Wall clock time and date at job start Fri Apr 10 2020 18:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 110.64326 * 2 1 4 4 C 1.54322 * 110.71583 * 236.66327 * 2 1 3 5 5 N 1.47026 * 107.26978 * 219.44833 * 4 2 1 6 6 C 1.36934 * 125.64528 * 178.92538 * 5 4 2 7 7 H 1.07996 * 120.00511 * 341.51708 * 6 5 4 8 8 C 1.38820 * 119.99813 * 161.52145 * 6 5 4 9 9 N 1.31621 * 119.99956 * 157.62320 * 8 6 5 10 10 Si 1.86796 * 119.99954 * 337.62231 * 8 6 5 11 11 H 1.48501 * 109.47129 * 84.53241 * 10 8 6 12 12 H 1.48495 * 109.47185 * 204.53562 * 10 8 6 13 13 H 1.48505 * 109.47074 * 324.53440 * 10 8 6 14 14 C 1.47419 * 108.70261 * 358.94039 * 5 4 2 15 15 C 1.54912 * 104.83390 * 24.13138 * 14 5 4 16 16 H 1.08999 * 111.03667 * 81.07209 * 15 14 5 17 17 N 1.46496 * 111.00680 * 204.91496 * 15 14 5 18 18 C 1.34769 * 120.00211 * 267.19761 * 17 15 14 19 19 O 1.21562 * 120.00016 * 359.71901 * 18 17 15 20 20 C 1.47869 * 120.00478 * 179.97438 * 18 17 15 21 21 N 1.34551 * 126.04730 * 359.69025 * 20 18 17 22 22 C 1.30862 * 107.27185 * 179.86790 * 21 20 18 23 23 N 1.34583 * 107.62517 * 0.38973 * 22 21 20 24 24 C 1.46508 * 125.75089 * 179.77417 * 23 22 21 25 25 C 1.52991 * 109.47159 * 74.99576 * 24 23 22 26 26 C 1.52996 * 109.47046 * 195.00212 * 24 23 22 27 27 C 1.52997 * 109.46710 * 314.99672 * 24 23 22 28 28 N 1.28847 * 108.50452 * 359.75160 * 23 22 21 29 29 H 1.08998 * 109.47170 * 296.86230 * 1 2 3 30 30 H 1.09007 * 109.46622 * 56.85108 * 1 2 3 31 31 H 1.08995 * 109.47433 * 176.85306 * 1 2 3 32 32 H 1.09002 * 109.88465 * 338.86674 * 4 2 1 33 33 H 1.09004 * 109.88569 * 99.87765 * 4 2 1 34 34 H 0.97000 * 119.99396 * 180.02562 * 9 8 6 35 35 H 1.09001 * 110.36787 * 265.29433 * 14 5 4 36 36 H 1.08997 * 110.36948 * 142.96881 * 14 5 4 37 37 H 0.97002 * 119.99752 * 87.19302 * 17 15 14 38 38 H 1.08001 * 126.19447 * 180.13810 * 22 21 20 39 39 H 1.09007 * 109.47562 * 60.00101 * 25 24 23 40 40 H 1.09000 * 109.47695 * 180.02562 * 25 24 23 41 41 H 1.09000 * 109.47408 * 300.00525 * 25 24 23 42 42 H 1.09000 * 109.47639 * 59.99668 * 26 24 23 43 43 H 1.09006 * 109.47073 * 180.02562 * 26 24 23 44 44 H 1.09004 * 109.47008 * 299.99163 * 26 24 23 45 45 H 1.09006 * 109.47235 * 60.00288 * 27 24 23 46 46 H 1.09004 * 109.47276 * 179.97438 * 27 24 23 47 47 H 1.08998 * 109.47762 * 299.99918 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0760 -0.7933 -1.2059 5 7 3.2444 -1.5521 -0.7364 6 6 4.0034 -2.4004 -1.4975 7 1 3.6111 -2.7914 -2.4246 8 6 5.2773 -2.7579 -1.0774 9 7 5.8318 -3.8643 -1.5255 10 14 6.2045 -1.6688 0.1240 11 1 5.7966 -2.0036 1.5121 12 1 7.6644 -1.8923 -0.0304 13 1 5.8896 -0.2445 -0.1545 14 6 3.4632 -1.2488 0.6896 15 6 2.0789 -0.7935 1.2151 16 1 1.4447 -1.6508 1.4406 17 7 2.2214 0.0735 2.3874 18 6 2.1873 -0.4568 3.6259 19 8 2.0331 -1.6539 3.7705 20 6 2.3317 0.4182 4.8091 21 7 2.5080 1.7520 4.7908 22 6 2.5878 2.1505 6.0347 23 7 2.4696 1.0634 6.8192 24 6 2.5083 1.0565 8.2838 25 6 1.1879 1.6016 8.8315 26 6 2.7147 -0.3754 8.7817 27 6 3.6630 1.9360 8.7675 28 7 2.3162 0.0298 6.0654 29 1 -0.3633 0.4643 0.9168 30 1 -0.3633 0.5620 -0.8605 31 1 -0.3634 -1.0260 -0.0564 32 1 1.3128 -1.4784 -1.5751 33 1 2.3716 -0.1060 -1.9987 34 1 6.7218 -4.1143 -1.2316 35 1 4.1931 -0.4467 0.7992 36 1 3.7959 -2.1407 1.2205 37 1 2.3404 1.0293 2.2721 38 1 2.7277 3.1673 6.3709 39 1 0.3652 0.9751 8.4868 40 1 1.2168 1.5969 9.9211 41 1 1.0409 2.6217 8.4767 42 1 3.6555 -0.7638 8.3915 43 1 2.7431 -0.3807 9.8714 44 1 1.8920 -1.0020 8.4371 45 1 3.5161 2.9562 8.4128 46 1 3.6917 1.9312 9.8572 47 1 4.6038 1.5476 8.3774 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080440035.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:45 Heat of formation + Delta-G solvation = 54.363403 kcal Electronic energy + Delta-G solvation = -27655.516019 eV Core-core repulsion = 23875.083124 eV Total energy + Delta-G solvation = -3780.432895 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.58673 -41.10812 -39.39174 -38.23118 -35.84213 -34.52451 -33.59893 -32.84941 -32.11090 -29.86332 -28.49476 -28.41101 -27.80840 -26.23871 -24.61034 -24.04210 -22.76000 -21.85640 -21.16482 -21.12236 -19.00601 -18.93423 -17.80942 -17.66894 -17.57034 -17.04352 -16.36662 -15.92147 -15.79356 -15.40181 -15.19116 -15.07741 -14.95134 -14.69667 -14.41997 -14.03412 -13.82627 -13.64853 -13.31765 -13.26871 -13.25944 -13.14865 -13.05296 -12.84266 -12.78679 -12.41860 -12.31810 -12.20797 -12.02297 -11.92243 -11.65666 -11.56597 -11.49985 -11.47467 -11.45613 -10.90298 -10.65371 -10.20680 -9.11641 -8.24492 -5.49995 0.25061 1.05389 1.10608 1.25029 1.27286 1.36656 1.87358 2.17213 2.35112 2.91131 3.04890 3.21826 3.34564 3.48605 3.64280 3.74086 3.76661 3.77302 3.86006 3.95423 4.21362 4.42956 4.52015 4.53608 4.56931 4.57891 4.67157 4.70207 4.75893 4.78436 4.79505 4.88029 4.91004 4.99312 5.07854 5.08786 5.13851 5.18898 5.20794 5.29805 5.33372 5.47597 5.62689 5.66495 6.05262 6.26783 6.68675 6.88713 7.04844 7.47527 8.03872 8.95284 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.016761 B = 0.003283 C = 0.002953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.175800 B = 8526.366554 C = 9479.802342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.092 4.092 3 H 0.106 0.894 4 C 0.134 3.866 5 N -0.625 5.625 6 C -0.231 4.231 7 H 0.071 0.929 8 C -0.033 4.033 9 N -0.952 5.952 10 Si 0.937 3.063 11 H -0.294 1.294 12 H -0.301 1.301 13 H -0.261 1.261 14 C 0.103 3.897 15 C 0.147 3.853 16 H 0.090 0.910 17 N -0.682 5.682 18 C 0.610 3.390 19 O -0.563 6.563 20 C 0.114 3.886 21 N -0.500 5.500 22 C 0.204 3.796 23 N -0.287 5.287 24 C 0.156 3.844 25 C -0.154 4.154 26 C -0.151 4.151 27 C -0.156 4.156 28 N -0.273 5.273 29 H 0.067 0.933 30 H 0.083 0.917 31 H 0.050 0.950 32 H 0.043 0.957 33 H 0.047 0.953 34 H 0.263 0.737 35 H 0.028 0.972 36 H 0.022 0.978 37 H 0.422 0.578 38 H 0.275 0.725 39 H 0.046 0.954 40 H 0.113 0.887 41 H 0.085 0.915 42 H 0.046 0.954 43 H 0.111 0.889 44 H 0.050 0.950 45 H 0.094 0.906 46 H 0.115 0.885 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.065 21.863 25.536 35.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.111 4.111 3 H 0.124 0.876 4 C 0.009 3.991 5 N -0.352 5.352 6 C -0.359 4.359 7 H 0.089 0.911 8 C -0.228 4.228 9 N -0.598 5.598 10 Si 0.767 3.233 11 H -0.221 1.221 12 H -0.229 1.229 13 H -0.186 1.186 14 C -0.023 4.023 15 C 0.041 3.959 16 H 0.108 0.892 17 N -0.334 5.334 18 C 0.393 3.607 19 O -0.439 6.439 20 C -0.165 4.165 21 N -0.226 5.226 22 C -0.090 4.090 23 N -0.084 5.084 24 C 0.076 3.924 25 C -0.212 4.212 26 C -0.208 4.208 27 C -0.214 4.214 28 N -0.114 5.114 29 H 0.086 0.914 30 H 0.102 0.898 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.045 0.955 36 H 0.040 0.960 37 H 0.260 0.740 38 H 0.291 0.709 39 H 0.065 0.935 40 H 0.132 0.868 41 H 0.104 0.896 42 H 0.065 0.935 43 H 0.130 0.870 44 H 0.070 0.930 45 H 0.112 0.888 46 H 0.133 0.867 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.078 20.394 25.445 34.440 hybrid contribution 1.215 0.051 0.223 1.237 sum -9.863 20.445 25.668 34.265 Atomic orbital electron populations 1.21709 0.91438 1.02424 1.03255 1.22443 0.98037 0.99348 0.91254 0.87600 1.21694 0.88191 0.93395 0.95783 1.44754 1.33441 1.51691 1.05278 1.18650 0.95000 1.17825 1.04474 0.91140 1.25560 0.98049 0.98425 1.00783 1.69951 1.17148 1.23095 1.49649 0.86083 0.77276 0.81066 0.78880 1.22123 1.22878 1.18576 1.22241 0.96899 0.97350 0.85851 1.22107 0.95459 0.93911 0.84422 0.89225 1.45409 1.72168 1.12259 1.03534 1.16695 0.76303 0.85526 0.82160 1.90817 1.50607 1.16114 1.86322 1.23292 1.10765 0.90659 0.91736 1.71202 1.20554 1.08332 1.22523 1.27268 0.99608 0.97637 0.84530 1.48233 1.46626 1.03629 1.09873 1.21688 1.00494 0.99762 0.70441 1.22278 0.92821 1.02077 1.04025 1.22033 1.02093 0.93236 1.03484 1.22316 0.94694 0.99696 1.04701 1.74235 1.18437 1.15984 1.02696 0.91418 0.89838 0.93038 0.93913 0.93515 0.92845 0.95473 0.95956 0.74015 0.70937 0.93471 0.86798 0.89609 0.93464 0.87041 0.93033 0.88754 0.86689 0.92785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.01 9.16 71.98 0.66 -2.35 16 2 C -0.09 -2.73 3.20 -9.60 -0.03 -2.77 16 3 H 0.11 2.68 8.00 -2.39 -0.02 2.66 16 4 C 0.13 5.16 6.84 86.73 0.59 5.75 16 5 N -0.62 -31.86 3.21 -691.98 -2.22 -34.08 16 6 C -0.23 -13.98 10.57 84.04 0.89 -13.10 16 7 H 0.07 4.50 8.06 -2.91 -0.02 4.48 16 8 C -0.03 -2.10 5.43 84.86 0.46 -1.64 16 9 N -0.95 -63.22 13.97 21.65 0.30 -62.91 16 10 Si 0.94 51.14 24.27 68.60 1.66 52.81 16 11 H -0.29 -16.33 6.49 99.48 0.65 -15.68 16 12 H -0.30 -16.17 7.11 99.48 0.71 -15.47 16 13 H -0.26 -13.39 6.66 99.48 0.66 -12.73 16 14 C 0.10 4.96 4.38 86.86 0.38 5.34 16 15 C 0.15 5.52 2.87 46.39 0.13 5.65 16 16 H 0.09 3.69 7.44 -2.39 -0.02 3.67 16 17 N -0.68 -22.66 5.19 -438.80 -2.28 -24.94 16 18 C 0.61 23.16 7.83 86.79 0.68 23.84 16 19 O -0.56 -26.18 16.72 -3.91 -0.07 -26.24 16 20 C 0.11 3.66 7.96 137.13 1.09 4.75 16 21 N -0.50 -12.35 11.09 -193.04 -2.14 -14.49 16 22 C 0.20 3.18 11.71 180.30 2.11 5.29 16 23 N -0.29 -5.34 3.17 -311.60 -0.99 -6.32 16 24 C 0.16 1.53 1.23 3.60 0.00 1.54 16 25 C -0.15 -0.78 8.72 71.98 0.63 -0.15 16 26 C -0.15 -1.98 8.04 71.98 0.58 -1.40 16 27 C -0.16 -0.52 8.28 71.98 0.60 0.08 16 28 N -0.27 -8.14 11.09 -52.44 -0.58 -8.72 16 29 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.08 1.54 8.14 -2.38 -0.02 1.53 16 31 H 0.05 1.29 8.06 -2.39 -0.02 1.27 16 32 H 0.04 1.62 7.76 -2.39 -0.02 1.60 16 33 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.26 16.59 8.31 -92.71 -0.77 15.82 16 35 H 0.03 1.33 5.58 -2.39 -0.01 1.32 16 36 H 0.02 1.24 6.63 -2.39 -0.02 1.23 16 37 H 0.42 11.52 8.28 -92.71 -0.77 10.75 16 38 H 0.28 0.79 7.53 -2.91 -0.02 0.77 16 39 H 0.05 0.48 8.14 -2.38 -0.02 0.46 16 40 H 0.11 -0.02 8.14 -2.39 -0.02 -0.04 16 41 H 0.09 0.17 8.14 -2.39 -0.02 0.15 16 42 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.11 0.66 8.14 -2.38 -0.02 0.64 16 44 H 0.05 0.94 8.02 -2.38 -0.02 0.92 16 45 H 0.09 -0.10 7.34 -2.38 -0.02 -0.12 16 46 H 0.11 -0.16 8.14 -2.39 -0.02 -0.18 16 47 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 Total: -1.00 -89.31 377.63 2.57 -86.74 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: 0.10 Total: 7.33 kcal Atomic # 6 Polarization: 22.06 SS G_CDS: 8.78 Total: 30.83 kcal Atomic # 7 Polarization: -143.56 SS G_CDS: -7.90 Total: -151.47 kcal Atomic # 8 Polarization: -26.18 SS G_CDS: -0.07 Total: -26.24 kcal Atomic # 14 Polarization: 51.14 SS G_CDS: 1.66 Total: 52.81 kcal Total: -89.31 2.57 -86.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080440035.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.107 kcal (2) G-P(sol) polarization free energy of solvation -89.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds