Wall clock time and date at job start Fri Apr 10 2020 18:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36594 * 126.57900 * 2 1 4 4 C 1.47521 * 125.77354 * 359.96804 * 3 2 1 5 5 O 1.21604 * 119.99649 * 355.91150 * 4 3 2 6 6 N 1.34773 * 120.00442 * 175.90848 * 4 3 2 7 7 C 1.46503 * 119.99468 * 5.25968 * 6 4 3 8 8 C 1.46502 * 120.00370 * 185.26718 * 6 4 3 9 9 C 1.52998 * 109.47337 * 84.46562 * 8 6 4 10 10 H 1.08996 * 112.96799 * 310.60649 * 9 8 6 11 11 C 1.53938 * 113.76600 * 178.92312 * 9 8 6 12 12 C 1.53944 * 86.29347 * 222.09380 * 11 9 8 13 13 N 1.47587 * 113.76564 * 82.28352 * 9 8 6 14 14 C 1.36935 * 134.49287 * 318.92512 * 13 9 8 15 15 H 1.08000 * 119.99862 * 2.18466 * 14 13 9 16 16 C 1.38811 * 119.99882 * 182.18191 * 14 13 9 17 17 N 1.31619 * 119.99826 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99925 * 180.02562 * 16 14 13 19 19 H 1.48507 * 109.47349 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47202 * 120.00028 * 18 16 14 21 21 H 1.48497 * 109.47095 * 240.00316 * 18 16 14 22 22 N 1.34399 * 108.45602 * 179.83043 * 3 2 1 23 23 N 1.28757 * 109.52521 * 0.43894 * 22 3 2 24 24 N 1.34817 * 126.57819 * 180.30418 * 2 1 3 25 25 C 1.46493 * 126.59553 * 359.97438 * 24 2 1 26 26 C 1.52999 * 109.47279 * 119.99683 * 25 24 2 27 27 C 1.53004 * 109.47386 * 239.99749 * 25 24 2 28 28 H 1.09005 * 109.47142 * 269.69243 * 1 2 3 29 29 H 1.08999 * 109.47307 * 149.69367 * 1 2 3 30 30 H 1.08997 * 109.47482 * 29.69152 * 1 2 3 31 31 H 1.08993 * 109.47234 * 55.87305 * 7 6 4 32 32 H 1.09000 * 109.46518 * 175.86793 * 7 6 4 33 33 H 1.09000 * 109.47424 * 295.86454 * 7 6 4 34 34 H 1.08994 * 109.47083 * 204.47161 * 8 6 4 35 35 H 1.09004 * 109.46591 * 324.46501 * 8 6 4 36 36 H 1.09002 * 113.74799 * 336.44303 * 11 9 8 37 37 H 1.09005 * 113.74697 * 107.64506 * 11 9 8 38 38 H 1.08996 * 113.77314 * 137.90603 * 12 11 9 39 39 H 1.09001 * 113.77133 * 269.20093 * 12 11 9 40 40 H 0.97006 * 119.99665 * 179.97438 * 17 16 14 41 41 H 1.09002 * 109.47460 * 359.97438 * 25 24 2 42 42 H 1.09002 * 109.46667 * 59.99768 * 26 25 24 43 43 H 1.08995 * 109.47299 * 179.97438 * 26 25 24 44 44 H 1.08998 * 109.47350 * 300.00110 * 26 25 24 45 45 H 1.09002 * 109.46974 * 300.00485 * 27 25 24 46 46 H 1.09000 * 109.46605 * 60.00108 * 27 25 24 47 47 H 1.08993 * 109.47211 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8738 2.5027 -0.0007 5 8 0.6885 2.7635 -0.0764 6 7 2.7788 3.4979 0.0827 7 6 4.2108 3.1896 0.0577 8 6 2.3306 4.8879 0.1984 9 6 2.0415 5.2101 1.6658 10 1 1.4075 4.4659 2.1478 11 6 1.5865 6.6612 1.9044 12 6 2.5096 6.6426 3.1362 13 7 3.2442 5.5617 2.4457 14 6 4.5247 5.0800 2.5042 15 1 4.8304 4.2779 1.8489 16 6 5.4298 5.6228 3.4059 17 7 5.0571 6.6001 4.2049 18 14 7.1768 4.9662 3.4854 19 1 7.3418 3.8764 2.4902 20 1 8.1318 6.0621 3.1814 21 1 7.4458 4.4386 4.8471 22 7 3.5983 0.6788 0.0038 23 7 3.6299 -0.6083 -0.0032 24 7 2.3104 -1.0826 -0.0057 25 6 1.8863 -2.4848 -0.0127 26 6 2.4286 -3.1755 -1.2656 27 6 2.4296 -3.1881 1.2328 28 1 -0.3634 -0.0055 1.0277 29 1 -0.3634 -0.8872 -0.5186 30 1 -0.3634 0.8927 -0.5090 31 1 4.4446 2.6221 -0.8430 32 1 4.7823 4.1177 0.0610 33 1 4.4709 2.5997 0.9367 34 1 3.1101 5.5530 -0.1730 35 1 1.4235 5.0272 -0.3898 36 1 1.9062 7.3549 1.1268 37 1 0.5282 6.7549 2.1483 38 1 3.0892 7.5567 3.2647 39 1 2.0136 6.3212 4.0521 40 1 5.6895 6.9791 4.8353 41 1 0.7975 -2.5352 -0.0121 42 1 3.5174 -3.1251 -1.2658 43 1 2.1134 -4.2189 -1.2705 44 1 2.0416 -2.6745 -2.1529 45 1 3.5184 -3.1378 1.2327 46 1 2.0432 -2.6961 2.1254 47 1 2.1137 -4.2313 1.2279 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085896539.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:30 Heat of formation + Delta-G solvation = 102.719871 kcal Electronic energy + Delta-G solvation = -28274.878426 eV Core-core repulsion = 24496.542424 eV Total energy + Delta-G solvation = -3778.336002 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.33865 -40.78647 -39.34758 -37.39091 -36.40016 -34.24276 -33.97017 -32.13839 -30.24725 -29.65572 -28.66560 -28.28890 -27.39657 -25.22716 -24.95929 -24.74113 -22.93011 -21.29483 -20.89176 -20.26750 -18.74451 -18.27938 -17.36611 -17.30075 -17.25662 -16.76760 -16.23593 -15.83412 -15.49993 -15.32166 -15.15357 -14.70376 -14.65992 -14.25004 -14.08047 -14.02912 -13.82649 -13.61648 -13.25198 -13.23117 -13.20831 -13.04322 -12.94402 -12.78028 -12.66183 -12.53856 -12.46369 -12.30595 -12.17517 -11.90152 -11.70402 -11.43801 -11.19928 -11.08608 -10.95895 -10.80394 -10.19531 -9.55908 -8.82365 -7.82934 -5.13334 0.13133 0.65243 1.08231 1.44185 1.45675 1.54844 2.01073 2.25327 2.50447 3.16282 3.28578 3.36225 3.46169 3.53517 3.70198 3.80516 3.96782 4.00096 4.10619 4.26538 4.34977 4.42003 4.46199 4.59940 4.61752 4.62111 4.67750 4.69262 4.71730 4.74409 4.75925 4.85381 4.92781 5.03495 5.04468 5.10077 5.13979 5.16829 5.22726 5.38744 5.53488 5.60776 5.66386 5.76726 6.00944 6.37537 6.88187 7.00994 7.13845 7.70890 8.67058 9.35538 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.014430 B = 0.003917 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.919083 B = 7146.833281 C = 8400.791260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.130 3.870 3 C -0.133 4.133 4 C 0.597 3.403 5 O -0.559 6.559 6 N -0.593 5.593 7 C 0.105 3.895 8 C 0.128 3.872 9 C 0.130 3.870 10 H 0.029 0.971 11 C -0.128 4.128 12 C 0.152 3.848 13 N -0.626 5.626 14 C -0.219 4.219 15 H 0.103 0.897 16 C -0.073 4.073 17 N -0.958 5.958 18 Si 0.958 3.042 19 H -0.262 1.262 20 H -0.292 1.292 21 H -0.301 1.301 22 N -0.223 5.223 23 N -0.092 5.092 24 N -0.346 5.346 25 C 0.131 3.869 26 C -0.158 4.158 27 C -0.160 4.160 28 H 0.100 0.900 29 H 0.113 0.887 30 H 0.098 0.902 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.046 0.954 34 H 0.086 0.914 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.042 0.958 39 H 0.008 0.992 40 H 0.243 0.757 41 H 0.144 0.856 42 H 0.054 0.946 43 H 0.114 0.886 44 H 0.060 0.940 45 H 0.054 0.946 46 H 0.053 0.947 47 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.691 -19.910 -12.613 26.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.009 4.009 3 C -0.272 4.272 4 C 0.385 3.615 5 O -0.438 6.438 6 N -0.323 5.323 7 C -0.038 4.038 8 C 0.005 3.995 9 C 0.023 3.977 10 H 0.047 0.953 11 C -0.167 4.167 12 C 0.027 3.973 13 N -0.352 5.352 14 C -0.347 4.347 15 H 0.121 0.879 16 C -0.265 4.265 17 N -0.608 5.608 18 Si 0.788 3.212 19 H -0.186 1.186 20 H -0.219 1.219 21 H -0.229 1.229 22 N -0.095 5.095 23 N -0.071 5.071 24 N -0.133 5.133 25 C 0.032 3.968 26 C -0.215 4.215 27 C -0.218 4.218 28 H 0.118 0.882 29 H 0.131 0.869 30 H 0.117 0.883 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.065 0.935 34 H 0.104 0.896 35 H 0.114 0.886 36 H 0.110 0.890 37 H 0.102 0.898 38 H 0.061 0.939 39 H 0.025 0.975 40 H 0.052 0.948 41 H 0.161 0.839 42 H 0.073 0.927 43 H 0.132 0.868 44 H 0.079 0.921 45 H 0.073 0.927 46 H 0.073 0.927 47 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -10.463 -20.253 -12.575 26.034 hybrid contribution 0.622 0.185 1.006 1.197 sum -9.841 -20.067 -11.569 25.167 Atomic orbital electron populations 1.20841 0.82245 1.06480 1.05496 1.22347 0.97493 0.85693 0.95377 1.21291 0.89723 0.95612 1.20624 1.16978 0.85149 0.83168 0.76233 1.90678 1.16146 1.83921 1.53102 1.47637 1.07342 1.06864 1.70428 1.21861 0.79389 1.01091 1.01444 1.21857 1.01188 0.80232 0.96270 1.22688 0.87438 0.95553 0.92056 0.95329 1.23548 0.99125 0.95464 0.98516 1.22134 0.90364 0.91985 0.92840 1.46618 1.05374 1.37772 1.45416 1.19940 0.85368 1.14064 1.15324 0.87943 1.25510 1.01704 1.00139 0.99133 1.70027 1.34783 1.29590 1.26432 0.85277 0.81003 0.77832 0.77097 1.18568 1.21889 1.22911 1.74829 1.19717 1.04489 1.10492 1.81818 0.98274 1.03209 1.23810 1.50982 1.05174 1.08502 1.48649 1.22204 1.02477 0.73097 0.98999 1.22154 1.01967 1.02535 0.94872 1.22169 1.01929 1.02537 0.95162 0.88196 0.86855 0.88323 0.90998 0.90520 0.93526 0.89574 0.88594 0.88958 0.89800 0.93916 0.97450 0.94807 0.83888 0.92658 0.86761 0.92076 0.92717 0.92746 0.86639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.52 9.46 71.24 0.67 -0.84 16 2 C 0.13 3.22 7.02 41.72 0.29 3.51 16 3 C -0.13 -4.39 6.76 40.82 0.28 -4.11 16 4 C 0.60 21.72 7.62 86.69 0.66 22.38 16 5 O -0.56 -20.67 14.33 -4.04 -0.06 -20.72 16 6 N -0.59 -22.12 2.89 -850.56 -2.45 -24.57 16 7 C 0.11 3.89 7.24 127.77 0.92 4.81 16 8 C 0.13 4.64 5.27 86.38 0.45 5.10 16 9 C 0.13 5.45 4.50 45.09 0.20 5.65 16 10 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 11 C -0.13 -4.79 7.86 31.25 0.25 -4.55 16 12 C 0.15 7.50 7.47 86.43 0.65 8.14 16 13 N -0.63 -32.39 3.59 -690.90 -2.48 -34.87 16 14 C -0.22 -12.20 10.26 84.03 0.86 -11.33 16 15 H 0.10 5.37 3.73 -2.91 -0.01 5.36 16 16 C -0.07 -4.25 5.50 84.86 0.47 -3.78 16 17 N -0.96 -59.60 11.45 21.65 0.25 -59.35 16 18 Si 0.96 47.27 29.55 68.60 2.03 49.29 16 19 H -0.26 -12.07 7.11 99.48 0.71 -11.36 16 20 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16 21 H -0.30 -15.16 7.11 99.48 0.71 -14.45 16 22 N -0.22 -7.72 8.91 -50.00 -0.45 -8.17 16 23 N -0.09 -2.79 13.67 37.02 0.51 -2.29 16 24 N -0.35 -7.68 3.28 -313.40 -1.03 -8.71 16 25 C 0.13 1.52 3.68 44.99 0.17 1.68 16 26 C -0.16 -1.47 9.47 71.98 0.68 -0.79 16 27 C -0.16 -1.79 9.47 71.98 0.68 -1.10 16 28 H 0.10 1.50 8.14 -2.38 -0.02 1.48 16 29 H 0.11 0.88 7.18 -2.39 -0.02 0.86 16 30 H 0.10 2.03 6.33 -2.39 -0.02 2.02 16 31 H 0.07 2.42 7.21 -2.39 -0.02 2.40 16 32 H 0.08 2.91 6.50 -2.39 -0.02 2.89 16 33 H 0.05 1.93 6.70 -2.39 -0.02 1.91 16 34 H 0.09 3.12 7.78 -2.39 -0.02 3.10 16 35 H 0.10 3.14 7.52 -2.38 -0.02 3.12 16 36 H 0.09 3.17 8.10 -2.39 -0.02 3.15 16 37 H 0.08 2.65 8.14 -2.38 -0.02 2.63 16 38 H 0.04 2.32 7.27 -2.39 -0.02 2.30 16 39 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 40 H 0.24 14.79 8.31 -92.70 -0.77 14.02 16 41 H 0.14 0.68 6.79 -2.39 -0.02 0.67 16 42 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.11 0.34 8.14 -2.39 -0.02 0.32 16 44 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 45 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 46 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 47 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 Total: -1.00 -77.23 375.43 4.53 -72.70 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: 0.97 Total: 11.91 kcal Atomic # 6 Polarization: 17.54 SS G_CDS: 7.23 Total: 24.77 kcal Atomic # 7 Polarization: -132.31 SS G_CDS: -5.65 Total: -137.96 kcal Atomic # 8 Polarization: -20.67 SS G_CDS: -0.06 Total: -20.72 kcal Atomic # 14 Polarization: 47.27 SS G_CDS: 2.03 Total: 49.29 kcal Total: -77.23 4.53 -72.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085896539.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.422 kcal (2) G-P(sol) polarization free energy of solvation -77.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds