Wall clock time and date at job start Fri Apr 10 2020 18:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53009 * 109.46900 * 2 1 4 4 C 1.52995 * 109.47261 * 240.00045 * 2 1 3 5 5 N 1.46501 * 109.46891 * 119.99649 * 2 1 3 6 6 C 1.34579 * 125.74483 * 75.00397 * 5 2 1 7 7 N 1.30865 * 107.62567 * 179.76958 * 6 5 2 8 8 C 1.34554 * 107.26792 * 0.38781 * 7 6 5 9 9 C 1.47866 * 126.04734 * 179.86552 * 8 7 6 10 10 O 1.21557 * 119.99871 * 179.69200 * 9 8 7 11 11 N 1.34777 * 120.00200 * 359.69829 * 9 8 7 12 12 C 1.46506 * 119.99873 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.47035 * 179.97438 * 12 11 9 14 14 H 1.09005 * 112.84820 * 314.66247 * 13 12 11 15 15 C 1.53781 * 113.61642 * 85.86004 * 13 12 11 16 16 C 1.53946 * 87.01926 * 139.95209 * 15 13 12 17 17 H 1.09003 * 113.66908 * 220.06802 * 16 15 13 18 18 N 1.46502 * 113.61583 * 89.19881 * 16 15 13 19 19 C 1.36938 * 119.99833 * 107.46332 * 18 16 15 20 20 H 1.08000 * 120.00441 * 0.02562 * 19 18 16 21 21 C 1.38815 * 120.00110 * 180.02562 * 19 18 16 22 22 N 1.31626 * 119.99585 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 120.00211 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47178 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47183 * 120.00007 * 23 21 19 26 26 H 1.48503 * 109.47417 * 239.99877 * 23 21 19 27 27 C 1.53776 * 113.61482 * 183.47098 * 13 12 11 28 28 N 1.28850 * 125.74870 * 255.02702 * 5 2 1 29 29 H 1.08996 * 109.47562 * 300.00527 * 1 2 3 30 30 H 1.09005 * 109.47029 * 60.00100 * 1 2 3 31 31 H 1.08996 * 109.47227 * 179.97438 * 1 2 3 32 32 H 1.08990 * 109.46764 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.46786 * 299.99685 * 3 2 1 34 34 H 1.09000 * 109.47012 * 60.00017 * 3 2 1 35 35 H 1.08996 * 109.47045 * 300.00167 * 4 2 1 36 36 H 1.09005 * 109.47217 * 59.99970 * 4 2 1 37 37 H 1.08999 * 109.47240 * 179.97438 * 4 2 1 38 38 H 1.08003 * 126.18858 * 0.04148 * 6 5 2 39 39 H 0.96999 * 120.00047 * 359.97438 * 11 9 8 40 40 H 1.09004 * 109.47073 * 299.99562 * 12 11 9 41 41 H 1.09000 * 109.47212 * 59.99645 * 12 11 9 42 42 H 1.08998 * 113.61494 * 254.53145 * 15 13 12 43 43 H 1.08997 * 113.61207 * 25.43133 * 15 13 12 44 44 H 0.97001 * 120.00339 * 287.47110 * 18 16 15 45 45 H 0.97007 * 119.99704 * 179.97438 * 22 21 19 46 46 H 1.09004 * 113.61347 * 334.56629 * 27 13 12 47 47 H 1.08993 * 113.61643 * 105.46595 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 2.0183 -0.6905 1.1962 6 6 2.0138 -2.0220 1.3923 7 7 2.5322 -2.2505 2.5719 8 6 2.8487 -1.0573 3.1072 9 6 3.4593 -0.8337 4.4352 10 8 3.7053 0.2967 4.8085 11 7 3.7433 -1.8832 5.2316 12 6 4.3488 -1.6616 6.5472 13 6 4.5658 -3.0075 7.2419 14 1 3.7010 -3.6669 7.1667 15 6 5.8933 -3.6873 6.8672 16 6 6.0102 -4.0937 8.3475 17 1 7.0218 -4.0119 8.7452 18 7 5.3807 -5.3806 8.6542 19 6 6.1575 -6.4776 8.9160 20 1 7.2341 -6.3940 8.8968 21 6 5.5611 -7.6970 9.2061 22 7 4.2490 -7.7990 9.2290 23 14 6.6206 -9.1932 9.5640 24 1 8.0544 -8.8169 9.4764 25 1 6.3235 -9.6949 10.9298 26 1 6.3261 -10.2574 8.5709 27 6 5.1215 -2.8809 8.6702 28 7 2.5239 -0.1254 2.2380 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6767 -1.7488 -1.2492 36 1 1.6767 -0.2074 -2.1392 37 1 3.1300 -0.7208 -1.2494 38 1 1.6523 -2.7674 0.6994 39 1 3.5468 -2.7852 4.9339 40 1 5.3070 -1.1565 6.4257 41 1 3.6862 -1.0432 7.1527 42 1 5.7749 -4.5326 6.1894 43 1 6.6653 -2.9891 6.5439 44 1 4.4138 -5.4556 8.6717 45 1 3.8322 -8.6513 9.4314 46 1 5.6821 -1.9618 8.8407 47 1 4.3810 -3.0762 9.4457 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086476853.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:42 Heat of formation + Delta-G solvation = 81.612738 kcal Electronic energy + Delta-G solvation = -26359.691809 eV Core-core repulsion = 22580.440534 eV Total energy + Delta-G solvation = -3779.251276 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.72881 -39.59363 -38.40155 -37.67968 -34.64748 -33.24144 -32.75465 -31.29675 -30.11110 -28.18402 -28.08935 -27.57849 -25.00820 -24.59726 -23.49005 -23.25095 -21.61115 -20.55757 -20.41084 -18.52699 -17.90827 -17.24370 -16.83703 -16.72705 -16.10526 -15.28691 -15.10437 -14.80155 -14.74138 -14.47970 -14.18397 -14.02756 -13.53753 -13.34088 -13.22407 -13.02484 -12.93068 -12.84523 -12.45424 -12.34124 -12.21654 -11.94959 -11.85849 -11.58894 -11.34757 -11.00691 -10.83485 -10.62742 -10.59533 -10.45239 -10.31672 -10.10242 -9.82082 -9.75375 -9.65576 -9.43271 -8.93721 -8.84572 -6.96101 -5.77552 -3.06273 1.25956 1.81651 1.93221 3.04592 3.36049 3.43808 3.49666 3.51858 3.74743 3.96382 4.01268 4.11866 4.41977 4.58690 4.62612 4.77319 4.89509 4.95432 5.01052 5.07818 5.12651 5.14317 5.16366 5.29464 5.30463 5.47307 5.49156 5.64639 5.68960 5.74722 5.81918 5.92012 6.00490 6.12393 6.16169 6.27123 6.28349 6.42876 6.45657 6.64528 6.81620 6.95368 7.10337 7.47355 7.72707 7.87860 8.21068 8.41706 9.52351 10.10541 10.44728 11.44956 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.020577 B = 0.002116 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.408324 B =13227.912108 C =14124.374145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.167 3.833 3 C -0.149 4.149 4 C -0.161 4.161 5 N -0.294 5.294 6 C 0.189 3.811 7 N -0.481 5.481 8 C 0.140 3.860 9 C 0.612 3.388 10 O -0.527 6.527 11 N -0.701 5.701 12 C 0.132 3.868 13 C -0.119 4.119 14 H 0.095 0.905 15 C -0.169 4.169 16 C 0.167 3.833 17 H 0.062 0.938 18 N -0.706 5.706 19 C -0.240 4.240 20 H 0.073 0.927 21 C -0.014 4.014 22 N -0.932 5.932 23 Si 0.908 3.092 24 H -0.280 1.280 25 H -0.292 1.292 26 H -0.292 1.292 27 C -0.147 4.147 28 N -0.248 5.248 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.088 0.912 37 H 0.070 0.930 38 H 0.222 0.778 39 H 0.412 0.588 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.068 0.932 44 H 0.385 0.615 45 H 0.255 0.745 46 H 0.077 0.923 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.078 17.035 -22.988 29.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.085 3.915 3 C -0.206 4.206 4 C -0.219 4.219 5 N -0.091 5.091 6 C -0.106 4.106 7 N -0.206 5.206 8 C -0.140 4.140 9 C 0.394 3.606 10 O -0.401 6.401 11 N -0.353 5.353 12 C 0.009 3.991 13 C -0.138 4.138 14 H 0.113 0.887 15 C -0.210 4.210 16 C 0.055 3.945 17 H 0.080 0.920 18 N -0.344 5.344 19 C -0.371 4.371 20 H 0.091 0.909 21 C -0.210 4.210 22 N -0.580 5.580 23 Si 0.739 3.261 24 H -0.205 1.205 25 H -0.219 1.219 26 H -0.219 1.219 27 C -0.187 4.187 28 N -0.087 5.087 29 H 0.088 0.912 30 H 0.104 0.896 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.107 0.893 37 H 0.089 0.911 38 H 0.238 0.762 39 H 0.248 0.752 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.219 0.781 45 H 0.065 0.935 46 H 0.096 0.904 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.586 18.067 -22.344 29.719 hybrid contribution -0.187 -1.549 -0.413 1.614 sum -7.773 16.518 -22.757 29.175 Atomic orbital electron populations 1.22269 0.91682 1.03722 1.04157 1.21172 0.95350 0.94354 0.80664 1.21999 1.02615 0.92234 1.03789 1.22266 1.02761 1.01220 0.95619 1.47797 1.41529 1.06295 1.13445 1.26331 1.01568 0.86405 0.96320 1.71320 1.16262 1.25861 1.07122 1.23802 1.06406 0.85671 0.98108 1.16298 0.78208 0.85045 0.81061 1.90812 1.53150 1.22584 1.73511 1.45774 1.62101 1.09574 1.17869 1.21573 0.97897 0.98083 0.81497 1.22719 0.99292 0.94740 0.97072 0.88721 1.23915 0.95344 0.99795 1.01909 1.21092 0.95418 0.85797 0.92198 0.91961 1.42182 1.06105 1.03886 1.82256 1.19341 0.90507 0.87765 1.39515 0.90942 1.24769 0.95710 0.97917 1.02620 1.69679 1.07736 1.24828 1.55786 0.86097 0.79357 0.83129 0.77489 1.20513 1.21888 1.21873 1.23439 1.00304 0.99845 0.95075 1.74278 1.13529 1.25458 0.95420 0.91209 0.89554 0.91257 0.91246 0.90289 0.90513 0.91032 0.89288 0.91094 0.76199 0.75155 0.91233 0.91468 0.91406 0.91389 0.78085 0.93529 0.90412 0.91274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.61 8.72 37.16 0.32 -0.29 16 2 C 0.17 0.89 1.23 -131.82 -0.16 0.73 16 3 C -0.15 -0.85 8.04 37.16 0.30 -0.55 16 4 C -0.16 -0.47 8.28 37.16 0.31 -0.16 16 5 N -0.29 -2.73 3.17 -49.84 -0.16 -2.89 16 6 C 0.19 1.71 11.71 -90.49 -1.06 0.65 16 7 N -0.48 -6.19 11.09 -12.37 -0.14 -6.33 16 8 C 0.14 2.06 7.96 -156.35 -1.24 0.81 16 9 C 0.61 9.91 7.83 -12.32 -0.10 9.81 16 10 O -0.53 -9.94 17.09 5.32 0.09 -9.84 16 11 N -0.70 -10.24 5.55 -61.24 -0.34 -10.58 16 12 C 0.13 1.91 5.50 -4.04 -0.02 1.89 16 13 C -0.12 -1.87 3.63 -89.81 -0.33 -2.20 16 14 H 0.09 1.60 8.14 -51.93 -0.42 1.17 16 15 C -0.17 -2.91 7.44 -25.83 -0.19 -3.10 16 16 C 0.17 3.31 4.56 -67.03 -0.31 3.01 16 17 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 18 N -0.71 -17.59 5.31 -52.55 -0.28 -17.87 16 19 C -0.24 -6.66 9.97 -15.06 -0.15 -6.81 16 20 H 0.07 1.96 7.83 -52.49 -0.41 1.54 16 21 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 22 N -0.93 -28.06 13.06 55.49 0.72 -27.34 16 23 Si 0.91 22.39 29.55 -169.99 -5.02 17.36 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 26 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 27 C -0.15 -2.40 7.39 -25.92 -0.19 -2.59 16 28 N -0.25 -3.33 11.09 32.07 0.36 -2.97 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.09 0.15 8.14 -51.93 -0.42 -0.28 16 31 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 34 H 0.08 0.57 8.02 -51.93 -0.42 0.16 16 35 H 0.07 0.13 7.34 -51.93 -0.38 -0.25 16 36 H 0.09 0.09 8.14 -51.93 -0.42 -0.33 16 37 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.22 0.96 7.53 -52.48 -0.39 0.56 16 39 H 0.41 5.77 8.18 -40.82 -0.33 5.43 16 40 H 0.07 1.01 7.88 -51.93 -0.41 0.60 16 41 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 42 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 43 H 0.07 1.06 7.92 -51.93 -0.41 0.64 16 44 H 0.39 10.15 7.90 -40.82 -0.32 9.83 16 45 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 46 H 0.08 1.10 8.10 -51.93 -0.42 0.68 16 47 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 391.67 15.07 5.90 5.90 Total: -1.00 -34.96 391.67 -9.49 -44.45 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: -7.71 Total: 9.40 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: -2.92 Total: 0.71 kcal Atomic # 7 Polarization: -68.15 SS G_CDS: 0.17 Total: -67.98 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.09 Total: -9.84 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.96 -9.49 -44.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086476853.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.062 kcal (2) G-P(sol) polarization free energy of solvation -34.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds