Wall clock time and date at job start Fri Apr 10 2020 18:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46505 * 120.00048 * 2 1 4 4 C 1.52996 * 109.47135 * 263.66916 * 3 2 1 5 5 H 1.09000 * 112.96751 * 310.04279 * 4 3 2 6 6 C 1.53948 * 113.76759 * 178.36139 * 4 3 2 7 7 C 1.53943 * 86.28975 * 222.09625 * 6 4 3 8 8 N 1.47573 * 86.12083 * 23.60728 * 7 6 4 9 9 C 1.36938 * 134.49801 * 155.35882 * 8 7 6 10 10 H 1.08002 * 120.00205 * 151.21261 * 9 8 7 11 11 C 1.38815 * 119.99452 * 331.20983 * 9 8 7 12 12 N 1.31628 * 119.99771 * 169.65603 * 11 9 8 13 13 Si 1.86795 * 120.00490 * 349.65762 * 11 9 8 14 14 H 1.48504 * 109.47198 * 84.65088 * 13 11 9 15 15 H 1.48496 * 109.47415 * 204.65226 * 13 11 9 16 16 H 1.48506 * 109.46732 * 324.65421 * 13 11 9 17 17 C 1.34773 * 119.99819 * 180.02562 * 2 1 3 18 18 O 1.21560 * 120.00023 * 185.41937 * 17 2 1 19 19 C 1.47871 * 120.00513 * 5.42070 * 17 2 1 20 20 N 1.34550 * 126.04104 * 354.74053 * 19 17 2 21 21 C 1.30869 * 107.26509 * 179.78834 * 20 19 17 22 22 N 1.34588 * 107.62609 * 0.38611 * 21 20 19 23 23 C 1.46495 * 125.74736 * 179.86475 * 22 21 20 24 24 C 1.53003 * 109.47247 * 74.71812 * 23 22 21 25 25 C 1.52995 * 109.47632 * 314.71791 * 23 22 21 26 26 C 1.53001 * 109.46977 * 194.71788 * 23 22 21 27 27 N 1.28852 * 108.50038 * 359.60722 * 22 21 20 28 28 H 1.08999 * 109.47214 * 234.20312 * 1 2 3 29 29 H 1.09005 * 109.46807 * 354.20532 * 1 2 3 30 30 H 1.09001 * 109.47103 * 114.19969 * 1 2 3 31 31 H 1.09000 * 109.46824 * 23.67679 * 3 2 1 32 32 H 1.09003 * 109.46761 * 143.66775 * 3 2 1 33 33 H 1.09005 * 113.74293 * 336.44098 * 6 4 3 34 34 H 1.08997 * 113.74236 * 107.64192 * 6 4 3 35 35 H 1.09010 * 113.77140 * 137.91040 * 7 6 4 36 36 H 1.09008 * 113.76757 * 269.19420 * 7 6 4 37 37 H 0.96992 * 119.99868 * 180.02562 * 12 11 9 38 38 H 1.08009 * 126.18943 * 180.23406 * 21 20 19 39 39 H 1.09001 * 109.47100 * 300.00093 * 24 23 22 40 40 H 1.09008 * 109.46939 * 59.99756 * 24 23 22 41 41 H 1.08995 * 109.47547 * 179.97438 * 24 23 22 42 42 H 1.09001 * 109.47578 * 180.02562 * 25 23 22 43 43 H 1.09001 * 109.46992 * 300.00341 * 25 23 22 44 44 H 1.09002 * 109.47168 * 60.00245 * 25 23 22 45 45 H 1.09001 * 109.47216 * 299.99800 * 26 23 22 46 46 H 1.08990 * 109.47228 * 60.00487 * 26 23 22 47 47 H 1.09004 * 109.47206 * 180.02562 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.5903 1.6309 -1.4337 5 1 3.0770 0.8107 -1.9614 6 6 3.3339 2.9735 -1.5529 7 6 2.4641 3.2307 -2.7967 8 7 1.5081 2.2767 -2.2018 9 6 0.1589 2.0727 -2.3163 10 1 -0.2520 1.0843 -2.1720 11 6 -0.6807 3.1362 -2.6177 12 7 -1.9403 2.9129 -2.9281 13 14 -0.0233 4.8843 -2.5831 14 1 0.6187 5.1976 -3.8851 15 1 -1.1430 5.8297 -2.3431 16 1 0.9774 5.0152 -1.4936 17 6 2.1388 -1.1672 -0.0005 18 8 3.3503 -1.1696 0.0989 19 6 1.4045 -2.4449 -0.1221 20 7 0.0670 -2.5908 -0.1388 21 6 -0.1826 -3.8694 -0.2639 22 7 0.9987 -4.5122 -0.3157 23 6 1.1803 -5.9595 -0.4507 24 6 0.8765 -6.3797 -1.8901 25 6 0.2290 -6.6842 0.5036 26 6 2.6252 -6.3265 -0.1064 27 7 1.9430 -3.6395 -0.2321 28 1 -0.3633 -0.6011 0.8335 29 1 -0.3633 1.0225 0.1038 30 1 -0.3633 -0.4213 -0.9374 31 1 1.5641 2.0540 0.4127 32 1 3.0962 1.1694 0.6089 33 1 3.1358 3.6597 -0.7294 34 1 4.3964 2.8687 -1.7724 35 1 2.0835 4.2500 -2.8637 36 1 2.9136 2.8825 -3.7268 37 1 -2.5268 3.6559 -3.1391 38 1 -1.1600 -4.3264 -0.3139 39 1 -0.1529 -6.1183 -2.1354 40 1 1.5543 -5.8635 -2.5701 41 1 1.0120 -7.4565 -1.9907 42 1 0.3644 -7.7611 0.4036 43 1 0.4454 -6.3848 1.5291 44 1 -0.8005 -6.4228 0.2584 45 1 3.3030 -5.8103 -0.7863 46 1 2.8416 -6.0273 0.9190 47 1 2.7605 -7.4034 -0.2072 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085816491.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:25 Heat of formation + Delta-G solvation = 132.962772 kcal Electronic energy + Delta-G solvation = -28208.494581 eV Core-core repulsion = 24431.470010 eV Total energy + Delta-G solvation = -3777.024571 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.41958 -39.41086 -38.00784 -37.41017 -34.90828 -32.53849 -32.23534 -31.00866 -28.92505 -28.04290 -27.95958 -27.81767 -26.03406 -24.44712 -23.13119 -22.95281 -22.23130 -20.18345 -19.43389 -18.86742 -17.28135 -17.01245 -16.53930 -16.29581 -15.97934 -15.39885 -14.85614 -14.70516 -14.55730 -14.45033 -13.92480 -13.39090 -13.31248 -13.00920 -12.93203 -12.84282 -12.74970 -12.34429 -12.27154 -12.24608 -12.16896 -11.74744 -11.64793 -11.38334 -11.32933 -11.12475 -10.99739 -10.78926 -10.39935 -10.27391 -10.25701 -10.04643 -9.68243 -9.61810 -9.42377 -9.33904 -8.57222 -8.03979 -6.88138 -5.87970 -3.27467 1.57178 2.10290 2.29138 3.32065 3.39062 3.48886 3.53252 3.72451 3.97057 4.21078 4.25206 4.32046 4.59588 4.67853 4.77164 4.83728 4.95467 5.08690 5.14498 5.21614 5.26630 5.34372 5.34640 5.43937 5.48206 5.67720 5.78697 5.82777 5.88409 6.00162 6.10820 6.16624 6.18765 6.27902 6.38343 6.44284 6.46589 6.50850 6.55100 6.57586 6.89607 6.99169 7.20984 7.49859 7.83900 8.15155 8.41860 8.57473 8.79932 9.71577 10.45896 11.28436 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.020222 B = 0.003392 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.284167 B = 8252.833870 C = 8970.527363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.578 5.578 3 C 0.122 3.878 4 C 0.132 3.868 5 H 0.056 0.944 6 C -0.146 4.146 7 C 0.097 3.903 8 N -0.617 5.617 9 C -0.228 4.228 10 H 0.094 0.906 11 C 0.025 3.975 12 N -0.916 5.916 13 Si 0.893 3.107 14 H -0.289 1.289 15 H -0.305 1.305 16 H -0.271 1.271 17 C 0.608 3.392 18 O -0.535 6.535 19 C 0.149 3.851 20 N -0.469 5.469 21 C 0.181 3.819 22 N -0.296 5.296 23 C 0.167 3.833 24 C -0.160 4.160 25 C -0.159 4.159 26 C -0.148 4.148 27 N -0.254 5.254 28 H 0.057 0.943 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.060 0.940 35 H 0.044 0.956 36 H 0.041 0.959 37 H 0.262 0.738 38 H 0.219 0.781 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.069 0.931 44 H 0.070 0.930 45 H 0.076 0.924 46 H 0.068 0.932 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.298 -19.142 7.203 20.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.308 5.308 3 C -0.001 4.001 4 C 0.025 3.975 5 H 0.073 0.927 6 C -0.185 4.185 7 C -0.028 4.028 8 N -0.346 5.346 9 C -0.355 4.355 10 H 0.112 0.888 11 C -0.173 4.173 12 N -0.560 5.560 13 Si 0.726 3.274 14 H -0.217 1.217 15 H -0.233 1.233 16 H -0.197 1.197 17 C 0.392 3.608 18 O -0.411 6.411 19 C -0.131 4.131 20 N -0.194 5.194 21 C -0.114 4.114 22 N -0.093 5.093 23 C 0.085 3.915 24 C -0.219 4.219 25 C -0.217 4.217 26 C -0.205 4.205 27 N -0.092 5.092 28 H 0.076 0.924 29 H 0.102 0.898 30 H 0.088 0.912 31 H 0.107 0.893 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.079 0.921 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.072 0.928 38 H 0.235 0.765 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.102 0.898 42 H 0.105 0.895 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.095 0.905 46 H 0.087 0.913 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.981 -18.909 7.228 20.847 hybrid contribution -0.260 0.711 -0.431 0.871 sum 4.721 -18.197 6.797 19.991 Atomic orbital electron populations 1.22012 0.76981 1.03039 1.02218 1.47504 1.08526 1.04630 1.70186 1.21920 0.96606 0.83661 0.97901 1.22701 0.88926 0.94396 0.91462 0.92660 1.23592 0.97639 0.97979 0.99313 1.22828 0.90232 0.95008 0.94693 1.46280 1.02124 1.38387 1.47773 1.18768 0.77997 0.95197 1.43555 0.88841 1.25107 0.94756 0.97665 0.99792 1.69749 1.04990 1.31264 1.50042 0.86699 0.76791 0.85743 0.78208 1.21672 1.23297 1.19654 1.16333 0.85553 0.81129 0.77828 1.90764 1.12832 1.86574 1.50886 1.23804 0.88205 0.93529 1.07544 1.71657 1.13778 1.14983 1.19010 1.26438 0.93633 0.88651 1.02666 1.47763 1.04270 1.08217 1.49088 1.21102 0.99175 0.73456 0.97744 1.22269 1.03234 1.02862 0.93498 1.22247 0.98965 1.01277 0.99233 1.21981 0.92836 1.02035 1.03673 1.74254 1.17510 0.98682 1.18731 0.92429 0.89795 0.91171 0.89283 0.90499 0.90212 0.92144 0.93801 0.94149 0.92811 0.76492 0.91246 0.91205 0.89753 0.89492 0.91215 0.91074 0.90535 0.91327 0.90502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.92 7.40 59.85 0.44 2.36 16 2 N -0.58 -11.36 2.89 -182.68 -0.53 -11.89 16 3 C 0.12 2.34 5.27 -4.04 -0.02 2.32 16 4 C 0.13 2.76 4.49 -66.86 -0.30 2.46 16 5 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 6 C -0.15 -2.71 7.86 -25.81 -0.20 -2.91 16 7 C 0.10 2.12 7.54 -2.98 -0.02 2.10 16 8 N -0.62 -15.06 3.17 -170.74 -0.54 -15.60 16 9 C -0.23 -6.31 9.74 -15.06 -0.15 -6.46 16 10 H 0.09 2.73 5.73 -52.49 -0.30 2.43 16 11 C 0.03 0.73 5.50 -17.43 -0.10 0.63 16 12 N -0.92 -27.86 13.97 55.49 0.78 -27.09 16 13 Si 0.89 22.81 24.76 -169.99 -4.21 18.60 16 14 H -0.29 -7.36 7.02 56.52 0.40 -6.97 16 15 H -0.30 -7.89 7.11 56.52 0.40 -7.49 16 16 H -0.27 -6.63 6.78 56.52 0.38 -6.25 16 17 C 0.61 12.34 7.63 -12.32 -0.09 12.24 16 18 O -0.54 -11.85 16.74 5.31 0.09 -11.76 16 19 C 0.15 2.73 7.71 -156.36 -1.21 1.52 16 20 N -0.47 -7.64 8.00 -12.36 -0.10 -7.74 16 21 C 0.18 2.18 11.71 -90.48 -1.06 1.12 16 22 N -0.30 -3.58 3.17 -49.84 -0.16 -3.74 16 23 C 0.17 1.29 1.22 -131.82 -0.16 1.13 16 24 C -0.16 -1.02 8.71 37.16 0.32 -0.70 16 25 C -0.16 -0.77 8.29 37.16 0.31 -0.46 16 26 C -0.15 -1.15 8.04 37.16 0.30 -0.85 16 27 N -0.25 -4.17 11.09 32.07 0.36 -3.81 16 28 H 0.06 1.00 7.08 -51.93 -0.37 0.63 16 29 H 0.08 1.71 7.07 -51.93 -0.37 1.35 16 30 H 0.07 1.49 6.40 -51.93 -0.33 1.16 16 31 H 0.09 1.70 7.75 -51.93 -0.40 1.30 16 32 H 0.08 1.37 7.55 -51.93 -0.39 0.98 16 33 H 0.08 1.42 8.10 -51.93 -0.42 1.00 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.04 1.01 3.73 -51.92 -0.19 0.81 16 36 H 0.04 0.86 8.14 -51.92 -0.42 0.43 16 37 H 0.26 7.63 8.31 -40.82 -0.34 7.30 16 38 H 0.22 1.57 7.54 -52.48 -0.40 1.17 16 39 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 41 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 43 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.07 0.27 7.35 -51.93 -0.38 -0.11 16 45 H 0.08 0.75 8.02 -51.93 -0.42 0.33 16 46 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 47 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 371.87 15.07 5.60 5.60 Total: -1.00 -35.52 371.87 -8.00 -43.52 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -7.36 Total: -0.60 kcal Atomic # 6 Polarization: 16.43 SS G_CDS: -1.94 Total: 14.50 kcal Atomic # 7 Polarization: -69.67 SS G_CDS: -0.20 Total: -69.87 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: 0.09 Total: -11.76 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -4.21 Total: 18.60 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.52 -8.00 -43.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085816491.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.483 kcal (2) G-P(sol) polarization free energy of solvation -35.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds