Wall clock time and date at job start Fri Apr 10 2020 18:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36594 * 126.57900 * 2 1 4 4 C 1.47521 * 125.77354 * 359.96804 * 3 2 1 5 5 O 1.21604 * 119.99649 * 355.91150 * 4 3 2 6 6 N 1.34773 * 120.00442 * 175.90848 * 4 3 2 7 7 C 1.46503 * 119.99468 * 5.25968 * 6 4 3 8 8 C 1.46502 * 120.00370 * 185.26718 * 6 4 3 9 9 C 1.52998 * 109.47337 * 84.46562 * 8 6 4 10 10 H 1.08996 * 112.96799 * 310.60649 * 9 8 6 11 11 C 1.53938 * 113.76600 * 178.92312 * 9 8 6 12 12 C 1.53944 * 86.29347 * 222.09380 * 11 9 8 13 13 N 1.47587 * 113.76564 * 82.28352 * 9 8 6 14 14 C 1.36935 * 134.49287 * 318.92512 * 13 9 8 15 15 H 1.08000 * 119.99862 * 2.18466 * 14 13 9 16 16 C 1.38811 * 119.99882 * 182.18191 * 14 13 9 17 17 N 1.31619 * 119.99826 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99925 * 180.02562 * 16 14 13 19 19 H 1.48507 * 109.47349 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47202 * 120.00028 * 18 16 14 21 21 H 1.48497 * 109.47095 * 240.00316 * 18 16 14 22 22 N 1.34399 * 108.45602 * 179.83043 * 3 2 1 23 23 N 1.28757 * 109.52521 * 0.43894 * 22 3 2 24 24 N 1.34817 * 126.57819 * 180.30418 * 2 1 3 25 25 C 1.46493 * 126.59553 * 359.97438 * 24 2 1 26 26 C 1.52999 * 109.47279 * 119.99683 * 25 24 2 27 27 C 1.53004 * 109.47386 * 239.99749 * 25 24 2 28 28 H 1.09005 * 109.47142 * 269.69243 * 1 2 3 29 29 H 1.08999 * 109.47307 * 149.69367 * 1 2 3 30 30 H 1.08997 * 109.47482 * 29.69152 * 1 2 3 31 31 H 1.08993 * 109.47234 * 55.87305 * 7 6 4 32 32 H 1.09000 * 109.46518 * 175.86793 * 7 6 4 33 33 H 1.09000 * 109.47424 * 295.86454 * 7 6 4 34 34 H 1.08994 * 109.47083 * 204.47161 * 8 6 4 35 35 H 1.09004 * 109.46591 * 324.46501 * 8 6 4 36 36 H 1.09002 * 113.74799 * 336.44303 * 11 9 8 37 37 H 1.09005 * 113.74697 * 107.64506 * 11 9 8 38 38 H 1.08996 * 113.77314 * 137.90603 * 12 11 9 39 39 H 1.09001 * 113.77133 * 269.20093 * 12 11 9 40 40 H 0.97006 * 119.99665 * 179.97438 * 17 16 14 41 41 H 1.09002 * 109.47460 * 359.97438 * 25 24 2 42 42 H 1.09002 * 109.46667 * 59.99768 * 26 25 24 43 43 H 1.08995 * 109.47299 * 179.97438 * 26 25 24 44 44 H 1.08998 * 109.47350 * 300.00110 * 26 25 24 45 45 H 1.09002 * 109.46974 * 300.00485 * 27 25 24 46 46 H 1.09000 * 109.46605 * 60.00108 * 27 25 24 47 47 H 1.08993 * 109.47211 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8738 2.5027 -0.0007 5 8 0.6885 2.7635 -0.0764 6 7 2.7788 3.4979 0.0827 7 6 4.2108 3.1896 0.0577 8 6 2.3306 4.8879 0.1984 9 6 2.0415 5.2101 1.6658 10 1 1.4075 4.4659 2.1478 11 6 1.5865 6.6612 1.9044 12 6 2.5096 6.6426 3.1362 13 7 3.2442 5.5617 2.4457 14 6 4.5247 5.0800 2.5042 15 1 4.8304 4.2779 1.8489 16 6 5.4298 5.6228 3.4059 17 7 5.0571 6.6001 4.2049 18 14 7.1768 4.9662 3.4854 19 1 7.3418 3.8764 2.4902 20 1 8.1318 6.0621 3.1814 21 1 7.4458 4.4386 4.8471 22 7 3.5983 0.6788 0.0038 23 7 3.6299 -0.6083 -0.0032 24 7 2.3104 -1.0826 -0.0057 25 6 1.8863 -2.4848 -0.0127 26 6 2.4286 -3.1755 -1.2656 27 6 2.4296 -3.1881 1.2328 28 1 -0.3634 -0.0055 1.0277 29 1 -0.3634 -0.8872 -0.5186 30 1 -0.3634 0.8927 -0.5090 31 1 4.4446 2.6221 -0.8430 32 1 4.7823 4.1177 0.0610 33 1 4.4709 2.5997 0.9367 34 1 3.1101 5.5530 -0.1730 35 1 1.4235 5.0272 -0.3898 36 1 1.9062 7.3549 1.1268 37 1 0.5282 6.7549 2.1483 38 1 3.0892 7.5567 3.2647 39 1 2.0136 6.3212 4.0521 40 1 5.6895 6.9791 4.8353 41 1 0.7975 -2.5352 -0.0121 42 1 3.5174 -3.1251 -1.2658 43 1 2.1134 -4.2189 -1.2705 44 1 2.0416 -2.6745 -2.1529 45 1 3.5184 -3.1378 1.2327 46 1 2.0432 -2.6961 2.1254 47 1 2.1137 -4.2313 1.2279 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085896539.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:31 Heat of formation + Delta-G solvation = 125.135086 kcal Electronic energy + Delta-G solvation = -28273.906429 eV Core-core repulsion = 24496.542424 eV Total energy + Delta-G solvation = -3777.364005 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.25457 -39.31033 -37.62108 -36.59243 -34.95235 -33.01714 -32.14868 -31.09206 -28.71328 -27.94500 -27.78789 -27.34778 -25.93593 -24.01960 -23.30277 -23.20706 -21.56993 -20.37585 -19.17195 -18.86270 -17.32344 -16.77048 -16.20707 -16.13654 -15.82168 -14.93095 -14.79255 -14.69515 -14.26634 -13.96526 -13.71639 -13.52516 -13.35251 -13.15653 -13.12753 -12.77512 -12.70465 -12.59809 -12.38353 -12.14080 -11.96027 -11.85126 -11.52184 -11.32622 -11.26951 -11.01611 -10.87623 -10.78465 -10.63651 -10.37552 -10.20804 -9.97098 -9.59112 -9.51645 -9.17866 -9.04457 -8.69112 -8.04329 -6.74609 -5.65942 -2.96170 1.15943 1.91490 1.94781 3.38697 3.44875 3.50999 3.52519 3.60163 3.99585 4.18916 4.35350 4.46284 4.53872 4.55563 4.73815 4.95318 5.05496 5.13210 5.23542 5.24689 5.27392 5.35773 5.51179 5.54169 5.65480 5.67385 5.72812 5.80626 5.84967 5.95067 5.98070 6.06198 6.20190 6.21050 6.35012 6.43273 6.55383 6.59905 6.73420 6.81837 7.09014 7.38324 7.53711 7.70193 7.82454 8.06154 8.10251 8.52136 9.16118 9.83443 10.74806 11.51979 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.014430 B = 0.003917 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.919083 B = 7146.833281 C = 8400.791260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.117 3.883 3 C -0.096 4.096 4 C 0.599 3.401 5 O -0.550 6.550 6 N -0.584 5.584 7 C 0.091 3.909 8 C 0.119 3.881 9 C 0.129 3.871 10 H 0.045 0.955 11 C -0.159 4.159 12 C 0.161 3.839 13 N -0.602 5.602 14 C -0.222 4.222 15 H 0.092 0.908 16 C -0.011 4.011 17 N -0.922 5.922 18 Si 0.900 3.100 19 H -0.277 1.277 20 H -0.291 1.291 21 H -0.293 1.293 22 N -0.195 5.195 23 N -0.073 5.073 24 N -0.360 5.360 25 C 0.145 3.855 26 C -0.162 4.162 27 C -0.163 4.163 28 H 0.089 0.911 29 H 0.070 0.930 30 H 0.114 0.886 31 H 0.057 0.943 32 H 0.084 0.916 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.051 0.949 38 H 0.070 0.930 39 H 0.023 0.977 40 H 0.250 0.750 41 H 0.107 0.893 42 H 0.074 0.926 43 H 0.081 0.919 44 H 0.063 0.937 45 H 0.075 0.925 46 H 0.064 0.936 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.872 -17.466 -10.923 22.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.020 4.020 3 C -0.235 4.235 4 C 0.385 3.615 5 O -0.428 6.428 6 N -0.313 5.313 7 C -0.052 4.052 8 C -0.004 4.004 9 C 0.021 3.979 10 H 0.062 0.938 11 C -0.198 4.198 12 C 0.036 3.964 13 N -0.329 5.329 14 C -0.350 4.350 15 H 0.110 0.890 16 C -0.207 4.207 17 N -0.570 5.570 18 Si 0.731 3.269 19 H -0.202 1.202 20 H -0.219 1.219 21 H -0.220 1.220 22 N -0.068 5.068 23 N -0.052 5.052 24 N -0.147 5.147 25 C 0.043 3.957 26 C -0.220 4.220 27 C -0.221 4.221 28 H 0.108 0.892 29 H 0.089 0.911 30 H 0.132 0.868 31 H 0.076 0.924 32 H 0.103 0.897 33 H 0.087 0.913 34 H 0.103 0.897 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.070 0.930 38 H 0.088 0.912 39 H 0.041 0.959 40 H 0.060 0.940 41 H 0.125 0.875 42 H 0.093 0.907 43 H 0.099 0.901 44 H 0.082 0.918 45 H 0.094 0.906 46 H 0.083 0.917 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -8.630 -17.760 -10.850 22.530 hybrid contribution 0.181 -0.414 0.490 0.667 sum -8.449 -18.174 -10.359 22.561 Atomic orbital electron populations 1.20707 0.84987 1.05163 1.04507 1.21868 0.96099 0.86412 0.97666 1.21272 0.88928 0.95561 1.17787 1.16726 0.85334 0.82491 0.76916 1.90701 1.15965 1.83490 1.52672 1.47564 1.07189 1.06658 1.69883 1.22071 0.79449 1.01911 1.01795 1.22004 1.00287 0.79943 0.98157 1.22597 0.89470 0.94721 0.91155 0.93776 1.23766 0.98289 0.96667 1.01040 1.22165 0.89521 0.93385 0.91356 1.46229 1.04788 1.37217 1.44635 1.19474 0.84313 1.14898 1.16309 0.89022 1.24769 0.98104 0.99245 0.98570 1.69846 1.33957 1.27892 1.25300 0.86208 0.85069 0.78149 0.77472 1.20207 1.21854 1.21996 1.74880 1.18944 1.03535 1.09468 1.81928 0.96217 1.03811 1.23221 1.50607 1.06479 1.07012 1.50647 1.21588 1.00328 0.75586 0.98188 1.22151 1.03283 1.00754 0.95796 1.22156 1.03313 1.00652 0.95961 0.89243 0.91095 0.86770 0.92438 0.89709 0.91272 0.89686 0.90531 0.90726 0.92998 0.91215 0.95873 0.93977 0.87467 0.90680 0.90062 0.91794 0.90644 0.91660 0.90060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.93 9.46 36.01 0.34 -0.59 16 2 C 0.12 1.55 7.02 -81.87 -0.57 0.98 16 3 C -0.10 -1.61 6.76 -83.55 -0.56 -2.18 16 4 C 0.60 11.05 7.62 -12.48 -0.10 10.95 16 5 O -0.55 -10.46 14.33 5.27 0.08 -10.38 16 6 N -0.58 -10.99 2.89 -182.81 -0.53 -11.52 16 7 C 0.09 1.67 7.24 59.85 0.43 2.10 16 8 C 0.12 2.24 5.27 -4.04 -0.02 2.22 16 9 C 0.13 2.75 4.50 -66.86 -0.30 2.45 16 10 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 11 C -0.16 -3.10 7.86 -25.80 -0.20 -3.30 16 12 C 0.16 3.90 7.47 -2.85 -0.02 3.88 16 13 N -0.60 -15.44 3.59 -169.73 -0.61 -16.04 16 14 C -0.22 -6.12 10.26 -15.06 -0.15 -6.27 16 15 H 0.09 2.38 3.73 -52.49 -0.20 2.18 16 16 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 17 N -0.92 -27.79 11.45 55.49 0.64 -27.16 16 18 Si 0.90 22.49 29.55 -169.99 -5.02 17.47 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 21 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 22 N -0.20 -3.37 8.91 32.84 0.29 -3.08 16 23 N -0.07 -1.12 13.67 60.35 0.82 -0.29 16 24 N -0.36 -4.33 3.28 -50.41 -0.17 -4.49 16 25 C 0.14 1.07 3.68 -67.93 -0.25 0.82 16 26 C -0.16 -1.00 9.47 37.16 0.35 -0.65 16 27 C -0.16 -1.12 9.47 37.16 0.35 -0.76 16 28 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.07 0.45 7.18 -51.93 -0.37 0.08 16 30 H 0.11 1.31 6.33 -51.93 -0.33 0.98 16 31 H 0.06 0.96 7.21 -51.93 -0.37 0.59 16 32 H 0.08 1.60 6.50 -51.93 -0.34 1.26 16 33 H 0.07 1.40 6.70 -51.93 -0.35 1.06 16 34 H 0.08 1.59 7.78 -51.93 -0.40 1.19 16 35 H 0.08 1.33 7.52 -51.93 -0.39 0.94 16 36 H 0.07 1.37 8.10 -51.93 -0.42 0.95 16 37 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.07 1.83 7.27 -51.93 -0.38 1.46 16 39 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 41 H 0.11 0.53 6.79 -51.93 -0.35 0.18 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 44 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 375.43 15.07 5.66 5.66 Total: -1.00 -34.16 375.43 -6.91 -41.07 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -7.27 Total: -0.47 kcal Atomic # 6 Polarization: 10.04 SS G_CDS: -0.80 Total: 9.24 kcal Atomic # 7 Polarization: -63.04 SS G_CDS: 0.45 Total: -62.58 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.08 Total: -10.38 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.16 -6.91 -41.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085896539.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.205 kcal (2) G-P(sol) polarization free energy of solvation -34.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds