Wall clock time and date at job start Fri Apr 10 2020 18:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46499 * 109.47174 * 2 1 4 4 N 1.28520 * 124.44087 * 270.02322 * 3 2 1 5 5 C 1.31131 * 109.05980 * 179.69100 * 4 3 2 6 6 C 1.50694 * 127.11659 * 180.28858 * 5 4 3 7 7 C 1.40931 * 105.77295 * 0.43031 * 5 4 3 8 8 C 1.47804 * 127.23628 * 179.83800 * 7 5 4 9 9 O 1.21557 * 120.00006 * 6.09953 * 8 7 5 10 10 N 1.34777 * 119.99718 * 186.10113 * 8 7 5 11 11 C 1.46921 * 120.63212 * 6.24752 * 10 8 7 12 12 C 1.53195 * 108.77400 * 126.41192 * 11 10 8 13 13 C 1.53108 * 109.33286 * 54.63588 * 12 11 10 14 14 H 1.08998 * 109.50921 * 178.62950 * 13 12 11 15 15 N 1.46509 * 109.44908 * 58.64835 * 13 12 11 16 16 C 1.36925 * 119.99942 * 84.98581 * 15 13 12 17 17 H 1.08002 * 120.00506 * 359.97438 * 16 15 13 18 18 C 1.38819 * 119.99889 * 180.02562 * 16 15 13 19 19 N 1.31610 * 120.00004 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99848 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47321 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47278 * 119.99987 * 20 18 16 23 23 H 1.48500 * 109.47395 * 239.99954 * 20 18 16 24 24 C 1.53042 * 109.50007 * 298.65771 * 13 12 11 25 25 C 1.46923 * 120.62650 * 186.26650 * 10 8 7 26 26 H 1.09009 * 109.70089 * 113.73118 * 25 10 8 27 27 C 1.53003 * 109.58843 * 353.37973 * 25 10 8 28 28 N 1.28582 * 124.44517 * 89.99853 * 3 2 1 29 29 H 1.09003 * 109.46723 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47267 * 299.99872 * 1 2 3 31 31 H 1.09001 * 109.46962 * 60.00611 * 1 2 3 32 32 H 1.09002 * 109.47413 * 239.99593 * 2 1 3 33 33 H 1.09010 * 109.46955 * 119.99642 * 2 1 3 34 34 H 1.08997 * 109.47089 * 270.16993 * 6 5 4 35 35 H 1.08997 * 109.47149 * 30.17440 * 6 5 4 36 36 H 1.09002 * 109.47338 * 150.17261 * 6 5 4 37 37 H 1.09003 * 109.58992 * 246.19873 * 11 10 8 38 38 H 1.08998 * 109.58839 * 6.48452 * 11 10 8 39 39 H 1.09004 * 109.50055 * 174.58364 * 12 11 10 40 40 H 1.08998 * 109.50463 * 294.65028 * 12 11 10 41 41 H 0.97008 * 119.99665 * 264.98376 * 15 13 12 42 42 H 0.97003 * 120.00022 * 180.02562 * 19 18 16 43 43 H 1.08998 * 109.49609 * 301.37468 * 24 13 12 44 44 H 1.09006 * 109.49457 * 181.31442 * 24 13 12 45 45 H 1.09001 * 109.46740 * 303.62160 * 27 25 10 46 46 H 1.08991 * 109.47293 * 63.62944 * 27 25 10 47 47 H 1.09008 * 109.46654 * 183.63123 * 27 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2602 2.0666 -1.0599 5 6 2.6755 3.2608 -0.7121 6 6 3.0656 4.3909 -1.6295 7 6 2.6848 3.2678 0.6971 8 6 3.0789 4.3831 1.5834 9 8 3.3388 5.4724 1.1107 10 7 3.1501 4.1922 2.9157 11 6 2.9730 2.8517 3.4904 12 6 4.1762 2.5357 4.3844 13 6 4.3418 3.6481 5.4233 14 1 5.1825 3.4140 6.0764 15 7 3.1185 3.7556 6.2223 16 6 2.9384 2.9449 7.3110 17 1 3.6980 2.2260 7.5805 18 6 1.7790 3.0463 8.0677 19 7 0.8532 3.9220 7.7389 20 14 1.5331 1.9399 9.5525 21 1 2.7114 1.0494 9.7069 22 1 1.3794 2.7740 10.7714 23 1 0.3127 1.1162 9.3593 24 6 4.6041 4.9772 4.7112 25 6 3.4058 5.3209 3.8209 26 1 2.5282 5.4997 4.4423 27 6 3.7183 6.5748 3.0018 28 7 2.2608 2.0669 1.0604 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8901 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8901 34 1 4.1299 4.3247 -1.8554 35 1 2.4929 4.3223 -2.5544 36 1 2.8562 5.3432 -1.1424 37 1 2.0596 2.8266 4.0847 38 1 2.9076 2.1161 2.6887 39 1 4.0124 1.5853 4.8924 40 1 5.0766 2.4711 3.7735 41 1 2.4361 4.4011 5.9800 42 1 0.0432 3.9932 8.2679 43 1 5.5005 4.8902 4.0972 44 1 4.7452 5.7648 5.4515 45 1 4.5609 6.3756 2.3397 46 1 2.8460 6.8476 2.4079 47 1 3.9707 7.3946 3.6745 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044883854.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:38 Heat of formation + Delta-G solvation = 87.321944 kcal Electronic energy + Delta-G solvation = -28673.555830 eV Core-core repulsion = 24894.552124 eV Total energy + Delta-G solvation = -3779.003706 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.75180 -41.45602 -38.85171 -36.12829 -35.91851 -34.62561 -33.65361 -33.37782 -32.12977 -30.86793 -29.03112 -28.39614 -26.30636 -25.69447 -25.02477 -23.79030 -23.07875 -21.96810 -21.38679 -19.95437 -19.20176 -18.30277 -17.85475 -17.64738 -17.02395 -16.71868 -16.05436 -15.71593 -15.62456 -15.39671 -15.18211 -14.93468 -14.69359 -14.54880 -14.24903 -14.08119 -13.82146 -13.48287 -13.39836 -13.32409 -13.09909 -12.99325 -12.90621 -12.76757 -12.55237 -12.40646 -12.35679 -12.20371 -12.06108 -11.97702 -11.65551 -11.48300 -11.36283 -11.25331 -10.80092 -10.27967 -10.22221 -9.51284 -8.94683 -7.89624 -5.16800 0.19802 0.84573 1.16942 1.48697 1.49455 1.58800 1.94138 2.14498 2.59222 2.82092 3.44045 3.49128 3.75434 3.88238 3.89818 3.92420 3.99117 4.05917 4.12864 4.21362 4.33511 4.41685 4.45268 4.50203 4.58237 4.65187 4.67396 4.78046 4.79344 4.86248 4.95654 4.97117 5.00382 5.06583 5.12227 5.13135 5.24090 5.28152 5.34548 5.36329 5.44654 5.58119 5.65809 5.78798 6.32205 6.39748 6.98046 7.16405 7.39144 8.14975 8.38856 9.34119 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.012830 B = 0.004191 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2181.909049 B = 6679.010506 C = 8220.773560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.119 3.881 3 N -0.136 5.136 4 N -0.296 5.296 5 C 0.051 3.949 6 C -0.064 4.064 7 C -0.068 4.068 8 C 0.601 3.399 9 O -0.538 6.538 10 N -0.584 5.584 11 C 0.106 3.894 12 C -0.137 4.137 13 C 0.165 3.835 14 H 0.051 0.949 15 N -0.730 5.730 16 C -0.229 4.229 17 H 0.076 0.924 18 C -0.074 4.074 19 N -0.970 5.970 20 Si 0.966 3.034 21 H -0.266 1.266 22 H -0.298 1.298 23 H -0.297 1.297 24 C -0.122 4.122 25 C 0.146 3.854 26 H 0.052 0.948 27 C -0.121 4.121 28 N -0.255 5.255 29 H 0.118 0.882 30 H 0.047 0.953 31 H 0.060 0.940 32 H 0.137 0.863 33 H 0.126 0.874 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.043 0.957 38 H 0.123 0.877 39 H 0.063 0.937 40 H 0.069 0.931 41 H 0.373 0.627 42 H 0.248 0.752 43 H 0.084 0.916 44 H 0.075 0.925 45 H 0.070 0.930 46 H 0.056 0.944 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.809 -5.907 -19.439 20.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.002 3.998 3 N -0.039 5.039 4 N -0.138 5.138 5 C -0.112 4.112 6 C -0.122 4.122 7 C -0.229 4.229 8 C 0.387 3.613 9 O -0.415 6.415 10 N -0.315 5.315 11 C -0.017 4.017 12 C -0.178 4.178 13 C 0.057 3.943 14 H 0.069 0.931 15 N -0.371 5.371 16 C -0.361 4.361 17 H 0.094 0.906 18 C -0.266 4.266 19 N -0.622 5.622 20 Si 0.796 3.204 21 H -0.190 1.190 22 H -0.226 1.226 23 H -0.225 1.225 24 C -0.160 4.160 25 C 0.043 3.957 26 H 0.070 0.930 27 C -0.178 4.178 28 N -0.104 5.104 29 H 0.136 0.864 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.155 0.845 33 H 0.144 0.856 34 H 0.110 0.890 35 H 0.109 0.891 36 H 0.105 0.895 37 H 0.061 0.939 38 H 0.140 0.860 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.206 0.794 42 H 0.057 0.943 43 H 0.102 0.898 44 H 0.094 0.906 45 H 0.089 0.911 46 H 0.075 0.925 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.556 -6.758 -19.538 21.170 hybrid contribution -0.699 0.396 1.342 1.564 sum 3.858 -6.362 -18.196 19.658 Atomic orbital electron populations 1.22169 0.92314 1.05544 1.02350 1.22627 0.96738 0.72357 1.08117 1.48846 1.42061 1.14319 0.98705 1.73891 1.19042 1.05141 1.15692 1.23634 1.00679 0.94523 0.92340 1.20273 1.02801 0.92357 0.96794 1.23081 1.10939 0.93888 0.94996 1.16952 0.77419 0.85639 0.81241 1.90786 1.51213 1.24043 1.75501 1.47994 1.68652 1.10033 1.04866 1.22181 0.98164 0.83116 0.98212 1.22366 0.97417 1.00273 0.97712 1.20465 0.89172 0.93478 0.91198 0.93145 1.42658 1.19315 1.44240 1.30866 1.19646 1.01223 1.12419 1.02854 0.90560 1.25435 0.97268 1.01357 1.02556 1.69820 1.09775 1.39987 1.42588 0.85172 0.77443 0.78227 0.79533 1.18990 1.22561 1.22504 1.22134 0.97600 0.97991 0.98305 1.21247 0.97748 0.86201 0.90463 0.92960 1.22078 1.03032 0.94484 0.98223 1.74280 1.15583 1.04824 1.15703 0.86398 0.93383 0.92112 0.84475 0.85639 0.89030 0.89050 0.89499 0.93853 0.86032 0.91834 0.91248 0.79434 0.94341 0.89793 0.90602 0.91098 0.92484 0.92387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.13 10.24 71.98 0.74 -1.40 16 2 C 0.12 1.64 7.24 86.38 0.63 2.26 16 3 N -0.14 -3.23 3.94 -187.48 -0.74 -3.97 16 4 N -0.30 -7.47 12.01 -46.59 -0.56 -8.03 16 5 C 0.05 1.37 7.39 43.32 0.32 1.69 16 6 C -0.06 -1.32 10.06 71.23 0.72 -0.60 16 7 C -0.07 -2.12 6.88 42.24 0.29 -1.83 16 8 C 0.60 20.27 7.61 86.77 0.66 20.93 16 9 O -0.54 -18.38 10.57 -3.90 -0.04 -18.42 16 10 N -0.58 -20.27 2.97 -798.45 -2.37 -22.64 16 11 C 0.11 3.79 5.89 86.36 0.51 4.30 16 12 C -0.14 -4.72 5.78 30.70 0.18 -4.54 16 13 C 0.17 6.33 3.10 45.04 0.14 6.47 16 14 H 0.05 1.93 8.08 -2.39 -0.02 1.92 16 15 N -0.73 -35.38 4.31 -322.69 -1.39 -36.77 16 16 C -0.23 -12.30 9.93 84.04 0.83 -11.47 16 17 H 0.08 3.93 7.83 -2.91 -0.02 3.91 16 18 C -0.07 -4.18 5.50 84.87 0.47 -3.71 16 19 N -0.97 -58.92 13.06 21.65 0.28 -58.64 16 20 Si 0.97 45.64 29.55 68.60 2.03 47.67 16 21 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 22 H -0.30 -14.24 7.11 99.48 0.71 -13.54 16 23 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 24 C -0.12 -4.00 5.07 30.67 0.16 -3.85 16 25 C 0.15 5.08 3.19 44.98 0.14 5.23 16 26 H 0.05 2.14 6.65 -2.38 -0.02 2.12 16 27 C -0.12 -3.75 7.59 71.98 0.55 -3.20 16 28 N -0.26 -7.46 8.64 -48.16 -0.42 -7.87 16 29 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.14 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.13 1.41 8.14 -2.38 -0.02 1.39 16 34 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.09 2.00 6.67 -2.39 -0.02 1.99 16 37 H 0.04 1.87 7.74 -2.39 -0.02 1.85 16 38 H 0.12 4.01 4.14 -22.89 -0.09 3.92 16 39 H 0.06 2.29 8.14 -2.38 -0.02 2.27 16 40 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 41 H 0.37 19.71 6.07 -92.70 -0.56 19.15 16 42 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 43 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 44 H 0.08 2.49 8.14 -2.38 -0.02 2.47 16 45 H 0.07 2.19 6.75 -2.39 -0.02 2.17 16 46 H 0.06 1.90 6.75 -2.39 -0.02 1.88 16 47 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 Total: -1.00 -68.15 368.54 3.45 -64.70 By element: Atomic # 1 Polarization: 33.35 SS G_CDS: 0.34 Total: 33.69 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: 6.32 Total: 10.29 kcal Atomic # 7 Polarization: -132.73 SS G_CDS: -5.20 Total: -137.93 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: -0.04 Total: -18.42 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -68.15 3.45 -64.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044883854.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.024 kcal (2) G-P(sol) polarization free energy of solvation -68.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds