Wall clock time and date at job start Fri Apr 10 2020 18:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46496 * 109.47367 * 2 1 4 4 N 1.28518 * 124.44526 * 89.97312 * 3 2 1 5 5 C 1.31132 * 109.06197 * 180.02562 * 4 3 2 6 6 C 1.50692 * 127.11593 * 179.97438 * 5 4 3 7 7 C 1.40931 * 105.77550 * 359.97438 * 5 4 3 8 8 C 1.47796 * 127.23794 * 179.97438 * 7 5 4 9 9 O 1.21563 * 120.00363 * 0.02562 * 8 7 5 10 10 N 1.34775 * 119.99866 * 180.02562 * 8 7 5 11 11 C 1.46503 * 119.99907 * 179.97438 * 10 8 7 12 12 C 1.53001 * 109.47012 * 179.97438 * 11 10 8 13 13 H 1.09000 * 110.82181 * 303.11988 * 12 11 10 14 14 C 1.54887 * 110.75563 * 66.46010 * 12 11 10 15 15 C 1.54266 * 104.19888 * 156.25362 * 14 12 11 16 16 C 1.53872 * 106.59640 * 336.38805 * 15 14 12 17 17 H 1.09002 * 110.03208 * 119.28196 * 16 15 14 18 18 N 1.46499 * 110.03050 * 240.66305 * 16 15 14 19 19 C 1.36937 * 120.00323 * 273.54733 * 18 16 15 20 20 H 1.08002 * 119.99796 * 0.02562 * 19 18 16 21 21 C 1.38812 * 119.99934 * 180.02562 * 19 18 16 22 22 N 1.31625 * 119.99719 * 180.02562 * 21 19 18 23 23 Si 1.86796 * 120.00098 * 359.97438 * 21 19 18 24 24 H 1.48495 * 109.47061 * 90.00321 * 23 21 19 25 25 H 1.48496 * 109.47059 * 210.00186 * 23 21 19 26 26 H 1.48504 * 109.47107 * 330.00295 * 23 21 19 27 27 C 1.54266 * 106.60044 * 359.97438 * 16 15 14 28 28 N 1.28589 * 124.44201 * 270.31408 * 3 2 1 29 29 H 1.09003 * 109.46940 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46977 * 299.99964 * 1 2 3 31 31 H 1.08995 * 109.47038 * 60.00162 * 1 2 3 32 32 H 1.08994 * 109.47143 * 239.99705 * 2 1 3 33 33 H 1.09010 * 109.47430 * 120.00044 * 2 1 3 34 34 H 1.08997 * 109.47324 * 270.02378 * 6 5 4 35 35 H 1.09006 * 109.47236 * 30.02135 * 6 5 4 36 36 H 1.09003 * 109.47664 * 150.02171 * 6 5 4 37 37 H 0.97000 * 120.00207 * 0.02562 * 10 8 7 38 38 H 1.09007 * 109.47076 * 60.00423 * 11 10 8 39 39 H 1.08990 * 109.47305 * 300.00446 * 11 10 8 40 40 H 1.09001 * 110.48816 * 37.57288 * 14 12 11 41 41 H 1.09004 * 110.48531 * 274.93503 * 14 12 11 42 42 H 1.09003 * 110.03179 * 95.67576 * 15 14 12 43 43 H 1.09003 * 110.02980 * 217.05505 * 15 14 12 44 44 H 0.97005 * 119.99970 * 93.55194 * 18 16 15 45 45 H 0.96998 * 119.99668 * 180.02562 * 22 21 19 46 46 H 1.09002 * 110.48438 * 142.28717 * 27 16 15 47 47 H 1.08998 * 110.48431 * 264.79545 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2602 2.0667 1.0598 5 6 2.6814 3.2588 0.7120 6 6 3.0788 4.3863 1.6294 7 6 2.6854 3.2676 -0.6973 8 6 3.0792 4.3829 -1.5836 9 8 3.4510 5.4369 -1.1056 10 7 3.0261 4.2312 -2.9217 11 6 3.4160 5.3369 -3.8002 12 6 3.2650 4.9056 -5.2604 13 1 3.8552 4.0119 -5.4634 14 6 1.7750 4.6711 -5.6123 15 6 1.7139 4.8566 -7.1426 16 6 2.9156 5.7374 -7.5269 17 1 3.5711 5.1973 -8.2100 18 7 2.4492 6.9765 -8.1541 19 6 2.2044 7.0122 -9.5009 20 1 2.3546 6.1268 -10.1007 21 6 1.7630 8.1865 -10.0952 22 7 1.5272 8.2207 -11.3897 23 14 1.5024 9.7178 -9.0576 24 1 2.7604 10.5056 -9.0133 25 1 0.4224 10.5430 -9.6555 26 1 1.1174 9.3220 -7.6790 27 6 3.6646 6.0570 -6.2167 28 7 2.2553 2.0688 -1.0605 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8934 -0.5139 0.8900 34 1 2.2055 5.0000 1.8502 35 1 3.4787 3.9764 2.5568 36 1 3.8397 4.9981 1.1447 37 1 2.7291 3.3902 -3.3031 38 1 4.4544 5.6059 -3.6067 39 1 2.7757 6.1975 -3.6071 40 1 1.1447 5.4073 -5.1133 41 1 1.4728 3.6603 -5.3381 42 1 1.7862 3.8889 -7.6391 43 1 0.7833 5.3507 -7.4219 44 1 2.3140 7.7718 -7.6153 45 1 1.2191 9.0413 -11.8050 46 1 4.7418 6.0574 -6.3835 47 1 3.3411 7.0181 -5.8171 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086889997.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:50 Heat of formation + Delta-G solvation = 68.437338 kcal Electronic energy + Delta-G solvation = -26539.654748 eV Core-core repulsion = 22759.832144 eV Total energy + Delta-G solvation = -3779.822604 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.00712 -39.76767 -38.20224 -35.57285 -35.09485 -33.63909 -33.07598 -31.80515 -31.01087 -29.31084 -28.35226 -27.58655 -25.75033 -24.10627 -22.86640 -22.68702 -21.43069 -20.80182 -20.08333 -19.26968 -18.08560 -17.52833 -17.39104 -16.89956 -16.19220 -15.56241 -15.13970 -15.03557 -14.70343 -14.37132 -14.24402 -13.86883 -13.77951 -13.36634 -13.20516 -12.98993 -12.93550 -12.70135 -12.65896 -12.35436 -12.03351 -11.98920 -11.81360 -11.48384 -11.33584 -10.88275 -10.82155 -10.64253 -10.62318 -10.53026 -10.42714 -10.31207 -10.20875 -9.83654 -9.58938 -9.56703 -9.17159 -8.89645 -7.23734 -5.75508 -3.10588 0.99652 1.59536 1.72720 2.90094 3.03795 3.39532 3.42781 3.47320 3.53715 4.22419 4.22997 4.40858 4.49589 4.60702 4.60975 4.76320 4.83881 4.94878 4.97910 5.05459 5.15091 5.38663 5.39743 5.42307 5.43350 5.50773 5.60550 5.64104 5.64983 5.67527 5.86844 5.94125 5.99123 6.00206 6.08347 6.18964 6.22481 6.27472 6.30174 6.53236 6.62907 6.81789 7.05217 7.26746 7.79716 7.97245 8.02386 8.44301 9.23216 9.96047 10.15921 11.42935 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.021109 B = 0.002266 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.135541 B =12353.713418 C =13078.426514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.133 3.867 3 N -0.140 5.140 4 N -0.293 5.293 5 C 0.061 3.939 6 C -0.069 4.069 7 C -0.048 4.048 8 C 0.607 3.393 9 O -0.526 6.526 10 N -0.710 5.710 11 C 0.127 3.873 12 C -0.105 4.105 13 H 0.082 0.918 14 C -0.116 4.116 15 C -0.145 4.145 16 C 0.180 3.820 17 H 0.058 0.942 18 N -0.747 5.747 19 C -0.242 4.242 20 H 0.090 0.910 21 C 0.003 3.997 22 N -0.935 5.935 23 Si 0.884 3.116 24 H -0.284 1.284 25 H -0.292 1.292 26 H -0.277 1.277 27 C -0.121 4.121 28 N -0.248 5.248 29 H 0.088 0.912 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.112 0.888 33 H 0.111 0.889 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.096 0.904 37 H 0.407 0.593 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.062 0.938 41 H 0.055 0.945 42 H 0.052 0.948 43 H 0.072 0.928 44 H 0.361 0.639 45 H 0.259 0.741 46 H 0.067 0.933 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.415 -17.652 27.063 32.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.014 3.986 3 N -0.043 5.043 4 N -0.134 5.134 5 C -0.102 4.102 6 C -0.128 4.128 7 C -0.211 4.211 8 C 0.390 3.610 9 O -0.401 6.401 10 N -0.361 5.361 11 C 0.004 3.996 12 C -0.125 4.125 13 H 0.100 0.900 14 C -0.154 4.154 15 C -0.186 4.186 16 C 0.070 3.930 17 H 0.076 0.924 18 N -0.390 5.390 19 C -0.372 4.372 20 H 0.107 0.893 21 C -0.193 4.193 22 N -0.583 5.583 23 Si 0.714 3.286 24 H -0.211 1.211 25 H -0.218 1.218 26 H -0.203 1.203 27 C -0.160 4.160 28 N -0.096 5.096 29 H 0.107 0.893 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.130 0.870 33 H 0.130 0.870 34 H 0.100 0.900 35 H 0.093 0.907 36 H 0.115 0.885 37 H 0.242 0.758 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.081 0.919 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.091 0.909 44 H 0.194 0.806 45 H 0.069 0.931 46 H 0.085 0.915 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.214 -18.206 27.100 32.671 hybrid contribution -0.280 1.356 0.338 1.426 sum 0.934 -16.850 27.439 32.213 Atomic orbital electron populations 1.22202 0.92769 1.04180 1.03907 1.22121 0.96321 0.73947 1.06178 1.48126 1.43732 1.13313 0.99124 1.73951 1.18814 1.05344 1.15309 1.23296 1.00438 0.93835 0.92667 1.20243 1.02958 0.92760 0.96815 1.22953 1.09846 0.93842 0.94437 1.16602 0.77845 0.84915 0.81609 1.90798 1.47411 1.26604 1.75293 1.45874 1.66984 1.18113 1.05132 1.21531 1.00845 0.88863 0.88327 1.22362 0.98011 0.99730 0.92360 0.89977 1.22412 0.94870 1.00473 0.97665 1.22941 1.02005 1.00133 0.93488 1.20792 0.92543 0.87949 0.91675 0.92430 1.42905 1.80988 1.08486 1.06571 1.19092 1.37345 0.98098 0.82672 0.89261 1.24684 1.01526 0.97565 0.95524 1.69707 1.52326 1.27326 1.08938 0.86552 0.77741 0.84344 0.79920 1.21086 1.21830 1.20274 1.22640 1.00417 0.97398 0.95530 1.74324 1.14856 1.04420 1.16034 0.89295 0.91327 0.91172 0.86980 0.87043 0.90029 0.90671 0.88529 0.75816 0.91075 0.90894 0.91886 0.92649 0.92898 0.90887 0.80630 0.93113 0.91454 0.91282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.67 10.24 37.16 0.38 -0.29 16 2 C 0.13 0.61 7.24 -4.04 -0.03 0.58 16 3 N -0.14 -1.29 3.94 -10.61 -0.04 -1.33 16 4 N -0.29 -3.10 12.01 33.92 0.41 -2.69 16 5 C 0.06 0.68 7.39 -81.88 -0.61 0.08 16 6 C -0.07 -0.61 10.00 36.00 0.36 -0.25 16 7 C -0.05 -0.57 7.21 -82.68 -0.60 -1.16 16 8 C 0.61 7.71 7.83 -12.35 -0.10 7.61 16 9 O -0.53 -7.84 15.20 5.31 0.08 -7.76 16 10 N -0.71 -7.86 5.40 -61.26 -0.33 -8.19 16 11 C 0.13 1.47 5.11 -4.04 -0.02 1.45 16 12 C -0.11 -1.25 2.97 -88.61 -0.26 -1.51 16 13 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 14 C -0.12 -1.51 5.97 -25.07 -0.15 -1.66 16 15 C -0.15 -2.41 6.59 -25.61 -0.17 -2.58 16 16 C 0.18 3.33 3.55 -66.81 -0.24 3.09 16 17 H 0.06 1.11 8.09 -51.93 -0.42 0.69 16 18 N -0.75 -17.42 4.84 -52.34 -0.25 -17.67 16 19 C -0.24 -6.78 10.44 -15.06 -0.16 -6.94 16 20 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 21 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 22 N -0.94 -29.43 13.97 55.49 0.78 -28.65 16 23 Si 0.88 22.22 27.74 -169.99 -4.71 17.51 16 24 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 26 H -0.28 -6.55 6.52 56.52 0.37 -6.19 16 27 C -0.12 -1.77 5.97 -25.06 -0.15 -1.92 16 28 N -0.25 -2.65 11.84 33.42 0.40 -2.25 16 29 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.11 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.11 0.31 8.14 -51.92 -0.42 -0.11 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.10 0.93 6.77 -51.93 -0.35 0.58 16 37 H 0.41 3.95 8.10 -40.82 -0.33 3.62 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.07 0.92 8.10 -51.93 -0.42 0.50 16 40 H 0.06 0.86 8.01 -51.93 -0.42 0.45 16 41 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.07 1.40 7.92 -51.93 -0.41 0.99 16 44 H 0.36 8.31 5.40 -40.82 -0.22 8.09 16 45 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 46 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.07 1.05 7.64 -51.93 -0.40 0.65 16 LS Contribution 385.77 15.07 5.81 5.81 Total: -1.00 -34.44 385.77 -7.33 -41.77 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -7.63 Total: 6.99 kcal Atomic # 6 Polarization: -1.70 SS G_CDS: -1.83 Total: -3.52 kcal Atomic # 7 Polarization: -61.74 SS G_CDS: 0.95 Total: -60.79 kcal Atomic # 8 Polarization: -7.84 SS G_CDS: 0.08 Total: -7.76 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.71 Total: 17.51 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.44 -7.33 -41.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086889997.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.203 kcal (2) G-P(sol) polarization free energy of solvation -34.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds