Wall clock time and date at job start Fri Apr 10 2020 18:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46505 * 120.00048 * 2 1 4 4 C 1.52996 * 109.47135 * 263.66916 * 3 2 1 5 5 H 1.09000 * 112.96751 * 310.04279 * 4 3 2 6 6 C 1.53948 * 113.76759 * 178.36139 * 4 3 2 7 7 C 1.53943 * 86.28975 * 222.09625 * 6 4 3 8 8 N 1.47573 * 86.12083 * 23.60728 * 7 6 4 9 9 C 1.36938 * 134.49801 * 155.35882 * 8 7 6 10 10 H 1.08002 * 120.00205 * 151.21261 * 9 8 7 11 11 C 1.38815 * 119.99452 * 331.20983 * 9 8 7 12 12 N 1.31628 * 119.99771 * 169.65603 * 11 9 8 13 13 Si 1.86795 * 120.00490 * 349.65762 * 11 9 8 14 14 H 1.48504 * 109.47198 * 84.65088 * 13 11 9 15 15 H 1.48496 * 109.47415 * 204.65226 * 13 11 9 16 16 H 1.48506 * 109.46732 * 324.65421 * 13 11 9 17 17 C 1.34773 * 119.99819 * 180.02562 * 2 1 3 18 18 O 1.21560 * 120.00023 * 185.41937 * 17 2 1 19 19 C 1.47871 * 120.00513 * 5.42070 * 17 2 1 20 20 N 1.34550 * 126.04104 * 354.74053 * 19 17 2 21 21 C 1.30869 * 107.26509 * 179.78834 * 20 19 17 22 22 N 1.34588 * 107.62609 * 0.38611 * 21 20 19 23 23 C 1.46495 * 125.74736 * 179.86475 * 22 21 20 24 24 C 1.53003 * 109.47247 * 74.71812 * 23 22 21 25 25 C 1.52995 * 109.47632 * 314.71791 * 23 22 21 26 26 C 1.53001 * 109.46977 * 194.71788 * 23 22 21 27 27 N 1.28852 * 108.50038 * 359.60722 * 22 21 20 28 28 H 1.08999 * 109.47214 * 234.20312 * 1 2 3 29 29 H 1.09005 * 109.46807 * 354.20532 * 1 2 3 30 30 H 1.09001 * 109.47103 * 114.19969 * 1 2 3 31 31 H 1.09000 * 109.46824 * 23.67679 * 3 2 1 32 32 H 1.09003 * 109.46761 * 143.66775 * 3 2 1 33 33 H 1.09005 * 113.74293 * 336.44098 * 6 4 3 34 34 H 1.08997 * 113.74236 * 107.64192 * 6 4 3 35 35 H 1.09010 * 113.77140 * 137.91040 * 7 6 4 36 36 H 1.09008 * 113.76757 * 269.19420 * 7 6 4 37 37 H 0.96992 * 119.99868 * 180.02562 * 12 11 9 38 38 H 1.08009 * 126.18943 * 180.23406 * 21 20 19 39 39 H 1.09001 * 109.47100 * 300.00093 * 24 23 22 40 40 H 1.09008 * 109.46939 * 59.99756 * 24 23 22 41 41 H 1.08995 * 109.47547 * 179.97438 * 24 23 22 42 42 H 1.09001 * 109.47578 * 180.02562 * 25 23 22 43 43 H 1.09001 * 109.46992 * 300.00341 * 25 23 22 44 44 H 1.09002 * 109.47168 * 60.00245 * 25 23 22 45 45 H 1.09001 * 109.47216 * 299.99800 * 26 23 22 46 46 H 1.08990 * 109.47228 * 60.00487 * 26 23 22 47 47 H 1.09004 * 109.47206 * 180.02562 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.5903 1.6309 -1.4337 5 1 3.0770 0.8107 -1.9614 6 6 3.3339 2.9735 -1.5529 7 6 2.4641 3.2307 -2.7967 8 7 1.5081 2.2767 -2.2018 9 6 0.1589 2.0727 -2.3163 10 1 -0.2520 1.0843 -2.1720 11 6 -0.6807 3.1362 -2.6177 12 7 -1.9403 2.9129 -2.9281 13 14 -0.0233 4.8843 -2.5831 14 1 0.6187 5.1976 -3.8851 15 1 -1.1430 5.8297 -2.3431 16 1 0.9774 5.0152 -1.4936 17 6 2.1388 -1.1672 -0.0005 18 8 3.3503 -1.1696 0.0989 19 6 1.4045 -2.4449 -0.1221 20 7 0.0670 -2.5908 -0.1388 21 6 -0.1826 -3.8694 -0.2639 22 7 0.9987 -4.5122 -0.3157 23 6 1.1803 -5.9595 -0.4507 24 6 0.8765 -6.3797 -1.8901 25 6 0.2290 -6.6842 0.5036 26 6 2.6252 -6.3265 -0.1064 27 7 1.9430 -3.6395 -0.2321 28 1 -0.3633 -0.6011 0.8335 29 1 -0.3633 1.0225 0.1038 30 1 -0.3633 -0.4213 -0.9374 31 1 1.5641 2.0540 0.4127 32 1 3.0962 1.1694 0.6089 33 1 3.1358 3.6597 -0.7294 34 1 4.3964 2.8687 -1.7724 35 1 2.0835 4.2500 -2.8637 36 1 2.9136 2.8825 -3.7268 37 1 -2.5268 3.6559 -3.1391 38 1 -1.1600 -4.3264 -0.3139 39 1 -0.1529 -6.1183 -2.1354 40 1 1.5543 -5.8635 -2.5701 41 1 1.0120 -7.4565 -1.9907 42 1 0.3644 -7.7611 0.4036 43 1 0.4454 -6.3848 1.5291 44 1 -0.8005 -6.4228 0.2584 45 1 3.3030 -5.8103 -0.7863 46 1 2.8416 -6.0273 0.9190 47 1 2.7605 -7.4034 -0.2072 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085816491.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:25 Heat of formation + Delta-G solvation = 110.115392 kcal Electronic energy + Delta-G solvation = -28209.485318 eV Core-core repulsion = 24431.470010 eV Total energy + Delta-G solvation = -3778.015308 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.51806 -40.99146 -39.65086 -38.20228 -36.49879 -34.38462 -33.60885 -32.14249 -30.70063 -29.72981 -28.47891 -28.40678 -27.57798 -25.87153 -25.04469 -24.00289 -23.67447 -21.07897 -20.98627 -20.47776 -19.03709 -18.30238 -17.72224 -17.62977 -17.35619 -17.09381 -16.51340 -15.94111 -15.77101 -15.25907 -15.10819 -14.93963 -14.77430 -14.69719 -14.27392 -13.92673 -13.86599 -13.35632 -13.30024 -13.21011 -13.09763 -12.99884 -12.84025 -12.77519 -12.72940 -12.60341 -12.38503 -12.12380 -12.02210 -11.98582 -11.55634 -11.39687 -11.37730 -11.28710 -11.12770 -10.68042 -10.53629 -9.64688 -8.88499 -8.07418 -5.44326 0.32542 1.12649 1.21180 1.35184 1.41646 1.52674 1.94064 2.27718 2.49280 2.95545 3.05604 3.24882 3.26236 3.66245 3.71664 3.78139 3.79336 3.87273 4.18006 4.28285 4.41099 4.52946 4.56518 4.57875 4.60236 4.62016 4.63792 4.68484 4.77872 4.79742 4.80872 4.81503 4.90319 4.93153 4.99253 5.08616 5.16179 5.20606 5.23176 5.38061 5.44559 5.55169 5.64072 5.72682 6.23558 6.31839 6.64580 6.86680 7.14554 7.54494 8.40050 9.12579 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.020222 B = 0.003392 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.284167 B = 8252.833870 C = 8970.527363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.122 3.878 2 N -0.581 5.581 3 C 0.124 3.876 4 C 0.130 3.870 5 H 0.040 0.960 6 C -0.121 4.121 7 C 0.086 3.914 8 N -0.640 5.640 9 C -0.210 4.210 10 H 0.066 0.934 11 C -0.031 4.031 12 N -0.962 5.962 13 Si 0.950 3.050 14 H -0.288 1.288 15 H -0.312 1.312 16 H -0.251 1.251 17 C 0.604 3.396 18 O -0.562 6.562 19 C 0.114 3.886 20 N -0.499 5.499 21 C 0.194 3.806 22 N -0.286 5.286 23 C 0.155 3.845 24 C -0.157 4.157 25 C -0.154 4.154 26 C -0.147 4.147 27 N -0.269 5.269 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.045 0.955 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.039 0.961 36 H 0.049 0.951 37 H 0.259 0.741 38 H 0.267 0.733 39 H 0.078 0.922 40 H 0.042 0.958 41 H 0.117 0.883 42 H 0.116 0.884 43 H 0.059 0.941 44 H 0.087 0.913 45 H 0.048 0.952 46 H 0.053 0.947 47 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.947 -20.616 7.943 22.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 N -0.312 5.312 3 C 0.001 3.999 4 C 0.023 3.977 5 H 0.057 0.943 6 C -0.159 4.159 7 C -0.038 4.038 8 N -0.369 5.369 9 C -0.339 4.339 10 H 0.083 0.917 11 C -0.226 4.226 12 N -0.609 5.609 13 Si 0.780 3.220 14 H -0.215 1.215 15 H -0.241 1.241 16 H -0.175 1.175 17 C 0.390 3.610 18 O -0.440 6.440 19 C -0.164 4.164 20 N -0.225 5.225 21 C -0.101 4.101 22 N -0.083 5.083 23 C 0.075 3.925 24 C -0.215 4.215 25 C -0.212 4.212 26 C -0.204 4.204 27 N -0.110 5.110 28 H 0.093 0.907 29 H 0.085 0.915 30 H 0.063 0.937 31 H 0.109 0.891 32 H 0.112 0.888 33 H 0.113 0.887 34 H 0.114 0.886 35 H 0.057 0.943 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.283 0.717 39 H 0.096 0.904 40 H 0.061 0.939 41 H 0.135 0.865 42 H 0.134 0.866 43 H 0.078 0.922 44 H 0.106 0.894 45 H 0.068 0.932 46 H 0.072 0.928 47 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 5.671 -20.403 7.981 22.630 hybrid contribution -0.425 0.901 -0.713 1.225 sum 5.246 -19.501 7.267 21.463 Atomic orbital electron populations 1.21727 0.76914 1.01850 1.01540 1.47574 1.08550 1.04948 1.70087 1.21911 0.97281 0.83573 0.97102 1.22763 0.87953 0.95278 0.91663 0.94259 1.23453 0.98925 0.95781 0.97732 1.23041 0.90214 0.93929 0.96623 1.46552 1.01704 1.39275 1.49331 1.18672 0.79881 0.94032 1.41269 0.91652 1.25681 0.94984 1.01233 1.00654 1.69881 1.06422 1.32012 1.52572 0.85793 0.76275 0.81187 0.78703 1.21543 1.24125 1.17511 1.16627 0.85445 0.81938 0.77034 1.90718 1.13863 1.87185 1.52227 1.23468 0.89135 0.93320 1.10503 1.71545 1.12931 1.17628 1.20415 1.27263 0.95134 0.87503 1.00158 1.48238 1.03595 1.09365 1.47083 1.21687 1.00021 0.71085 0.99687 1.22298 1.02997 1.04588 0.91613 1.22289 0.98832 1.02501 0.97550 1.22002 0.92525 1.03968 1.01924 1.74168 1.19269 0.98812 1.18742 0.90691 0.91450 0.93664 0.89132 0.88793 0.88735 0.88555 0.94322 0.93337 0.93166 0.71726 0.90352 0.93860 0.86494 0.86567 0.92233 0.89412 0.93231 0.92805 0.86973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.86 7.40 127.77 0.95 5.81 16 2 N -0.58 -23.36 2.89 -850.15 -2.46 -25.82 16 3 C 0.12 4.70 5.27 86.38 0.46 5.16 16 4 C 0.13 5.31 4.49 45.09 0.20 5.51 16 5 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 6 C -0.12 -4.09 7.86 31.25 0.25 -3.84 16 7 C 0.09 3.59 7.54 86.48 0.65 4.24 16 8 N -0.64 -31.00 3.17 -694.11 -2.20 -33.20 16 9 C -0.21 -11.88 9.74 84.03 0.82 -11.06 16 10 H 0.07 4.01 5.73 -2.91 -0.02 3.99 16 11 C -0.03 -1.84 5.50 84.86 0.47 -1.37 16 12 N -0.96 -60.23 13.97 21.65 0.30 -59.92 16 13 Si 0.95 47.12 24.76 68.60 1.70 48.82 16 14 H -0.29 -14.08 7.02 99.48 0.70 -13.38 16 15 H -0.31 -15.75 7.11 99.48 0.71 -15.05 16 16 H -0.25 -11.46 6.78 99.48 0.67 -10.78 16 17 C 0.60 25.23 7.63 86.79 0.66 25.89 16 18 O -0.56 -25.49 16.74 -3.90 -0.07 -25.56 16 19 C 0.11 4.29 7.71 137.13 1.06 5.35 16 20 N -0.50 -16.34 8.00 -193.03 -1.54 -17.89 16 21 C 0.19 4.37 11.71 180.30 2.11 6.48 16 22 N -0.29 -6.63 3.17 -311.59 -0.99 -7.61 16 23 C 0.16 2.05 1.22 3.60 0.00 2.06 16 24 C -0.16 -1.60 8.71 71.98 0.63 -0.97 16 25 C -0.15 -0.92 8.29 71.98 0.60 -0.33 16 26 C -0.15 -2.10 8.04 71.98 0.58 -1.53 16 27 N -0.27 -9.01 11.09 -52.44 -0.58 -9.59 16 28 H 0.07 2.68 7.08 -2.39 -0.02 2.66 16 29 H 0.07 2.86 7.07 -2.38 -0.02 2.85 16 30 H 0.04 2.02 6.40 -2.39 -0.02 2.01 16 31 H 0.09 3.39 7.75 -2.39 -0.02 3.37 16 32 H 0.09 3.24 7.55 -2.39 -0.02 3.22 16 33 H 0.09 2.98 8.10 -2.38 -0.02 2.96 16 34 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 35 H 0.04 1.68 3.73 -2.38 -0.01 1.67 16 36 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16 37 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 38 H 0.27 2.89 7.54 -2.91 -0.02 2.87 16 39 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.04 0.68 8.14 -2.38 -0.02 0.66 16 41 H 0.12 0.45 8.14 -2.39 -0.02 0.43 16 42 H 0.12 0.08 8.14 -2.39 -0.02 0.06 16 43 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 44 H 0.09 0.27 7.35 -2.39 -0.02 0.25 16 45 H 0.05 0.98 8.02 -2.39 -0.02 0.96 16 46 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 47 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -81.20 371.87 4.51 -76.69 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: 0.93 Total: 12.69 kcal Atomic # 6 Polarization: 31.97 SS G_CDS: 9.42 Total: 41.39 kcal Atomic # 7 Polarization: -146.56 SS G_CDS: -7.47 Total: -154.03 kcal Atomic # 8 Polarization: -25.49 SS G_CDS: -0.07 Total: -25.56 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 1.70 Total: 48.82 kcal Total: -81.20 4.51 -76.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085816491.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.807 kcal (2) G-P(sol) polarization free energy of solvation -81.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds