Wall clock time and date at job start Fri Apr 10 2020 18:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 110.91782 * 2 1 4 4 C 1.54912 * 110.99964 * 236.09241 * 2 1 3 5 5 N 1.47428 * 104.83095 * 204.91758 * 4 2 1 6 6 C 1.36931 * 125.65100 * 204.09420 * 5 4 2 7 7 H 1.08002 * 120.00103 * 0.02562 * 6 5 4 8 8 C 1.38812 * 120.00429 * 179.97438 * 6 5 4 9 9 N 1.31624 * 119.99535 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 120.00484 * 179.97438 * 8 6 5 11 11 H 1.48493 * 109.47326 * 270.00576 * 10 8 6 12 12 H 1.48506 * 109.46545 * 30.00326 * 10 8 6 13 13 H 1.48498 * 109.47210 * 150.00037 * 10 8 6 14 14 C 1.47032 * 108.70123 * 24.35753 * 5 4 2 15 15 C 1.54327 * 107.26586 * 358.58848 * 14 5 4 16 16 H 1.09000 * 110.51881 * 96.45074 * 15 14 5 17 17 N 1.46500 * 110.84789 * 219.67541 * 15 14 5 18 18 C 1.34778 * 119.99572 * 268.69019 * 17 15 14 19 19 O 1.21599 * 120.00084 * 359.97438 * 18 17 15 20 20 C 1.47524 * 120.00255 * 180.02562 * 18 17 15 21 21 C 1.36596 * 125.77475 * 179.71388 * 20 18 17 22 22 N 1.34808 * 106.83990 * 179.90032 * 21 20 18 23 23 C 1.46503 * 126.59571 * 180.11122 * 22 21 20 24 24 C 1.53001 * 109.47191 * 75.27080 * 23 22 21 25 25 C 1.52997 * 109.47163 * 195.27125 * 23 22 21 26 26 C 1.53003 * 109.46883 * 315.26991 * 23 22 21 27 27 N 1.40211 * 106.81506 * 0.35618 * 22 21 20 28 28 N 1.28766 * 108.36362 * 359.77490 * 27 22 21 29 29 H 1.09001 * 109.47544 * 182.45090 * 1 2 3 30 30 H 1.09005 * 109.46735 * 302.45232 * 1 2 3 31 31 H 1.09002 * 109.47189 * 62.44977 * 1 2 3 32 32 H 1.08997 * 110.36341 * 86.08302 * 4 2 1 33 33 H 1.08991 * 110.46576 * 323.80381 * 4 2 1 34 34 H 0.97005 * 119.99717 * 179.97438 * 9 8 6 35 35 H 1.09006 * 109.87698 * 118.13072 * 14 5 4 36 36 H 1.08994 * 109.88039 * 239.29140 * 14 5 4 37 37 H 0.96997 * 120.00874 * 88.69392 * 17 15 14 38 38 H 1.08002 * 126.57774 * 0.03910 * 21 20 18 39 39 H 1.08997 * 109.47046 * 60.00116 * 24 23 22 40 40 H 1.09003 * 109.47053 * 180.02562 * 24 23 22 41 41 H 1.09006 * 109.46804 * 299.99992 * 24 23 22 42 42 H 1.09002 * 109.47150 * 59.99947 * 25 23 22 43 43 H 1.09003 * 109.47113 * 179.97438 * 25 23 22 44 44 H 1.08994 * 109.47390 * 299.99468 * 25 23 22 45 45 H 1.08998 * 109.47064 * 59.99871 * 26 23 22 46 46 H 1.09003 * 109.47105 * 180.02562 * 26 23 22 47 47 H 1.09002 * 109.47294 * 299.99970 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0181 0.0000 4 6 2.0851 -0.8068 -1.2003 5 7 3.4270 -1.2433 -0.7733 6 6 4.4639 -1.5670 -1.6071 7 1 4.3332 -1.5121 -2.6778 8 6 5.6833 -1.9647 -1.0763 9 7 5.8427 -2.0311 0.2286 10 14 7.0975 -2.4070 -2.2137 11 1 7.0437 -3.8570 -2.5296 12 1 6.9865 -1.6223 -3.4696 13 1 8.3863 -2.0932 -1.5462 14 6 3.4656 -1.2795 0.6961 15 6 2.0861 -0.8080 1.2023 16 1 1.4467 -1.6632 1.4211 17 7 2.2287 0.0496 2.3814 18 6 2.2004 -0.4914 3.6155 19 8 2.0562 -1.6913 3.7502 20 6 2.3434 0.3721 4.8030 21 6 2.3265 -0.0481 6.1027 22 7 2.4895 1.0484 6.8698 23 6 2.5391 1.0909 8.3333 24 6 3.8936 0.5656 8.8132 25 6 2.3543 2.5335 8.8082 26 6 1.4212 0.2179 8.9070 27 7 2.5968 2.1411 5.9978 28 7 2.5065 1.7061 4.7892 29 1 -0.3634 -1.0267 0.0439 30 1 -0.3633 0.5515 0.8672 31 1 -0.3634 0.4753 -0.9111 32 1 2.1559 -0.1722 -2.0836 33 1 1.4524 -1.6705 -1.4042 34 1 6.6947 -2.3094 0.5996 35 1 3.6600 -2.2965 1.0368 36 1 4.2423 -0.6086 1.0631 37 1 2.3433 1.0068 2.2741 38 1 2.2078 -1.0642 6.4490 39 1 4.6900 1.1875 8.4045 40 1 3.9304 0.5968 9.9022 41 1 4.0253 -0.4623 8.4749 42 1 1.3893 2.9077 8.4664 43 1 2.3908 2.5650 9.8972 44 1 3.1507 3.1554 8.3996 45 1 1.5529 -0.8098 8.5687 46 1 1.4578 0.2499 9.9960 47 1 0.4562 0.5921 8.5652 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001079819625.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:42 Heat of formation + Delta-G solvation = 79.871568 kcal Electronic energy + Delta-G solvation = -27472.284826 eV Core-core repulsion = 23692.958048 eV Total energy + Delta-G solvation = -3779.326778 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.28144 -39.27354 -37.72075 -37.26601 -33.84008 -32.61716 -32.03667 -30.80980 -30.29581 -28.09820 -27.98210 -27.58706 -25.57353 -24.19680 -23.68697 -22.75728 -20.83833 -20.27424 -19.89333 -19.31840 -17.58759 -16.82224 -16.29618 -16.14287 -15.83886 -14.94512 -14.78673 -14.66153 -14.56363 -14.09883 -13.88929 -13.62178 -13.16006 -13.04055 -12.93151 -12.77688 -12.69192 -12.62317 -12.36595 -12.24928 -11.92340 -11.84399 -11.63817 -11.55499 -11.26755 -11.19559 -10.95091 -10.72543 -10.56132 -10.40519 -10.33791 -9.91751 -9.87679 -9.70131 -9.60139 -9.25759 -8.55749 -8.36356 -6.76355 -5.62549 -2.97536 1.14232 1.85581 1.86351 3.45202 3.48166 3.50521 3.52138 3.63894 3.90316 4.14139 4.23303 4.26643 4.55942 4.74141 4.85603 4.92109 5.01656 5.10472 5.11315 5.13814 5.20001 5.24539 5.30705 5.40107 5.47124 5.53211 5.61812 5.62256 5.69745 5.83896 5.89431 6.08040 6.09670 6.24333 6.27799 6.34544 6.42493 6.57435 6.70514 6.85124 7.02602 7.62256 7.65556 7.87479 7.92215 8.09511 8.32664 8.60531 9.28309 9.89212 10.54524 11.48044 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.016180 B = 0.002993 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.167834 B = 9353.573386 C =10434.014002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.114 4.114 3 H 0.078 0.922 4 C 0.141 3.859 5 N -0.606 5.606 6 C -0.229 4.229 7 H 0.079 0.921 8 C -0.009 4.009 9 N -0.918 5.918 10 Si 0.912 3.088 11 H -0.289 1.289 12 H -0.282 1.282 13 H -0.291 1.291 14 C 0.173 3.827 15 C 0.120 3.880 16 H 0.090 0.910 17 N -0.694 5.694 18 C 0.602 3.398 19 O -0.540 6.540 20 C -0.092 4.092 21 C 0.090 3.910 22 N -0.354 5.354 23 C 0.170 3.830 24 C -0.162 4.162 25 C -0.148 4.148 26 C -0.163 4.163 27 N -0.068 5.068 28 N -0.206 5.206 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.042 0.958 33 H 0.022 0.978 34 H 0.252 0.748 35 H 0.048 0.952 36 H 0.052 0.948 37 H 0.404 0.596 38 H 0.200 0.800 39 H 0.070 0.930 40 H 0.084 0.916 41 H 0.069 0.931 42 H 0.068 0.932 43 H 0.079 0.921 44 H 0.075 0.925 45 H 0.071 0.929 46 H 0.086 0.914 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.538 7.512 19.468 23.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.134 4.134 3 H 0.097 0.903 4 C 0.015 3.985 5 N -0.333 5.333 6 C -0.357 4.357 7 H 0.097 0.903 8 C -0.205 4.205 9 N -0.566 5.566 10 Si 0.742 3.258 11 H -0.216 1.216 12 H -0.207 1.207 13 H -0.218 1.218 14 C 0.047 3.953 15 C 0.015 3.985 16 H 0.108 0.892 17 N -0.343 5.343 18 C 0.385 3.615 19 O -0.417 6.417 20 C -0.232 4.232 21 C -0.067 4.067 22 N -0.140 5.140 23 C 0.087 3.913 24 C -0.220 4.220 25 C -0.206 4.206 26 C -0.221 4.221 27 N -0.047 5.047 28 N -0.080 5.080 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.060 0.940 33 H 0.040 0.960 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.239 0.761 38 H 0.217 0.783 39 H 0.089 0.911 40 H 0.103 0.897 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.098 0.902 44 H 0.094 0.906 45 H 0.090 0.910 46 H 0.105 0.895 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.220 8.102 19.492 23.453 hybrid contribution 0.872 -0.897 -0.347 1.299 sum -9.348 7.204 19.145 22.490 Atomic orbital electron populations 1.21692 0.95052 1.01676 1.01022 1.22620 0.94842 0.99657 0.96269 0.90319 1.21581 0.87595 0.95025 0.94346 1.44412 1.07893 1.79168 1.01804 1.19044 0.89302 1.38429 0.88916 0.90340 1.24829 0.97861 1.01833 0.95994 1.69984 1.24121 1.53307 1.09170 0.86121 0.81983 0.78179 0.79482 1.21641 1.20726 1.21764 1.21490 0.90138 1.00323 0.83350 1.22551 1.00446 0.92734 0.82740 0.89152 1.45702 1.72078 1.11564 1.04967 1.16718 0.76821 0.86177 0.81779 1.90804 1.50844 1.13923 1.86090 1.21606 1.16084 0.90937 0.94524 1.23225 0.98088 0.94664 0.90678 1.50775 1.48839 1.06154 1.08259 1.21060 0.97802 0.99277 0.73118 1.22297 0.94781 1.02366 1.02589 1.21985 1.04093 0.92739 1.01749 1.22299 0.97512 0.99857 1.02430 1.81918 1.22588 1.07888 0.92339 1.74643 1.09922 1.09580 1.13824 0.92647 0.93110 0.92758 0.93978 0.96029 0.93808 0.93415 0.93016 0.76121 0.78314 0.91139 0.89735 0.91233 0.91273 0.90245 0.90599 0.91040 0.89487 0.91172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.30 37.16 0.35 -1.59 16 2 C -0.11 -2.01 3.27 -88.47 -0.29 -2.30 16 3 H 0.08 1.36 8.01 -51.93 -0.42 0.94 16 4 C 0.14 2.95 6.70 -2.53 -0.02 2.94 16 5 N -0.61 -15.94 3.39 -170.06 -0.58 -16.52 16 6 C -0.23 -6.53 10.28 -15.06 -0.15 -6.69 16 7 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 8 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 9 N -0.92 -28.05 10.31 55.49 0.57 -27.47 16 10 Si 0.91 22.71 29.55 -169.99 -5.02 17.68 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 14 C 0.17 4.42 5.13 -3.06 -0.02 4.41 16 15 C 0.12 2.41 2.78 -66.09 -0.18 2.22 16 16 H 0.09 1.88 7.42 -51.93 -0.39 1.49 16 17 N -0.69 -12.55 5.10 -53.06 -0.27 -12.82 16 18 C 0.60 11.04 7.82 -12.47 -0.10 10.94 16 19 O -0.54 -11.31 16.51 5.28 0.09 -11.22 16 20 C -0.09 -1.43 6.99 -83.55 -0.58 -2.02 16 21 C 0.09 1.10 10.43 -16.84 -0.18 0.92 16 22 N -0.35 -3.85 3.44 -48.35 -0.17 -4.02 16 23 C 0.17 1.17 1.25 -131.82 -0.16 1.01 16 24 C -0.16 -0.96 8.74 37.16 0.32 -0.64 16 25 C -0.15 -0.90 8.11 37.16 0.30 -0.59 16 26 C -0.16 -0.79 8.30 37.16 0.31 -0.48 16 27 N -0.07 -0.94 12.91 60.35 0.78 -0.16 16 28 N -0.21 -3.24 12.04 32.85 0.40 -2.84 16 29 H 0.05 0.78 8.11 -51.93 -0.42 0.36 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.02 0.45 8.04 -51.93 -0.42 0.03 16 34 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 35 H 0.05 1.40 7.52 -51.93 -0.39 1.01 16 36 H 0.05 1.47 7.25 -51.93 -0.38 1.09 16 37 H 0.40 6.69 8.25 -40.82 -0.34 6.35 16 38 H 0.20 1.91 7.62 -52.49 -0.40 1.51 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 44 H 0.07 0.55 8.06 -51.93 -0.42 0.13 16 45 H 0.07 0.33 7.43 -51.93 -0.39 -0.05 16 46 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 47 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 LS Contribution 384.44 15.07 5.79 5.79 Total: -1.00 -34.91 384.44 -6.63 -41.54 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -7.72 Total: 2.26 kcal Atomic # 6 Polarization: 8.28 SS G_CDS: -0.50 Total: 7.79 kcal Atomic # 7 Polarization: -64.57 SS G_CDS: 0.73 Total: -63.84 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: 0.09 Total: -11.22 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.68 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.91 -6.63 -41.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079819625.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.411 kcal (2) G-P(sol) polarization free energy of solvation -34.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds