Wall clock time and date at job start Fri Apr 10 2020 18:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46494 * 120.00336 * 2 1 4 4 C 1.34778 * 119.99729 * 180.02562 * 2 1 3 5 5 O 1.21286 * 119.99809 * 359.97438 * 4 2 1 6 6 C 1.50700 * 120.00109 * 179.97438 * 4 2 1 7 7 H 1.08995 * 115.56369 * 77.75993 * 6 4 2 8 8 C 1.53000 * 117.49412 * 292.06818 * 6 4 2 9 9 C 1.53003 * 60.03145 * 252.52062 * 8 6 4 10 10 H 1.08997 * 117.50242 * 252.47746 * 9 8 6 11 11 C 1.50706 * 117.49412 * 107.47720 * 9 8 6 12 12 O 1.21277 * 120.00448 * 353.52219 * 11 9 8 13 13 N 1.34782 * 119.99554 * 173.52083 * 11 9 8 14 14 C 1.46667 * 125.33367 * 180.02562 * 13 11 9 15 15 C 1.53731 * 107.94124 * 180.54426 * 14 13 11 16 16 H 1.08998 * 112.55971 * 139.72006 * 15 14 13 17 17 C 1.53686 * 109.34207 * 266.25438 * 15 14 13 18 18 N 1.47177 * 107.73271 * 128.69504 * 17 15 14 19 19 C 1.36939 * 125.25404 * 180.39812 * 18 17 15 20 20 H 1.07992 * 119.99999 * 179.13331 * 19 18 17 21 21 C 1.38817 * 119.99767 * 359.13913 * 19 18 17 22 22 N 1.31618 * 120.00298 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99586 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47410 * 59.99762 * 23 21 19 25 25 H 1.48504 * 109.47210 * 179.97438 * 23 21 19 26 26 H 1.48505 * 109.47182 * 299.99524 * 23 21 19 27 27 C 1.46739 * 109.41167 * 359.64931 * 18 17 15 28 28 C 1.53933 * 106.72491 * 342.40861 * 27 18 17 29 29 H 1.08992 * 113.01568 * 150.83003 * 28 27 18 30 30 C 1.46776 * 125.33777 * 359.69624 * 13 11 9 31 31 H 1.09009 * 109.46589 * 270.00103 * 1 2 3 32 32 H 1.09001 * 109.46927 * 29.99417 * 1 2 3 33 33 H 1.08996 * 109.47858 * 150.00018 * 1 2 3 34 34 H 1.09001 * 109.47256 * 270.00219 * 3 2 1 35 35 H 1.08998 * 109.47271 * 30.00066 * 3 2 1 36 36 H 1.08993 * 109.47237 * 150.00639 * 3 2 1 37 37 H 1.09003 * 117.49459 * 145.02489 * 8 6 4 38 38 H 1.08995 * 117.50147 * 0.02562 * 8 6 4 39 39 H 1.08994 * 109.77221 * 300.16565 * 14 13 11 40 40 H 1.09006 * 109.77438 * 60.90984 * 14 13 11 41 41 H 1.08998 * 109.76177 * 247.19368 * 17 15 14 42 42 H 1.08994 * 109.76296 * 7.91430 * 17 15 14 43 43 H 0.96996 * 120.00202 * 180.02562 * 22 21 19 44 44 H 1.09000 * 110.01233 * 223.08921 * 27 18 17 45 45 H 1.09000 * 110.04419 * 101.74227 * 27 18 17 46 46 H 1.09001 * 110.02735 * 280.77285 * 30 13 11 47 47 H 1.08998 * 110.02707 * 42.19074 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.1388 -1.1672 -0.0005 5 8 1.5323 -2.2176 -0.0005 6 6 3.6458 -1.1673 -0.0011 7 1 4.1166 -0.9591 0.9597 8 6 4.3517 -0.6572 -1.2590 9 6 4.3521 -2.1527 -0.9357 10 1 5.2875 -2.5927 -0.5902 11 6 3.4869 -3.0482 -1.7847 12 8 2.7365 -2.5653 -2.6059 13 7 3.5473 -4.3859 -1.6313 14 6 2.7617 -5.3633 -2.3920 15 6 3.1337 -6.7666 -1.8863 16 1 2.2686 -7.4245 -1.8044 17 6 4.2496 -7.3467 -2.7695 18 7 5.3288 -7.8094 -1.8821 19 6 6.5019 -8.3816 -2.2962 20 1 7.2439 -8.6783 -1.5698 21 6 6.7374 -8.5802 -3.6498 22 7 5.8329 -8.2190 -4.5351 23 14 8.3374 -9.3615 -4.2146 24 1 8.4602 -10.7193 -3.6260 25 1 8.3431 -9.4623 -5.6962 26 1 9.4808 -8.5243 -3.7706 27 6 4.9595 -7.5457 -0.4867 28 6 3.8233 -6.5077 -0.5177 29 1 3.1435 -6.5944 0.3299 30 6 4.4146 -5.0932 -0.6816 31 1 -0.3633 0.0000 1.0278 32 1 -0.3633 0.8900 -0.5137 33 1 -0.3635 -0.8899 -0.5138 34 1 2.3792 1.5833 -1.0277 35 1 1.6086 2.0283 0.5138 36 1 3.1500 1.1382 0.5137 37 1 5.2869 -0.1133 -1.1258 38 1 3.7262 -0.3211 -2.0859 39 1 1.6982 -5.1844 -2.2343 40 1 2.9963 -5.2794 -3.4532 41 1 3.8677 -8.1965 -3.3352 42 1 4.6128 -6.5810 -3.4549 43 1 5.9973 -8.3582 -5.4809 44 1 5.8155 -7.1455 0.0565 45 1 4.6130 -8.4638 -0.0121 46 1 5.4292 -5.1528 -1.0755 47 1 4.4161 -4.5770 0.2784 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049060638.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:17 Heat of formation + Delta-G solvation = -23.305169 kcal Electronic energy + Delta-G solvation = -28342.847693 eV Core-core repulsion = 24526.754084 eV Total energy + Delta-G solvation = -3816.093609 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.86019 -40.93670 -39.54397 -37.05753 -36.53958 -36.44985 -34.09137 -32.00302 -31.08513 -29.30184 -27.82898 -27.40127 -27.04229 -25.62163 -24.30259 -23.53906 -21.83638 -20.82221 -20.78534 -19.66688 -18.88901 -18.57149 -17.71903 -17.34460 -17.09625 -16.80723 -16.48702 -15.94332 -15.78383 -15.55296 -15.49121 -14.73115 -14.52819 -14.27728 -14.07821 -13.93802 -13.61809 -13.49901 -13.44446 -13.36488 -13.26943 -13.09552 -12.92440 -12.89195 -12.72559 -12.64713 -12.02838 -11.91602 -11.86355 -11.73915 -11.61656 -11.50678 -11.35770 -11.08731 -10.77859 -10.66046 -9.67330 -9.61988 -8.87035 -7.83137 -5.18729 1.37726 1.46367 1.49781 1.56022 1.59335 1.95830 2.10493 2.51088 2.73933 3.25406 3.35069 3.46143 3.56561 3.61003 3.71319 3.79458 3.90274 3.96778 4.20481 4.25774 4.31620 4.38704 4.39665 4.48164 4.48348 4.54633 4.66596 4.71683 4.79116 4.80346 4.81391 4.87346 4.90398 4.97130 5.03504 5.05387 5.08969 5.29104 5.37850 5.49537 5.52544 5.61559 5.76042 6.20986 6.32893 6.57274 7.10829 7.12910 7.17227 7.80466 8.43494 9.27088 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.024787 B = 0.003063 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.346748 B = 9138.841652 C = 9431.250424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.619 5.619 3 C 0.073 3.927 4 C 0.526 3.474 5 O -0.578 6.578 6 C -0.141 4.141 7 H 0.184 0.816 8 C -0.107 4.107 9 C -0.183 4.183 10 H 0.154 0.846 11 C 0.553 3.447 12 O -0.592 6.592 13 N -0.605 5.605 14 C 0.130 3.870 15 C -0.113 4.113 16 H 0.108 0.892 17 C 0.203 3.797 18 N -0.623 5.623 19 C -0.238 4.238 20 H 0.089 0.911 21 C -0.070 4.070 22 N -0.954 5.954 23 Si 0.979 3.021 24 H -0.276 1.276 25 H -0.300 1.300 26 H -0.275 1.275 27 C 0.143 3.857 28 C -0.095 4.095 29 H 0.125 0.875 30 C 0.120 3.880 31 H 0.066 0.934 32 H 0.096 0.904 33 H 0.041 0.959 34 H 0.060 0.940 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.160 0.840 38 H 0.088 0.912 39 H 0.059 0.941 40 H 0.039 0.961 41 H 0.006 0.994 42 H 0.008 0.992 43 H 0.244 0.756 44 H 0.053 0.947 45 H 0.031 0.969 46 H 0.057 0.943 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.673 21.137 14.975 26.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.352 5.352 3 C -0.069 4.069 4 C 0.314 3.686 5 O -0.457 6.457 6 C -0.162 4.162 7 H 0.201 0.799 8 C -0.144 4.144 9 C -0.204 4.204 10 H 0.172 0.828 11 C 0.344 3.656 12 O -0.473 6.473 13 N -0.337 5.337 14 C 0.006 3.994 15 C -0.133 4.133 16 H 0.126 0.874 17 C 0.077 3.923 18 N -0.350 5.350 19 C -0.367 4.367 20 H 0.106 0.894 21 C -0.262 4.262 22 N -0.603 5.603 23 Si 0.807 3.193 24 H -0.202 1.202 25 H -0.227 1.227 26 H -0.200 1.200 27 C 0.018 3.982 28 C -0.114 4.114 29 H 0.143 0.857 30 C -0.002 4.002 31 H 0.084 0.916 32 H 0.115 0.885 33 H 0.060 0.940 34 H 0.079 0.921 35 H 0.112 0.888 36 H 0.113 0.887 37 H 0.178 0.822 38 H 0.107 0.893 39 H 0.077 0.923 40 H 0.058 0.942 41 H 0.024 0.976 42 H 0.026 0.974 43 H 0.053 0.947 44 H 0.071 0.929 45 H 0.049 0.951 46 H 0.076 0.924 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -5.304 20.872 14.366 25.888 hybrid contribution 0.408 -0.984 -1.248 1.641 sum -4.896 19.888 13.118 24.323 Atomic orbital electron populations 1.21682 0.79029 1.02858 1.02279 1.47827 1.07504 1.07042 1.72864 1.22107 0.98228 0.83505 1.03014 1.20290 0.89794 0.83399 0.75121 1.90722 1.70898 1.33089 1.50974 1.22354 0.90445 1.03727 0.99674 0.79942 1.23268 1.03554 0.91570 0.96003 1.22397 1.01451 0.93317 1.03247 0.82790 1.19841 0.82030 0.81063 0.82659 1.90608 1.42612 1.74968 1.39145 1.48145 1.41671 1.05072 1.38764 1.21552 0.95037 0.87906 0.94861 1.22980 0.99211 0.94695 0.96388 0.87385 1.20789 0.85964 0.95138 0.90362 1.44640 1.17499 1.71145 1.01679 1.19445 0.93933 1.31659 0.91616 0.89351 1.25677 1.01677 1.02687 0.96174 1.70208 1.35716 1.54045 1.00370 0.85146 0.79297 0.78598 0.76257 1.20153 1.22660 1.20044 1.21341 0.95401 0.95478 0.85984 1.22968 0.97306 0.93726 0.97440 0.85748 1.22087 0.93187 0.91957 0.93006 0.91584 0.88526 0.94028 0.92112 0.88768 0.88685 0.82182 0.89311 0.92307 0.94221 0.97580 0.97370 0.94684 0.92905 0.95086 0.92445 0.88087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.51 10.44 127.77 1.33 2.85 16 2 N -0.62 -11.87 3.27 -871.90 -2.85 -14.73 16 3 C 0.07 0.64 9.71 127.77 1.24 1.88 16 4 C 0.53 13.78 6.54 87.66 0.57 14.35 16 5 O -0.58 -21.36 15.00 -0.08 0.00 -21.36 16 6 C -0.14 -2.54 4.52 -11.52 -0.05 -2.59 16 7 H 0.18 1.66 8.14 -2.39 -0.02 1.64 16 8 C -0.11 -1.78 8.97 30.60 0.27 -1.50 16 9 C -0.18 -4.42 5.41 -11.51 -0.06 -4.49 16 10 H 0.15 2.96 7.55 -2.39 -0.02 2.95 16 11 C 0.55 20.49 5.86 87.66 0.51 21.00 16 12 O -0.59 -26.36 15.95 -0.05 0.00 -26.36 16 13 N -0.61 -22.79 3.31 -816.95 -2.71 -25.50 16 14 C 0.13 5.28 6.23 86.59 0.54 5.82 16 15 C -0.11 -4.43 4.01 -9.48 -0.04 -4.47 16 16 H 0.11 3.83 8.14 -2.39 -0.02 3.81 16 17 C 0.20 10.34 4.77 86.48 0.41 10.75 16 18 N -0.62 -31.64 3.39 -696.54 -2.36 -34.00 16 19 C -0.24 -13.17 10.25 84.03 0.86 -12.31 16 20 H 0.09 4.58 7.83 -2.91 -0.02 4.56 16 21 C -0.07 -4.00 5.48 84.86 0.47 -3.53 16 22 N -0.95 -58.99 10.25 21.65 0.22 -58.77 16 23 Si 0.98 46.15 29.55 68.60 2.03 48.17 16 24 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 25 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 26 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 27 C 0.14 5.49 6.41 86.65 0.56 6.05 16 28 C -0.09 -3.14 4.14 -9.25 -0.04 -3.18 16 29 H 0.12 3.34 8.14 -2.39 -0.02 3.32 16 30 C 0.12 3.86 5.56 86.73 0.48 4.34 16 31 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 32 H 0.10 1.14 8.07 -2.39 -0.02 1.12 16 33 H 0.04 1.05 7.42 -2.39 -0.02 1.03 16 34 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.09 0.40 8.07 -2.39 -0.02 0.38 16 36 H 0.09 0.46 6.80 -2.39 -0.02 0.44 16 37 H 0.16 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.09 1.95 7.68 -2.39 -0.02 1.93 16 39 H 0.06 2.35 8.14 -2.39 -0.02 2.34 16 40 H 0.04 1.82 7.44 -2.38 -0.02 1.81 16 41 H 0.01 0.35 7.40 -2.39 -0.02 0.33 16 42 H 0.01 0.48 6.58 -2.39 -0.02 0.46 16 43 H 0.24 14.84 8.31 -92.71 -0.77 14.07 16 44 H 0.05 1.88 7.97 -2.39 -0.02 1.86 16 45 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 46 H 0.06 2.07 7.76 -2.39 -0.02 2.06 16 47 H 0.10 2.54 7.76 -2.39 -0.02 2.52 16 Total: -1.00 -86.62 372.14 2.34 -84.28 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: 0.96 Total: 13.30 kcal Atomic # 6 Polarization: 27.91 SS G_CDS: 7.06 Total: 34.97 kcal Atomic # 7 Polarization: -125.30 SS G_CDS: -7.70 Total: -133.00 kcal Atomic # 8 Polarization: -47.72 SS G_CDS: 0.00 Total: -47.73 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.17 kcal Total: -86.62 2.34 -84.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049060638.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.974 kcal (2) G-P(sol) polarization free energy of solvation -86.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds