Wall clock time and date at job start Fri Apr 10 2020 18:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46496 * 109.46970 * 2 1 4 4 C 1.35318 * 125.86318 * 125.29506 * 3 2 1 5 5 C 1.35350 * 106.17304 * 180.18907 * 4 3 2 6 6 C 1.50701 * 126.75080 * 179.85483 * 5 4 3 7 7 C 1.50704 * 109.47008 * 124.71280 * 6 5 4 8 8 O 1.21276 * 119.99854 * 359.97438 * 7 6 5 9 9 N 1.34781 * 119.99668 * 180.02562 * 7 6 5 10 10 C 1.46501 * 119.99828 * 180.02562 * 9 7 6 11 11 H 1.09005 * 109.49275 * 324.92747 * 10 9 7 12 12 C 1.53036 * 109.52069 * 204.85316 * 10 9 7 13 13 C 1.53041 * 109.53554 * 301.38881 * 12 10 9 14 14 C 1.53622 * 109.24380 * 298.51477 * 13 12 10 15 15 H 1.09000 * 109.73931 * 295.11518 * 14 13 12 16 16 C 1.53004 * 109.66053 * 174.54817 * 14 13 12 17 17 N 1.46920 * 108.54182 * 54.85945 * 14 13 12 18 18 C 1.36938 * 120.63045 * 126.37020 * 17 14 13 19 19 H 1.08000 * 120.00136 * 330.81972 * 18 17 14 20 20 C 1.38816 * 119.99764 * 150.82485 * 18 17 14 21 21 N 1.31616 * 119.99997 * 344.72356 * 20 18 17 22 22 Si 1.86801 * 119.99954 * 165.00576 * 20 18 17 23 23 H 1.48504 * 109.47325 * 89.99446 * 22 20 18 24 24 H 1.48491 * 109.47313 * 209.99661 * 22 20 18 25 25 H 1.48503 * 109.46883 * 330.00034 * 22 20 18 26 26 C 1.46929 * 118.73799 * 306.08918 * 17 14 13 27 27 N 1.33771 * 106.49706 * 359.59108 * 5 4 3 28 28 N 1.28636 * 108.88363 * 0.26430 * 27 5 4 29 29 H 1.09005 * 109.46747 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47260 * 299.99326 * 1 2 3 31 31 H 1.09002 * 109.47380 * 59.99721 * 1 2 3 32 32 H 1.09006 * 109.46985 * 240.00448 * 2 1 3 33 33 H 1.08997 * 109.47058 * 120.00629 * 2 1 3 34 34 H 1.08004 * 126.91719 * 0.04033 * 4 3 2 35 35 H 1.08999 * 109.47192 * 4.70724 * 6 5 4 36 36 H 1.09000 * 109.46759 * 244.71102 * 6 5 4 37 37 H 0.96995 * 120.00226 * 359.97438 * 9 7 6 38 38 H 1.08995 * 109.46410 * 61.41364 * 12 10 9 39 39 H 1.08998 * 109.45716 * 181.38685 * 12 10 9 40 40 H 1.09006 * 109.49722 * 58.59647 * 13 12 10 41 41 H 1.09010 * 109.49458 * 178.68541 * 13 12 10 42 42 H 1.08996 * 109.47344 * 300.95238 * 16 14 13 43 43 H 1.09003 * 109.47024 * 60.95233 * 16 14 13 44 44 H 1.09000 * 109.46854 * 180.94782 * 16 14 13 45 45 H 0.97000 * 119.99524 * 180.02562 * 21 20 18 46 46 H 1.08998 * 109.58909 * 173.65261 * 26 17 14 47 47 H 1.08999 * 109.58577 * 293.93308 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8799 1.9174 0.8951 5 6 3.0530 3.2079 0.5253 6 6 3.9216 4.2328 1.2081 7 6 4.8924 4.8123 0.2116 8 8 4.8804 4.4304 -0.9393 9 7 5.7747 5.7544 0.6000 10 6 6.7180 6.3182 -0.3688 11 1 7.0199 5.5447 -1.0750 12 6 7.9511 6.8476 0.3668 13 6 7.5244 7.9104 1.3820 14 6 6.8638 9.0825 0.6405 15 1 7.5965 9.5721 -0.0010 16 6 6.3121 10.0874 1.6539 17 7 5.7644 8.5563 -0.1798 18 6 4.5014 9.0738 -0.0687 19 1 4.1712 9.4955 0.8691 20 6 3.6456 9.0563 -1.1616 21 7 4.1223 8.8293 -2.3672 22 14 1.8185 9.3628 -0.9221 23 1 1.5405 10.8166 -1.0419 24 1 1.0528 8.6253 -1.9588 25 1 1.4098 8.8901 0.4251 26 6 6.0470 7.4684 -1.1261 27 7 2.3058 3.3930 -0.5687 28 7 1.7053 2.2918 -0.8540 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8934 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.3358 1.4171 1.7367 35 1 4.4736 3.7586 2.0196 36 1 3.2958 5.0290 1.6110 37 1 5.7845 6.0595 1.5206 38 1 8.4445 6.0263 0.8866 39 1 8.6412 7.2890 -0.3522 40 1 6.8151 7.4763 2.0867 41 1 8.4003 8.2703 1.9219 42 1 5.5848 9.5924 2.2973 43 1 7.1292 10.4765 2.2613 44 1 5.8294 10.9091 1.1248 45 1 3.5243 8.8174 -3.1308 46 1 5.1150 7.1189 -1.5702 47 1 6.7124 7.8298 -1.9101 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071698640.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:23 Heat of formation + Delta-G solvation = 54.301305 kcal Electronic energy + Delta-G solvation = -28243.800416 eV Core-core repulsion = 24463.364828 eV Total energy + Delta-G solvation = -3780.435588 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.15895 -40.83931 -39.07286 -36.41411 -35.66062 -34.43264 -33.68399 -32.08502 -31.70619 -31.63970 -29.07112 -27.70919 -26.62147 -25.54135 -23.85999 -23.15003 -22.51826 -21.96059 -21.17115 -20.29557 -18.43888 -18.22374 -17.80964 -17.29468 -17.02399 -16.53977 -16.16587 -15.78885 -15.50984 -15.38868 -15.29757 -14.84004 -14.77241 -14.48291 -14.31503 -13.93618 -13.67435 -13.53998 -13.27321 -12.98604 -12.89769 -12.84282 -12.63232 -12.57418 -12.47511 -12.38449 -12.28380 -12.10566 -12.03687 -11.57971 -11.52753 -11.15873 -11.00041 -10.94289 -10.73839 -10.48436 -10.06090 -9.80263 -8.54143 -7.79131 -5.23858 0.73004 1.38289 1.44813 1.50383 1.53486 1.63154 1.92027 2.51821 2.60563 3.37844 3.39020 3.67824 3.71978 3.94710 3.98409 4.04885 4.15623 4.16455 4.22878 4.27389 4.32711 4.47101 4.55623 4.60797 4.70662 4.74139 4.76771 4.81751 4.88917 5.01494 5.04918 5.09451 5.12441 5.17202 5.18534 5.28948 5.32983 5.39579 5.62240 5.67716 5.74869 5.80983 5.81205 5.86844 6.47116 6.87286 7.21999 7.59900 7.64260 7.97744 8.47577 9.25456 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.013643 B = 0.004020 C = 0.003391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.872264 B = 6963.469651 C = 8255.359835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.102 3.898 3 N -0.289 5.289 4 C -0.022 4.022 5 C -0.034 4.034 6 C -0.045 4.045 7 C 0.505 3.495 8 O -0.587 6.587 9 N -0.692 5.692 10 C 0.132 3.868 11 H 0.055 0.945 12 C -0.108 4.108 13 C -0.117 4.117 14 C 0.151 3.849 15 H 0.009 0.991 16 C -0.128 4.128 17 N -0.593 5.593 18 C -0.232 4.232 19 H 0.081 0.919 20 C -0.054 4.054 21 N -0.938 5.938 22 Si 0.945 3.055 23 H -0.281 1.281 24 H -0.315 1.315 25 H -0.264 1.264 26 C 0.172 3.828 27 N -0.304 5.304 28 N -0.134 5.134 29 H 0.113 0.887 30 H 0.058 0.942 31 H 0.044 0.956 32 H 0.104 0.896 33 H 0.151 0.849 34 H 0.249 0.751 35 H 0.164 0.836 36 H 0.110 0.890 37 H 0.409 0.591 38 H 0.089 0.911 39 H 0.065 0.935 40 H 0.070 0.930 41 H 0.090 0.910 42 H 0.055 0.945 43 H 0.076 0.924 44 H 0.032 0.968 45 H 0.239 0.761 46 H 0.043 0.957 47 H -0.013 1.013 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.794 -18.511 17.600 25.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.017 4.017 3 N -0.083 5.083 4 C -0.174 4.174 5 C -0.174 4.174 6 C -0.087 4.087 7 C 0.292 3.708 8 O -0.467 6.467 9 N -0.344 5.344 10 C 0.025 3.975 11 H 0.074 0.926 12 C -0.146 4.146 13 C -0.155 4.155 14 C 0.046 3.954 15 H 0.027 0.973 16 C -0.185 4.185 17 N -0.316 5.316 18 C -0.362 4.362 19 H 0.098 0.902 20 C -0.249 4.249 21 N -0.585 5.585 22 Si 0.775 3.225 23 H -0.208 1.208 24 H -0.243 1.243 25 H -0.189 1.189 26 C 0.044 3.956 27 N -0.169 5.169 28 N -0.113 5.113 29 H 0.131 0.869 30 H 0.077 0.923 31 H 0.063 0.937 32 H 0.122 0.878 33 H 0.169 0.831 34 H 0.265 0.735 35 H 0.182 0.818 36 H 0.128 0.872 37 H 0.247 0.753 38 H 0.107 0.893 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.108 0.892 42 H 0.074 0.926 43 H 0.095 0.905 44 H 0.051 0.949 45 H 0.048 0.952 46 H 0.061 0.939 47 H 0.005 0.995 Dipole moment (debyes) X Y Z Total from point charges 1.844 -18.468 15.381 24.105 hybrid contribution -0.787 0.490 -0.177 0.943 sum 1.058 -17.979 15.204 23.569 Atomic orbital electron populations 1.22060 0.92779 1.04943 1.02364 1.22591 0.96989 0.74437 1.07683 1.47940 1.29753 1.12865 1.17726 1.24041 0.99074 0.93801 1.00474 1.21823 1.02895 0.96229 0.96471 1.19999 0.94698 0.97109 0.96848 1.21016 0.81248 0.79441 0.89123 1.90703 1.71003 1.62998 1.22008 1.45663 1.35552 1.39505 1.13651 1.21331 0.90044 0.94556 0.91544 0.92638 1.21644 0.94900 0.99319 0.98753 1.22017 1.00707 0.95538 0.97281 1.20897 0.89228 0.93603 0.91645 0.97320 1.21718 1.00735 0.98120 0.97940 1.44261 1.05218 1.37266 1.44903 1.19423 0.89578 1.32866 0.94373 0.90175 1.25694 1.01693 1.02430 0.95075 1.70159 1.33966 1.56219 0.98195 0.85591 0.82570 0.77170 0.77144 1.20816 1.24254 1.18864 1.20831 0.97499 0.87291 0.89944 1.75158 1.09674 1.17349 1.14753 1.78209 1.22639 0.93665 1.16747 0.86858 0.92292 0.93655 0.87797 0.83079 0.73508 0.81844 0.87180 0.75335 0.89250 0.91589 0.91148 0.89179 0.92598 0.90550 0.94913 0.95221 0.93854 0.99506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.90 10.04 71.98 0.72 -1.18 16 2 C 0.10 1.14 7.17 86.38 0.62 1.76 16 3 N -0.29 -6.86 3.44 -347.73 -1.20 -8.06 16 4 C -0.02 -0.45 11.49 83.49 0.96 0.51 16 5 C -0.03 -1.08 6.00 41.60 0.25 -0.83 16 6 C -0.05 -1.22 6.28 29.10 0.18 -1.04 16 7 C 0.50 19.33 7.79 87.66 0.68 20.02 16 8 O -0.59 -29.64 15.26 -3.02 -0.05 -29.68 16 9 N -0.69 -23.72 4.92 -442.17 -2.17 -25.90 16 10 C 0.13 5.16 2.81 45.07 0.13 5.28 16 11 H 0.06 2.36 7.58 -2.38 -0.02 2.34 16 12 C -0.11 -3.12 5.58 30.62 0.17 -2.94 16 13 C -0.12 -3.18 5.23 30.82 0.16 -3.02 16 14 C 0.15 5.74 3.51 45.12 0.16 5.90 16 15 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 16 C -0.13 -4.27 7.95 71.98 0.57 -3.70 16 17 N -0.59 -28.98 2.90 -674.44 -1.96 -30.94 16 18 C -0.23 -12.64 8.60 84.03 0.72 -11.91 16 19 H 0.08 4.11 6.21 -2.91 -0.02 4.09 16 20 C -0.05 -3.25 4.95 84.86 0.42 -2.83 16 21 N -0.94 -61.36 11.14 21.65 0.24 -61.12 16 22 Si 0.95 49.32 29.58 68.60 2.03 51.35 16 23 H -0.28 -14.11 7.11 99.48 0.71 -13.40 16 24 H -0.31 -17.62 7.11 99.48 0.71 -16.92 16 25 H -0.26 -12.86 7.11 99.48 0.71 -12.15 16 26 C 0.17 8.89 4.89 86.36 0.42 9.32 16 27 N -0.30 -13.11 11.82 -48.60 -0.57 -13.68 16 28 N -0.13 -4.92 12.91 37.02 0.48 -4.45 16 29 H 0.11 0.56 8.14 -2.38 -0.02 0.54 16 30 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.04 0.81 8.12 -2.39 -0.02 0.79 16 32 H 0.10 1.07 8.14 -2.38 -0.02 1.05 16 33 H 0.15 0.27 8.07 -2.39 -0.02 0.25 16 34 H 0.25 1.70 8.06 -2.91 -0.02 1.67 16 35 H 0.16 2.26 8.12 -2.39 -0.02 2.24 16 36 H 0.11 2.95 8.14 -2.39 -0.02 2.94 16 37 H 0.41 11.16 6.78 -92.71 -0.63 10.53 16 38 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.07 1.76 6.41 -2.38 -0.02 1.74 16 41 H 0.09 1.89 8.14 -2.38 -0.02 1.87 16 42 H 0.05 1.82 7.45 -2.39 -0.02 1.80 16 43 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 44 H 0.03 1.25 7.62 -2.39 -0.02 1.24 16 45 H 0.24 15.66 8.31 -92.71 -0.77 14.89 16 46 H 0.04 2.75 6.06 -2.39 -0.01 2.73 16 47 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 Total: -1.00 -96.04 375.80 3.31 -92.73 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: 0.34 Total: 14.42 kcal Atomic # 6 Polarization: 9.16 SS G_CDS: 6.17 Total: 15.33 kcal Atomic # 7 Polarization: -138.96 SS G_CDS: -5.18 Total: -144.15 kcal Atomic # 8 Polarization: -29.64 SS G_CDS: -0.05 Total: -29.68 kcal Atomic # 14 Polarization: 49.32 SS G_CDS: 2.03 Total: 51.35 kcal Total: -96.04 3.31 -92.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071698640.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.027 kcal (2) G-P(sol) polarization free energy of solvation -96.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds