Wall clock time and date at job start Fri Apr 10 2020 18:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46494 * 120.00336 * 2 1 4 4 C 1.34778 * 119.99729 * 180.02562 * 2 1 3 5 5 O 1.21286 * 119.99809 * 359.97438 * 4 2 1 6 6 C 1.50700 * 120.00109 * 179.97438 * 4 2 1 7 7 H 1.08995 * 115.56369 * 77.75993 * 6 4 2 8 8 C 1.53000 * 117.49412 * 292.06818 * 6 4 2 9 9 C 1.53003 * 60.03145 * 252.52062 * 8 6 4 10 10 H 1.08997 * 117.50242 * 252.47746 * 9 8 6 11 11 C 1.50706 * 117.49412 * 107.47720 * 9 8 6 12 12 O 1.21277 * 120.00448 * 353.52219 * 11 9 8 13 13 N 1.34782 * 119.99554 * 173.52083 * 11 9 8 14 14 C 1.46667 * 125.33367 * 180.02562 * 13 11 9 15 15 C 1.53731 * 107.94124 * 180.54426 * 14 13 11 16 16 H 1.08998 * 112.55971 * 139.72006 * 15 14 13 17 17 C 1.53686 * 109.34207 * 266.25438 * 15 14 13 18 18 N 1.47177 * 107.73271 * 128.69504 * 17 15 14 19 19 C 1.36939 * 125.25404 * 180.39812 * 18 17 15 20 20 H 1.07992 * 119.99999 * 179.13331 * 19 18 17 21 21 C 1.38817 * 119.99767 * 359.13913 * 19 18 17 22 22 N 1.31618 * 120.00298 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99586 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47410 * 59.99762 * 23 21 19 25 25 H 1.48504 * 109.47210 * 179.97438 * 23 21 19 26 26 H 1.48505 * 109.47182 * 299.99524 * 23 21 19 27 27 C 1.46739 * 109.41167 * 359.64931 * 18 17 15 28 28 C 1.53933 * 106.72491 * 342.40861 * 27 18 17 29 29 H 1.08992 * 113.01568 * 150.83003 * 28 27 18 30 30 C 1.46776 * 125.33777 * 359.69624 * 13 11 9 31 31 H 1.09009 * 109.46589 * 270.00103 * 1 2 3 32 32 H 1.09001 * 109.46927 * 29.99417 * 1 2 3 33 33 H 1.08996 * 109.47858 * 150.00018 * 1 2 3 34 34 H 1.09001 * 109.47256 * 270.00219 * 3 2 1 35 35 H 1.08998 * 109.47271 * 30.00066 * 3 2 1 36 36 H 1.08993 * 109.47237 * 150.00639 * 3 2 1 37 37 H 1.09003 * 117.49459 * 145.02489 * 8 6 4 38 38 H 1.08995 * 117.50147 * 0.02562 * 8 6 4 39 39 H 1.08994 * 109.77221 * 300.16565 * 14 13 11 40 40 H 1.09006 * 109.77438 * 60.90984 * 14 13 11 41 41 H 1.08998 * 109.76177 * 247.19368 * 17 15 14 42 42 H 1.08994 * 109.76296 * 7.91430 * 17 15 14 43 43 H 0.96996 * 120.00202 * 180.02562 * 22 21 19 44 44 H 1.09000 * 110.01233 * 223.08921 * 27 18 17 45 45 H 1.09000 * 110.04419 * 101.74227 * 27 18 17 46 46 H 1.09001 * 110.02735 * 280.77285 * 30 13 11 47 47 H 1.08998 * 110.02707 * 42.19074 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.1388 -1.1672 -0.0005 5 8 1.5323 -2.2176 -0.0005 6 6 3.6458 -1.1673 -0.0011 7 1 4.1166 -0.9591 0.9597 8 6 4.3517 -0.6572 -1.2590 9 6 4.3521 -2.1527 -0.9357 10 1 5.2875 -2.5927 -0.5902 11 6 3.4869 -3.0482 -1.7847 12 8 2.7365 -2.5653 -2.6059 13 7 3.5473 -4.3859 -1.6313 14 6 2.7617 -5.3633 -2.3920 15 6 3.1337 -6.7666 -1.8863 16 1 2.2686 -7.4245 -1.8044 17 6 4.2496 -7.3467 -2.7695 18 7 5.3288 -7.8094 -1.8821 19 6 6.5019 -8.3816 -2.2962 20 1 7.2439 -8.6783 -1.5698 21 6 6.7374 -8.5802 -3.6498 22 7 5.8329 -8.2190 -4.5351 23 14 8.3374 -9.3615 -4.2146 24 1 8.4602 -10.7193 -3.6260 25 1 8.3431 -9.4623 -5.6962 26 1 9.4808 -8.5243 -3.7706 27 6 4.9595 -7.5457 -0.4867 28 6 3.8233 -6.5077 -0.5177 29 1 3.1435 -6.5944 0.3299 30 6 4.4146 -5.0932 -0.6816 31 1 -0.3633 0.0000 1.0278 32 1 -0.3633 0.8900 -0.5137 33 1 -0.3635 -0.8899 -0.5138 34 1 2.3792 1.5833 -1.0277 35 1 1.6086 2.0283 0.5138 36 1 3.1500 1.1382 0.5137 37 1 5.2869 -0.1133 -1.1258 38 1 3.7262 -0.3211 -2.0859 39 1 1.6982 -5.1844 -2.2343 40 1 2.9963 -5.2794 -3.4532 41 1 3.8677 -8.1965 -3.3352 42 1 4.6128 -6.5810 -3.4549 43 1 5.9973 -8.3582 -5.4809 44 1 5.8155 -7.1455 0.0565 45 1 4.6130 -8.4638 -0.0121 46 1 5.4292 -5.1528 -1.0755 47 1 4.4161 -4.5770 0.2784 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049060638.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:18 Heat of formation + Delta-G solvation = 1.882587 kcal Electronic energy + Delta-G solvation = -28341.755470 eV Core-core repulsion = 24526.754084 eV Total energy + Delta-G solvation = -3815.001385 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.69731 -39.62924 -38.16160 -35.95963 -35.63357 -34.76835 -32.19056 -30.33989 -29.32344 -28.58904 -26.82686 -25.93836 -25.39308 -24.12608 -23.47048 -22.14158 -20.06038 -19.79571 -19.19800 -18.45854 -17.67125 -16.80438 -16.45825 -16.14997 -16.13108 -15.58498 -14.91133 -14.66825 -14.56374 -14.15107 -13.68933 -13.44229 -13.14578 -13.02126 -12.91363 -12.76907 -12.63256 -12.55442 -12.28917 -12.18616 -11.92836 -11.76552 -11.40198 -11.37916 -10.88289 -10.87449 -10.77989 -10.69089 -10.31242 -10.08133 -10.02408 -9.94036 -9.77676 -9.58593 -9.48064 -8.87439 -8.57680 -8.12593 -6.80924 -5.69623 -3.03480 2.45259 2.59008 2.90976 3.30268 3.41292 3.45553 3.47252 3.71691 4.26173 4.50602 4.52404 4.57657 4.72812 4.80096 4.92134 5.02104 5.03978 5.13359 5.21235 5.35141 5.36556 5.37791 5.44985 5.52619 5.54527 5.64991 5.72004 5.74189 5.82360 5.84231 5.99770 6.08106 6.24312 6.26875 6.39957 6.48366 6.62886 6.66296 6.76924 6.89410 7.13126 7.59042 7.63099 7.84578 7.96553 8.06409 8.28347 8.54376 9.23497 9.84649 10.49088 11.41733 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.024787 B = 0.003063 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.346748 B = 9138.841652 C = 9431.250424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.621 5.621 3 C 0.082 3.918 4 C 0.544 3.456 5 O -0.517 6.517 6 C -0.160 4.160 7 H 0.139 0.861 8 C -0.130 4.130 9 C -0.155 4.155 10 H 0.132 0.868 11 C 0.565 3.435 12 O -0.548 6.548 13 N -0.597 5.597 14 C 0.124 3.876 15 C -0.123 4.123 16 H 0.090 0.910 17 C 0.186 3.814 18 N -0.603 5.603 19 C -0.230 4.230 20 H 0.077 0.923 21 C -0.007 4.007 22 N -0.921 5.921 23 Si 0.912 3.088 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.286 1.286 27 C 0.147 3.853 28 C -0.110 4.110 29 H 0.088 0.912 30 C 0.114 3.886 31 H 0.052 0.948 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.057 0.943 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.114 0.886 38 H 0.111 0.889 39 H 0.058 0.942 40 H 0.070 0.930 41 H 0.046 0.954 42 H 0.050 0.950 43 H 0.253 0.747 44 H 0.036 0.964 45 H 0.021 0.979 46 H 0.076 0.924 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.161 18.977 11.730 23.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.356 5.356 3 C -0.061 4.061 4 C 0.331 3.669 5 O -0.392 6.392 6 C -0.182 4.182 7 H 0.157 0.843 8 C -0.167 4.167 9 C -0.177 4.177 10 H 0.150 0.850 11 C 0.353 3.647 12 O -0.426 6.426 13 N -0.328 5.328 14 C 0.002 3.998 15 C -0.143 4.143 16 H 0.108 0.892 17 C 0.061 3.939 18 N -0.330 5.330 19 C -0.358 4.358 20 H 0.095 0.905 21 C -0.204 4.204 22 N -0.568 5.568 23 Si 0.742 3.258 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.212 1.212 27 C 0.020 3.980 28 C -0.130 4.130 29 H 0.107 0.893 30 C -0.009 4.009 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.076 0.924 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.132 0.868 38 H 0.130 0.870 39 H 0.076 0.924 40 H 0.089 0.911 41 H 0.064 0.936 42 H 0.068 0.932 43 H 0.063 0.937 44 H 0.054 0.946 45 H 0.038 0.962 46 H 0.095 0.905 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.813 18.661 11.058 22.736 hybrid contribution 0.947 -0.376 -0.232 1.045 sum -5.866 18.285 10.826 22.044 Atomic orbital electron populations 1.21611 0.79080 1.03284 1.01535 1.47606 1.06985 1.06268 1.74705 1.21782 0.97204 0.85071 1.02076 1.19601 0.88285 0.83351 0.75707 1.90755 1.69563 1.30922 1.47940 1.22190 0.92364 1.05907 0.97719 0.84334 1.23107 1.02296 0.94094 0.97253 1.22322 1.01119 0.92484 1.01729 0.85044 1.18809 0.82152 0.80932 0.82777 1.90647 1.40553 1.74306 1.37144 1.47960 1.41595 1.04664 1.38582 1.21770 0.94721 0.87177 0.96146 1.23149 1.00209 0.94959 0.95957 0.89223 1.21202 0.84724 0.97826 0.90116 1.44351 1.17977 1.71366 0.99315 1.18985 0.92986 1.32618 0.91261 0.90470 1.24803 0.98354 1.01374 0.95821 1.69950 1.33774 1.52331 1.00734 0.86204 0.82908 0.79112 0.77529 1.21185 1.21644 1.21226 1.21138 0.93897 0.94286 0.88640 1.22919 0.98056 0.94159 0.97827 0.89343 1.22077 0.94724 0.92065 0.91989 0.92916 0.91329 0.90436 0.92422 0.91211 0.90770 0.86811 0.87047 0.92393 0.91136 0.93583 0.93207 0.93670 0.94587 0.96177 0.90544 0.91770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.82 10.44 59.85 0.62 1.44 16 2 N -0.62 -6.51 3.27 -189.52 -0.62 -7.13 16 3 C 0.08 0.51 9.71 59.84 0.58 1.09 16 4 C 0.54 7.48 6.54 -10.98 -0.07 7.41 16 5 O -0.52 -9.46 15.00 2.45 0.04 -9.43 16 6 C -0.16 -1.72 4.52 -91.73 -0.41 -2.13 16 7 H 0.14 1.03 8.14 -51.93 -0.42 0.61 16 8 C -0.13 -1.30 8.97 -26.73 -0.24 -1.54 16 9 C -0.16 -2.05 5.41 -91.73 -0.50 -2.55 16 10 H 0.13 1.49 7.55 -51.93 -0.39 1.10 16 11 C 0.57 10.37 5.86 -10.98 -0.06 10.31 16 12 O -0.55 -11.69 15.95 2.45 0.04 -11.65 16 13 N -0.60 -11.12 3.31 -172.15 -0.57 -11.69 16 14 C 0.12 2.41 6.23 -3.57 -0.02 2.39 16 15 C -0.12 -2.38 4.01 -88.60 -0.36 -2.73 16 16 H 0.09 1.60 8.14 -51.93 -0.42 1.17 16 17 C 0.19 4.52 4.77 -3.32 -0.02 4.50 16 18 N -0.60 -15.16 3.39 -171.51 -0.58 -15.74 16 19 C -0.23 -6.34 10.25 -15.06 -0.15 -6.49 16 20 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 21 C -0.01 -0.20 5.48 -17.43 -0.10 -0.30 16 22 N -0.92 -27.13 10.25 55.49 0.57 -26.56 16 23 Si 0.91 22.10 29.55 -169.99 -5.02 17.08 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 26 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 27 C 0.15 2.95 6.41 -3.43 -0.02 2.93 16 28 C -0.11 -1.92 4.14 -88.23 -0.37 -2.29 16 29 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 30 C 0.11 1.93 5.56 -3.28 -0.02 1.91 16 31 H 0.05 0.43 8.14 -51.92 -0.42 0.01 16 32 H 0.07 0.46 8.07 -51.93 -0.42 0.04 16 33 H 0.08 0.93 7.42 -51.93 -0.39 0.54 16 34 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 0.29 8.07 -51.93 -0.42 -0.13 16 36 H 0.07 0.36 6.80 -51.93 -0.35 0.01 16 37 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.11 1.31 7.68 -51.93 -0.40 0.91 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.07 1.48 7.44 -51.93 -0.39 1.09 16 41 H 0.05 1.25 7.40 -51.93 -0.38 0.86 16 42 H 0.05 1.36 6.58 -51.93 -0.34 1.02 16 43 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 44 H 0.04 0.69 7.97 -51.93 -0.41 0.28 16 45 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 46 H 0.08 1.42 7.76 -51.93 -0.40 1.01 16 47 H 0.06 0.92 7.76 -51.93 -0.40 0.52 16 LS Contribution 372.14 15.07 5.61 5.61 Total: -1.00 -36.32 372.14 -9.30 -45.62 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -7.63 Total: -0.06 kcal Atomic # 6 Polarization: 15.09 SS G_CDS: -1.13 Total: 13.96 kcal Atomic # 7 Polarization: -59.92 SS G_CDS: -1.20 Total: -61.13 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: 0.08 Total: -21.08 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -36.32 -9.30 -45.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049060638.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.506 kcal (2) G-P(sol) polarization free energy of solvation -36.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds