 0.95819 0.96076 1.21459 0.95196 1.09495 1.00033 1.17052 0.82061 0.80216 0.81832 1.90743 1.86651 1.35914 1.31630 1.48089 1.05629 1.46873 1.31034 1.22806 1.05514 0.89236 0.86793 1.22387 0.97507 0.97192 1.00408 1.20444 0.90696 0.87257 0.94960 0.92892 1.42665 1.53109 1.30831 1.11020 1.19651 1.17607 1.06161 0.92874 0.90523 1.25544 1.03098 1.00145 0.98356 1.69836 1.47280 1.26430 1.18808 0.85104 0.78030 0.77982 0.78879 1.18894 1.22350 1.22140 1.22076 1.00222 0.95931 0.97896 1.21188 0.83796 0.94784 0.95981 0.88474 1.22083 0.99784 0.99114 1.00172 1.74094 1.12808 1.11248 1.11542 1.81932 0.93680 1.18163 1.12898 0.91260 0.90785 0.92135 0.92085 0.92007 0.86561 0.83957 0.74358 0.84111 0.90984 0.94409 0.92313 0.79869 0.94198 0.93199 0.90412 0.90100 0.91823 0.92254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.58 9.91 71.98 0.71 0.13 16 2 C -0.14 -1.13 6.14 30.59 0.19 -0.94 16 3 C 0.11 0.66 6.54 86.38 0.56 1.23 16 4 N -0.35 -5.41 3.69 -347.11 -1.28 -6.70 16 5 C 0.11 1.92 11.28 83.85 0.95 2.86 16 6 C -0.12 -3.16 6.77 40.82 0.28 -2.88 16 7 C 0.60 18.18 7.69 86.69 0.67 18.84 16 8 O -0.57 -18.72 16.30 -4.02 -0.07 -18.79 16 9 N -0.59 -18.04 2.69 -798.67 -2.14 -20.19 16 10 C 0.08 2.52 5.89 86.36 0.51 3.03 16 11 C -0.13 -5.10 5.66 30.67 0.17 -4.93 16 12 C 0.17 7.09 2.53 45.02 0.11 7.21 16 13 H 0.05 2.14 6.44 -2.39 -0.02 2.13 16 14 N -0.74 -38.12 5.12 -322.81 -1.65 -39.78 16 15 C -0.23 -12.99 9.93 84.03 0.83 -12.15 16 16 H 0.08 4.14 7.83 -2.91 -0.02 4.11 16 17 C -0.08 -4.66 5.50 84.86 0.47 -4.19 16 18 N -0.97 -60.83 13.06 21.65 0.28 -60.55 16 19 Si 0.97 47.03 29.55 68.60 2.03 49.06 16 20 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 21 H -0.30 -14.41 7.11 99.48 0.71 -13.71 16 22 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 23 C -0.12 -4.29 5.02 30.67 0.15 -4.14 16 24 C 0.15 4.37 3.19 44.98 0.14 4.52 16 25 H 0.10 2.93 7.03 -2.39 -0.02 2.91 16 26 C -0.15 -3.97 9.03 71.98 0.65 -3.32 16 27 N -0.22 -6.27 8.64 -49.99 -0.43 -6.70 16 28 N -0.09 -2.12 13.65 37.02 0.51 -1.61 16 29 H 0.07 0.18 8.14 -2.39 -0.02 0.16 16 30 H 0.07 0.11 8.14 -2.39 -0.02 0.09 16 31 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 34 H 0.12 0.38 8.14 -2.39 -0.02 0.36 16 35 H 0.14 -0.14 8.08 -2.38 -0.02 -0.16 16 36 H 0.24 2.12 8.06 -2.91 -0.02 2.10 16 37 H 0.14 4.43 3.63 -101.46 -0.37 4.06 16 38 H 0.07 2.12 7.50 -2.39 -0.02 2.10 16 39 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 41 H 0.37 20.76 7.80 -92.71 -0.72 20.04 16 42 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 43 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 45 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 46 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 47 H 0.06 1.61 5.74 -2.39 -0.01 1.60 16 Total: -1.00 -74.73 377.22 3.53 -71.19 By element: Atomic # 1 Polarization: 28.90 SS G_CDS: -0.10 Total: 28.79 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: 6.40 Total: 5.26 kcal Atomic # 7 Polarization: -130.80 SS G_CDS: -4.72 Total: -135.52 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: -0.07 Total: -18.79 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 2.03 Total: 49.06 kcal Total: -74.73 3.53 -71.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044803540.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.785 kcal (2) G-P(sol) polarization free energy of solvation -74.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds