Wall clock time and date at job start Fri Apr 10 2020 18:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46499 * 109.47174 * 2 1 4 4 N 1.28520 * 124.44087 * 270.02322 * 3 2 1 5 5 C 1.31131 * 109.05980 * 179.69100 * 4 3 2 6 6 C 1.50694 * 127.11659 * 180.28858 * 5 4 3 7 7 C 1.40931 * 105.77295 * 0.43031 * 5 4 3 8 8 C 1.47804 * 127.23628 * 179.83800 * 7 5 4 9 9 O 1.21557 * 120.00006 * 6.09953 * 8 7 5 10 10 N 1.34777 * 119.99718 * 186.10113 * 8 7 5 11 11 C 1.46921 * 120.63212 * 6.24752 * 10 8 7 12 12 C 1.53195 * 108.77400 * 126.41192 * 11 10 8 13 13 C 1.53108 * 109.33286 * 54.63588 * 12 11 10 14 14 H 1.08998 * 109.50921 * 178.62950 * 13 12 11 15 15 N 1.46509 * 109.44908 * 58.64835 * 13 12 11 16 16 C 1.36925 * 119.99942 * 84.98581 * 15 13 12 17 17 H 1.08002 * 120.00506 * 359.97438 * 16 15 13 18 18 C 1.38819 * 119.99889 * 180.02562 * 16 15 13 19 19 N 1.31610 * 120.00004 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99848 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47321 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47278 * 119.99987 * 20 18 16 23 23 H 1.48500 * 109.47395 * 239.99954 * 20 18 16 24 24 C 1.53042 * 109.50007 * 298.65771 * 13 12 11 25 25 C 1.46923 * 120.62650 * 186.26650 * 10 8 7 26 26 H 1.09009 * 109.70089 * 113.73118 * 25 10 8 27 27 C 1.53003 * 109.58843 * 353.37973 * 25 10 8 28 28 N 1.28582 * 124.44517 * 89.99853 * 3 2 1 29 29 H 1.09003 * 109.46723 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47267 * 299.99872 * 1 2 3 31 31 H 1.09001 * 109.46962 * 60.00611 * 1 2 3 32 32 H 1.09002 * 109.47413 * 239.99593 * 2 1 3 33 33 H 1.09010 * 109.46955 * 119.99642 * 2 1 3 34 34 H 1.08997 * 109.47089 * 270.16993 * 6 5 4 35 35 H 1.08997 * 109.47149 * 30.17440 * 6 5 4 36 36 H 1.09002 * 109.47338 * 150.17261 * 6 5 4 37 37 H 1.09003 * 109.58992 * 246.19873 * 11 10 8 38 38 H 1.08998 * 109.58839 * 6.48452 * 11 10 8 39 39 H 1.09004 * 109.50055 * 174.58364 * 12 11 10 40 40 H 1.08998 * 109.50463 * 294.65028 * 12 11 10 41 41 H 0.97008 * 119.99665 * 264.98376 * 15 13 12 42 42 H 0.97003 * 120.00022 * 180.02562 * 19 18 16 43 43 H 1.08998 * 109.49609 * 301.37468 * 24 13 12 44 44 H 1.09006 * 109.49457 * 181.31442 * 24 13 12 45 45 H 1.09001 * 109.46740 * 303.62160 * 27 25 10 46 46 H 1.08991 * 109.47293 * 63.62944 * 27 25 10 47 47 H 1.09008 * 109.46654 * 183.63123 * 27 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2602 2.0666 -1.0599 5 6 2.6755 3.2608 -0.7121 6 6 3.0656 4.3909 -1.6295 7 6 2.6848 3.2678 0.6971 8 6 3.0789 4.3831 1.5834 9 8 3.3388 5.4724 1.1107 10 7 3.1501 4.1922 2.9157 11 6 2.9730 2.8517 3.4904 12 6 4.1762 2.5357 4.3844 13 6 4.3418 3.6481 5.4233 14 1 5.1825 3.4140 6.0764 15 7 3.1185 3.7556 6.2223 16 6 2.9384 2.9449 7.3110 17 1 3.6980 2.2260 7.5805 18 6 1.7790 3.0463 8.0677 19 7 0.8532 3.9220 7.7389 20 14 1.5331 1.9399 9.5525 21 1 2.7114 1.0494 9.7069 22 1 1.3794 2.7740 10.7714 23 1 0.3127 1.1162 9.3593 24 6 4.6041 4.9772 4.7112 25 6 3.4058 5.3209 3.8209 26 1 2.5282 5.4997 4.4423 27 6 3.7183 6.5748 3.0018 28 7 2.2608 2.0669 1.0604 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8901 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8901 34 1 4.1299 4.3247 -1.8554 35 1 2.4929 4.3223 -2.5544 36 1 2.8562 5.3432 -1.1424 37 1 2.0596 2.8266 4.0847 38 1 2.9076 2.1161 2.6887 39 1 4.0124 1.5853 4.8924 40 1 5.0766 2.4711 3.7735 41 1 2.4361 4.4011 5.9800 42 1 0.0432 3.9932 8.2679 43 1 5.5005 4.8902 4.0972 44 1 4.7452 5.7648 5.4515 45 1 4.5609 6.3756 2.3397 46 1 2.8460 6.8476 2.4079 47 1 3.9707 7.3946 3.6745 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044883854.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:39 Heat of formation + Delta-G solvation = 107.023061 kcal Electronic energy + Delta-G solvation = -28672.701526 eV Core-core repulsion = 24894.552124 eV Total energy + Delta-G solvation = -3778.149401 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.69176 -40.08230 -37.38852 -35.24943 -34.27011 -33.33871 -32.25960 -31.86497 -31.13054 -29.07072 -28.05973 -27.01561 -25.20306 -23.95949 -23.41480 -22.76447 -21.87244 -20.90454 -20.00371 -18.51177 -17.34506 -17.17196 -16.73346 -16.42326 -15.65254 -15.08319 -14.81175 -14.40274 -14.21127 -14.02488 -13.81630 -13.61961 -13.49499 -13.24865 -12.97937 -12.90509 -12.70120 -12.45263 -12.40174 -12.01986 -11.92893 -11.72779 -11.64925 -11.39811 -11.18416 -10.94495 -10.84261 -10.75843 -10.53694 -10.33819 -10.19506 -9.90780 -9.84326 -9.61080 -9.21335 -8.96066 -8.88788 -8.08054 -6.95854 -5.77366 -3.05711 1.36161 1.91447 2.04934 3.23091 3.41676 3.42560 3.47763 3.49774 3.87062 4.50986 4.52126 4.58645 4.70655 4.78002 4.86499 5.18773 5.32038 5.34801 5.35959 5.45289 5.47782 5.61427 5.62811 5.66403 5.70129 5.71960 5.84210 5.85894 5.91171 5.98119 6.07462 6.17925 6.24450 6.32780 6.37848 6.52722 6.53751 6.64769 6.71949 6.80785 6.84079 6.94250 7.14540 7.70351 7.75402 8.13366 8.41141 8.42917 9.52610 10.10114 10.45210 11.45305 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.012830 B = 0.004191 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2181.909049 B = 6679.010506 C = 8220.773560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.133 3.867 3 N -0.147 5.147 4 N -0.295 5.295 5 C 0.056 3.944 6 C -0.067 4.067 7 C -0.040 4.040 8 C 0.602 3.398 9 O -0.533 6.533 10 N -0.580 5.580 11 C 0.095 3.905 12 C -0.147 4.147 13 C 0.172 3.828 14 H 0.050 0.950 15 N -0.721 5.721 16 C -0.236 4.236 17 H 0.070 0.930 18 C -0.013 4.013 19 N -0.932 5.932 20 Si 0.904 3.096 21 H -0.281 1.281 22 H -0.292 1.292 23 H -0.293 1.293 24 C -0.133 4.133 25 C 0.146 3.854 26 H 0.082 0.918 27 C -0.135 4.135 28 N -0.241 5.241 29 H 0.086 0.914 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.109 0.891 33 H 0.112 0.888 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.097 0.903 37 H 0.081 0.919 38 H 0.109 0.891 39 H 0.072 0.928 40 H 0.045 0.955 41 H 0.383 0.617 42 H 0.254 0.746 43 H 0.061 0.939 44 H 0.075 0.925 45 H 0.069 0.931 46 H 0.068 0.932 47 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.489 -4.507 -18.020 18.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.014 3.986 3 N -0.049 5.049 4 N -0.137 5.137 5 C -0.108 4.108 6 C -0.125 4.125 7 C -0.203 4.203 8 C 0.387 3.613 9 O -0.410 6.410 10 N -0.311 5.311 11 C -0.028 4.028 12 C -0.188 4.188 13 C 0.062 3.938 14 H 0.068 0.932 15 N -0.364 5.364 16 C -0.368 4.368 17 H 0.088 0.912 18 C -0.208 4.208 19 N -0.581 5.581 20 Si 0.735 3.265 21 H -0.206 1.206 22 H -0.220 1.220 23 H -0.220 1.220 24 C -0.171 4.171 25 C 0.043 3.957 26 H 0.100 0.900 27 C -0.192 4.192 28 N -0.088 5.088 29 H 0.105 0.895 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.127 0.873 33 H 0.130 0.870 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.116 0.884 37 H 0.099 0.901 38 H 0.126 0.874 39 H 0.090 0.910 40 H 0.064 0.936 41 H 0.218 0.782 42 H 0.064 0.936 43 H 0.080 0.920 44 H 0.093 0.907 45 H 0.088 0.912 46 H 0.087 0.913 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 3.185 -5.348 -18.090 19.131 hybrid contribution -0.288 0.031 1.011 1.052 sum 2.897 -5.317 -17.079 18.120 Atomic orbital electron populations 1.22192 0.92900 1.04000 1.03907 1.22079 0.96272 0.74271 1.05973 1.48310 1.43719 1.13419 0.99446 1.73875 1.18949 1.05225 1.15613 1.23211 1.01158 0.93727 0.92678 1.20209 1.01666 0.93954 0.96718 1.23208 1.09032 0.93690 0.94339 1.16798 0.77844 0.85233 0.81393 1.90799 1.51072 1.23695 1.75396 1.48011 1.68119 1.10382 1.04565 1.22371 0.99875 0.82293 0.98256 1.22503 0.96493 1.01641 0.98136 1.20231 0.91107 0.91446 0.91012 0.93208 1.42506 1.18119 1.44905 1.30849 1.19280 1.01644 1.13009 1.02827 0.91186 1.24707 0.97051 0.99522 0.99569 1.69661 1.09307 1.37849 1.41265 0.86166 0.77448 0.79900 0.82960 1.20631 1.21960 1.22009 1.22239 0.97060 0.99468 0.98382 1.21320 0.98749 0.85277 0.90332 0.90002 1.22225 1.03647 0.94928 0.98417 1.74435 1.15216 1.04655 1.14527 0.89479 0.91032 0.91472 0.87320 0.87018 0.90389 0.90960 0.88419 0.90083 0.87426 0.90987 0.93649 0.78161 0.93608 0.92044 0.90673 0.91231 0.91311 0.93906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.25 10.24 37.16 0.38 -0.87 16 2 C 0.13 1.07 7.24 -4.04 -0.03 1.04 16 3 N -0.15 -1.87 3.94 -10.61 -0.04 -1.91 16 4 N -0.30 -3.99 12.01 33.92 0.41 -3.58 16 5 C 0.06 0.79 7.39 -81.88 -0.61 0.18 16 6 C -0.07 -0.74 10.06 36.00 0.36 -0.38 16 7 C -0.04 -0.63 6.88 -82.68 -0.57 -1.20 16 8 C 0.60 10.24 7.61 -12.35 -0.09 10.14 16 9 O -0.53 -9.23 10.57 5.32 0.06 -9.17 16 10 N -0.58 -10.04 2.97 -166.34 -0.49 -10.54 16 11 C 0.09 1.68 5.89 -3.71 -0.02 1.66 16 12 C -0.15 -2.59 5.78 -26.58 -0.15 -2.75 16 13 C 0.17 3.35 3.10 -67.85 -0.21 3.14 16 14 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 15 N -0.72 -17.24 4.31 -53.35 -0.23 -17.47 16 16 C -0.24 -6.31 9.93 -15.06 -0.15 -6.46 16 17 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 18 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 19 N -0.93 -27.54 13.06 55.49 0.72 -26.82 16 20 Si 0.90 21.98 29.55 -169.99 -5.02 16.96 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 23 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 24 C -0.13 -2.25 5.07 -26.61 -0.13 -2.38 16 25 C 0.15 2.52 3.19 -67.60 -0.22 2.31 16 26 H 0.08 1.60 6.65 -51.92 -0.35 1.25 16 27 C -0.13 -2.13 7.59 37.16 0.28 -1.85 16 28 N -0.24 -3.61 8.64 33.43 0.29 -3.32 16 29 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.11 0.76 8.14 -51.92 -0.42 0.33 16 34 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.10 1.17 6.67 -51.93 -0.35 0.82 16 37 H 0.08 1.68 7.74 -51.93 -0.40 1.28 16 38 H 0.11 1.79 4.14 -67.78 -0.28 1.51 16 39 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 40 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.38 9.80 6.07 -40.82 -0.25 9.56 16 42 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 43 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 44 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 45 H 0.07 1.12 6.75 -51.93 -0.35 0.77 16 46 H 0.07 1.15 6.75 -51.93 -0.35 0.80 16 47 H 0.04 0.61 8.14 -51.92 -0.42 0.19 16 LS Contribution 368.54 15.07 5.55 5.55 Total: -1.00 -31.41 368.54 -7.38 -38.78 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: -7.36 Total: 9.40 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: -1.26 Total: 2.12 kcal Atomic # 7 Polarization: -64.30 SS G_CDS: 0.65 Total: -63.64 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: 0.06 Total: -9.17 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.41 -7.38 -38.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044883854.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.807 kcal (2) G-P(sol) polarization free energy of solvation -31.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds