Wall clock time and date at job start Fri Apr 10 2020 18:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 110.91782 * 2 1 4 4 C 1.54912 * 110.99964 * 236.09241 * 2 1 3 5 5 N 1.47428 * 104.83095 * 204.91758 * 4 2 1 6 6 C 1.36931 * 125.65100 * 204.09420 * 5 4 2 7 7 H 1.08002 * 120.00103 * 0.02562 * 6 5 4 8 8 C 1.38812 * 120.00429 * 179.97438 * 6 5 4 9 9 N 1.31624 * 119.99535 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 120.00484 * 179.97438 * 8 6 5 11 11 H 1.48493 * 109.47326 * 270.00576 * 10 8 6 12 12 H 1.48506 * 109.46545 * 30.00326 * 10 8 6 13 13 H 1.48498 * 109.47210 * 150.00037 * 10 8 6 14 14 C 1.47032 * 108.70123 * 24.35753 * 5 4 2 15 15 C 1.54327 * 107.26586 * 358.58848 * 14 5 4 16 16 H 1.09000 * 110.51881 * 96.45074 * 15 14 5 17 17 N 1.46500 * 110.84789 * 219.67541 * 15 14 5 18 18 C 1.34778 * 119.99572 * 268.69019 * 17 15 14 19 19 O 1.21599 * 120.00084 * 359.97438 * 18 17 15 20 20 C 1.47524 * 120.00255 * 180.02562 * 18 17 15 21 21 C 1.36596 * 125.77475 * 179.71388 * 20 18 17 22 22 N 1.34808 * 106.83990 * 179.90032 * 21 20 18 23 23 C 1.46503 * 126.59571 * 180.11122 * 22 21 20 24 24 C 1.53001 * 109.47191 * 75.27080 * 23 22 21 25 25 C 1.52997 * 109.47163 * 195.27125 * 23 22 21 26 26 C 1.53003 * 109.46883 * 315.26991 * 23 22 21 27 27 N 1.40211 * 106.81506 * 0.35618 * 22 21 20 28 28 N 1.28766 * 108.36362 * 359.77490 * 27 22 21 29 29 H 1.09001 * 109.47544 * 182.45090 * 1 2 3 30 30 H 1.09005 * 109.46735 * 302.45232 * 1 2 3 31 31 H 1.09002 * 109.47189 * 62.44977 * 1 2 3 32 32 H 1.08997 * 110.36341 * 86.08302 * 4 2 1 33 33 H 1.08991 * 110.46576 * 323.80381 * 4 2 1 34 34 H 0.97005 * 119.99717 * 179.97438 * 9 8 6 35 35 H 1.09006 * 109.87698 * 118.13072 * 14 5 4 36 36 H 1.08994 * 109.88039 * 239.29140 * 14 5 4 37 37 H 0.96997 * 120.00874 * 88.69392 * 17 15 14 38 38 H 1.08002 * 126.57774 * 0.03910 * 21 20 18 39 39 H 1.08997 * 109.47046 * 60.00116 * 24 23 22 40 40 H 1.09003 * 109.47053 * 180.02562 * 24 23 22 41 41 H 1.09006 * 109.46804 * 299.99992 * 24 23 22 42 42 H 1.09002 * 109.47150 * 59.99947 * 25 23 22 43 43 H 1.09003 * 109.47113 * 179.97438 * 25 23 22 44 44 H 1.08994 * 109.47390 * 299.99468 * 25 23 22 45 45 H 1.08998 * 109.47064 * 59.99871 * 26 23 22 46 46 H 1.09003 * 109.47105 * 180.02562 * 26 23 22 47 47 H 1.09002 * 109.47294 * 299.99970 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0181 0.0000 4 6 2.0851 -0.8068 -1.2003 5 7 3.4270 -1.2433 -0.7733 6 6 4.4639 -1.5670 -1.6071 7 1 4.3332 -1.5121 -2.6778 8 6 5.6833 -1.9647 -1.0763 9 7 5.8427 -2.0311 0.2286 10 14 7.0975 -2.4070 -2.2137 11 1 7.0437 -3.8570 -2.5296 12 1 6.9865 -1.6223 -3.4696 13 1 8.3863 -2.0932 -1.5462 14 6 3.4656 -1.2795 0.6961 15 6 2.0861 -0.8080 1.2023 16 1 1.4467 -1.6632 1.4211 17 7 2.2287 0.0496 2.3814 18 6 2.2004 -0.4914 3.6155 19 8 2.0562 -1.6913 3.7502 20 6 2.3434 0.3721 4.8030 21 6 2.3265 -0.0481 6.1027 22 7 2.4895 1.0484 6.8698 23 6 2.5391 1.0909 8.3333 24 6 3.8936 0.5656 8.8132 25 6 2.3543 2.5335 8.8082 26 6 1.4212 0.2179 8.9070 27 7 2.5968 2.1411 5.9978 28 7 2.5065 1.7061 4.7892 29 1 -0.3634 -1.0267 0.0439 30 1 -0.3633 0.5515 0.8672 31 1 -0.3634 0.4753 -0.9111 32 1 2.1559 -0.1722 -2.0836 33 1 1.4524 -1.6705 -1.4042 34 1 6.6947 -2.3094 0.5996 35 1 3.6600 -2.2965 1.0368 36 1 4.2423 -0.6086 1.0631 37 1 2.3433 1.0068 2.2741 38 1 2.2078 -1.0642 6.4490 39 1 4.6900 1.1875 8.4045 40 1 3.9304 0.5968 9.9022 41 1 4.0253 -0.4623 8.4749 42 1 1.3893 2.9077 8.4664 43 1 2.3908 2.5650 9.8972 44 1 3.1507 3.1554 8.3996 45 1 1.5529 -0.8098 8.5687 46 1 1.4578 0.2499 9.9960 47 1 0.4562 0.5921 8.5652 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001079819625.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:42 Heat of formation + Delta-G solvation = 54.931219 kcal Electronic energy + Delta-G solvation = -27473.366321 eV Core-core repulsion = 23692.958048 eV Total energy + Delta-G solvation = -3780.408273 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.32328 -40.80656 -39.08232 -38.27789 -35.63667 -34.31005 -33.00861 -32.19595 -31.90933 -29.51843 -28.43148 -28.42381 -27.37057 -25.70584 -24.72407 -24.21794 -22.20099 -21.65276 -21.50177 -20.59841 -18.88490 -18.57093 -17.45845 -17.33675 -17.12066 -16.83681 -15.88343 -15.75942 -15.65327 -15.49809 -15.09344 -14.85114 -14.73193 -14.43047 -14.07599 -13.69725 -13.65311 -13.38867 -13.33141 -13.32902 -13.18114 -13.03822 -12.85281 -12.77986 -12.59761 -12.45573 -12.35619 -12.18645 -12.07402 -11.95939 -11.84987 -11.66019 -11.46017 -11.27828 -11.19382 -10.74139 -10.41341 -9.96727 -8.91604 -7.83442 -5.21430 0.13865 0.61268 1.02786 1.44577 1.47735 1.56263 2.08138 2.26668 2.50244 3.14627 3.24300 3.34720 3.58213 3.64765 3.73168 3.76952 3.80366 3.93670 4.06268 4.11496 4.17798 4.45314 4.54953 4.57571 4.59886 4.63060 4.67790 4.72853 4.76275 4.79454 4.81413 4.89505 5.07106 5.07323 5.08753 5.18965 5.19961 5.27441 5.29650 5.45464 5.50716 5.54264 5.61333 5.78207 6.17381 6.45350 6.90626 7.06718 7.16437 7.76398 8.40724 9.25846 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.016180 B = 0.002993 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.167834 B = 9353.573386 C =10434.014002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.096 4.096 3 H 0.086 0.914 4 C 0.134 3.866 5 N -0.628 5.628 6 C -0.240 4.240 7 H 0.089 0.911 8 C -0.072 4.072 9 N -0.953 5.953 10 Si 0.982 3.018 11 H -0.286 1.286 12 H -0.264 1.264 13 H -0.297 1.297 14 C 0.188 3.812 15 C 0.136 3.864 16 H 0.084 0.916 17 N -0.690 5.690 18 C 0.601 3.399 19 O -0.572 6.572 20 C -0.120 4.120 21 C 0.106 3.894 22 N -0.337 5.337 23 C 0.157 3.843 24 C -0.160 4.160 25 C -0.146 4.146 26 C -0.160 4.160 27 N -0.080 5.080 28 N -0.226 5.226 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.055 0.945 33 H 0.030 0.970 34 H 0.244 0.756 35 H -0.004 1.004 36 H 0.014 0.986 37 H 0.412 0.588 38 H 0.226 0.774 39 H 0.052 0.948 40 H 0.116 0.884 41 H 0.067 0.933 42 H 0.060 0.940 43 H 0.112 0.888 44 H 0.059 0.941 45 H 0.074 0.926 46 H 0.116 0.884 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.922 8.295 20.536 25.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.116 4.116 3 H 0.104 0.896 4 C 0.009 3.991 5 N -0.355 5.355 6 C -0.369 4.369 7 H 0.107 0.893 8 C -0.265 4.265 9 N -0.602 5.602 10 Si 0.810 3.190 11 H -0.213 1.213 12 H -0.188 1.188 13 H -0.224 1.224 14 C 0.062 3.938 15 C 0.030 3.970 16 H 0.102 0.898 17 N -0.339 5.339 18 C 0.387 3.613 19 O -0.451 6.451 20 C -0.259 4.259 21 C -0.052 4.052 22 N -0.123 5.123 23 C 0.077 3.923 24 C -0.218 4.218 25 C -0.204 4.204 26 C -0.218 4.218 27 N -0.060 5.060 28 N -0.100 5.100 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.073 0.927 33 H 0.048 0.952 34 H 0.053 0.947 35 H 0.014 0.986 36 H 0.032 0.968 37 H 0.248 0.752 38 H 0.243 0.757 39 H 0.071 0.929 40 H 0.135 0.865 41 H 0.086 0.914 42 H 0.079 0.921 43 H 0.130 0.870 44 H 0.078 0.922 45 H 0.093 0.907 46 H 0.135 0.865 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -11.642 8.940 20.559 25.262 hybrid contribution 1.297 -1.139 -0.569 1.817 sum -10.345 7.802 19.990 23.823 Atomic orbital electron populations 1.21640 0.91567 1.02354 1.02960 1.22552 0.97456 0.98783 0.92811 0.89599 1.21848 0.85241 0.95865 0.96176 1.44734 1.09593 1.79196 1.01938 1.19523 0.90105 1.37468 0.89838 0.89283 1.25757 1.00739 1.02489 0.97479 1.70253 1.24126 1.54689 1.11144 0.85021 0.78099 0.77905 0.77971 1.21335 1.18849 1.22351 1.21112 0.92490 0.96623 0.83600 1.22170 0.96854 0.93564 0.84390 0.89782 1.45594 1.72091 1.11679 1.04567 1.17078 0.75699 0.86107 0.82434 1.90774 1.52331 1.15357 1.86635 1.21341 1.18969 0.91016 0.94606 1.23568 0.96054 0.95906 0.89666 1.51178 1.46629 1.04933 1.09608 1.21632 0.99454 1.00613 0.70594 1.22333 0.93315 1.01645 1.04541 1.22019 1.02936 0.91689 1.03728 1.22344 0.95989 0.99311 1.04142 1.81829 1.22838 1.09035 0.92269 1.74610 1.10758 1.09686 1.14921 0.92597 0.91688 0.90339 0.92654 0.95169 0.94720 0.98618 0.96771 0.75170 0.75716 0.92899 0.86533 0.91444 0.92109 0.86992 0.92200 0.90670 0.86524 0.91808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.25 9.30 71.98 0.67 -2.58 16 2 C -0.10 -3.28 3.27 -9.40 -0.03 -3.31 16 3 H 0.09 2.83 8.01 -2.39 -0.02 2.81 16 4 C 0.13 5.50 6.70 86.86 0.58 6.08 16 5 N -0.63 -33.83 3.39 -691.96 -2.35 -36.17 16 6 C -0.24 -13.97 10.28 84.03 0.86 -13.11 16 7 H 0.09 4.85 7.83 -2.91 -0.02 4.83 16 8 C -0.07 -4.30 5.49 84.86 0.47 -3.83 16 9 N -0.95 -61.04 10.31 21.65 0.22 -60.82 16 10 Si 0.98 47.64 29.55 68.60 2.03 49.67 16 11 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 12 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 13 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 14 C 0.19 10.17 5.13 86.73 0.45 10.61 16 15 C 0.14 5.58 2.78 46.18 0.13 5.70 16 16 H 0.08 3.58 7.42 -2.39 -0.02 3.56 16 17 N -0.69 -25.60 5.10 -440.05 -2.25 -27.85 16 18 C 0.60 22.72 7.82 86.69 0.68 23.40 16 19 O -0.57 -24.77 16.51 -4.03 -0.07 -24.83 16 20 C -0.12 -3.77 6.99 40.82 0.29 -3.49 16 21 C 0.11 2.52 10.43 83.85 0.87 3.40 16 22 N -0.34 -7.01 3.44 -306.89 -1.06 -8.07 16 23 C 0.16 1.84 1.25 3.60 0.00 1.84 16 24 C -0.16 -1.54 8.74 71.98 0.63 -0.91 16 25 C -0.15 -1.48 8.11 71.98 0.58 -0.89 16 26 C -0.16 -1.07 8.30 71.98 0.60 -0.47 16 27 N -0.08 -2.22 12.91 37.02 0.48 -1.74 16 28 N -0.23 -7.20 12.04 -49.99 -0.60 -7.80 16 29 H 0.05 1.44 8.11 -2.39 -0.02 1.42 16 30 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 31 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.03 1.21 8.04 -2.39 -0.02 1.19 16 34 H 0.24 15.25 8.31 -92.70 -0.77 14.48 16 35 H 0.00 -0.28 7.52 -2.38 -0.02 -0.30 16 36 H 0.01 0.85 7.25 -2.39 -0.02 0.84 16 37 H 0.41 13.89 8.25 -92.71 -0.76 13.13 16 38 H 0.23 3.98 7.62 -2.91 -0.02 3.96 16 39 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.12 0.39 8.14 -2.39 -0.02 0.37 16 41 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 42 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 44 H 0.06 0.81 8.06 -2.39 -0.02 0.79 16 45 H 0.07 0.48 7.43 -2.39 -0.02 0.46 16 46 H 0.12 0.14 8.14 -2.39 -0.02 0.12 16 47 H 0.06 0.54 8.14 -2.39 -0.02 0.53 16 Total: -1.00 -80.67 384.44 3.38 -77.28 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: 0.20 Total: 17.90 kcal Atomic # 6 Polarization: 15.66 SS G_CDS: 6.78 Total: 22.43 kcal Atomic # 7 Polarization: -136.90 SS G_CDS: -5.55 Total: -142.45 kcal Atomic # 8 Polarization: -24.77 SS G_CDS: -0.07 Total: -24.83 kcal Atomic # 14 Polarization: 47.64 SS G_CDS: 2.03 Total: 49.67 kcal Total: -80.67 3.38 -77.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079819625.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.213 kcal (2) G-P(sol) polarization free energy of solvation -80.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds