Wall clock time and date at job start Fri Apr 10 2020 18:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.35588 * 2 1 4 4 C 1.54839 * 109.35761 * 119.72320 * 2 1 3 5 5 C 1.50134 * 110.81490 * 81.33871 * 4 2 1 6 6 H 1.08996 * 110.24978 * 338.56527 * 5 4 2 7 7 N 1.46503 * 110.24870 * 216.65487 * 5 4 2 8 8 C 1.34773 * 119.99780 * 154.99953 * 7 5 4 9 9 O 1.21281 * 120.00237 * 0.02562 * 8 7 5 10 10 C 1.50703 * 120.00016 * 179.97438 * 8 7 5 11 11 N 1.46492 * 109.46924 * 179.97438 * 10 8 7 12 12 C 1.34440 * 126.81945 * 125.00294 * 11 10 8 13 13 N 1.30826 * 108.07630 * 179.97438 * 12 11 10 14 14 C 1.33244 * 109.83133 * 0.02562 * 13 12 11 15 15 N 1.30707 * 108.94543 * 0.02562 * 14 13 12 16 16 C 1.52521 * 105.41300 * 97.68175 * 5 4 2 17 17 C 1.46241 * 114.28062 * 270.59413 * 16 5 4 18 18 N 1.50170 * 107.53139 * 58.40876 * 17 16 5 19 19 C 1.36928 * 120.53951 * 109.61346 * 18 17 16 20 20 H 1.07994 * 120.00465 * 156.64707 * 19 18 17 21 21 C 1.38826 * 119.99986 * 336.65336 * 19 18 17 22 22 N 1.31619 * 119.99624 * 340.44117 * 21 19 18 23 23 Si 1.86792 * 120.00047 * 160.44577 * 21 19 18 24 24 H 1.48497 * 109.47580 * 59.99856 * 23 21 19 25 25 H 1.48502 * 109.47007 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47147 * 299.99737 * 23 21 19 27 27 C 1.43432 * 118.92487 * 289.59093 * 18 17 16 28 28 H 1.09006 * 109.47454 * 300.27668 * 1 2 3 29 29 H 1.09004 * 109.46853 * 60.27305 * 1 2 3 30 30 H 1.08992 * 109.47561 * 180.27534 * 1 2 3 31 31 H 1.09003 * 109.46625 * 179.72517 * 3 2 1 32 32 H 1.08999 * 109.46894 * 299.72199 * 3 2 1 33 33 H 1.09001 * 109.47485 * 59.72680 * 3 2 1 34 34 H 1.08999 * 109.21334 * 320.99275 * 4 2 1 35 35 H 1.08997 * 109.17458 * 201.65565 * 4 2 1 36 36 H 0.96997 * 120.00117 * 334.99776 * 7 5 4 37 37 H 1.09002 * 109.46724 * 60.00170 * 10 8 7 38 38 H 1.08996 * 109.46936 * 300.00547 * 10 8 7 39 39 H 1.07996 * 125.95817 * 0.02562 * 12 11 10 40 40 H 1.08005 * 125.53059 * 179.73382 * 14 13 12 41 41 H 1.09001 * 108.52536 * 31.83508 * 16 5 4 42 42 H 1.09003 * 108.52238 * 149.34928 * 16 5 4 43 43 H 1.08995 * 109.84160 * 298.90337 * 17 16 5 44 44 H 1.09001 * 109.84792 * 177.91537 * 17 16 5 45 45 H 0.96996 * 119.99987 * 180.02562 * 22 21 19 46 46 H 1.08998 * 108.16047 * 329.85052 * 27 18 17 47 47 H 1.09003 * 108.00191 * 213.15724 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0371 1.4436 0.0000 4 6 2.0433 -0.7243 1.2687 5 6 2.0207 -2.2134 1.0787 6 1 1.3235 -2.4820 0.2851 7 7 1.6451 -2.8784 2.3290 8 6 1.0802 -4.1016 2.2982 9 8 0.8833 -4.6521 1.2356 10 6 0.6943 -4.7860 3.5843 11 7 0.1045 -6.0928 3.2840 12 6 0.4991 -7.2846 3.7650 13 7 -0.2809 -8.2050 3.2592 14 6 -1.1811 -7.6421 2.4540 15 7 -0.9850 -6.3500 2.4359 16 6 3.4445 -2.5935 0.6857 17 6 3.6999 -2.5615 -0.7539 18 7 3.4056 -1.1696 -1.2346 19 6 4.4210 -0.3417 -1.6325 20 1 4.2179 0.4759 -2.3082 21 6 5.7118 -0.5532 -1.1672 22 7 5.9106 -1.2694 -0.0810 23 14 7.1662 0.1786 -2.0827 24 1 7.0356 1.6574 -2.1182 25 1 8.4254 -0.1900 -1.3870 26 1 7.1941 -0.3493 -3.4704 27 6 2.0435 -0.7217 -1.2708 28 1 -0.3634 0.5181 0.8875 29 1 -0.3633 0.5096 -0.8925 30 1 -0.3634 -1.0275 0.0049 31 1 3.1272 1.4457 0.0049 32 1 1.6768 1.9552 -0.8925 33 1 1.6688 1.9581 0.8875 34 1 1.4076 -0.4609 2.1140 35 1 3.0647 -0.4046 1.4749 36 1 1.8029 -2.4383 3.1788 37 1 -0.0327 -4.1735 4.1177 38 1 1.5806 -4.9206 4.2043 39 1 1.3168 -7.4526 4.4502 40 1 -1.9455 -8.1687 1.9018 41 1 4.1342 -1.9058 1.1751 42 1 3.6476 -3.6002 1.0511 43 1 3.0489 -3.2736 -1.2610 44 1 4.7434 -2.8079 -0.9502 45 1 6.8124 -1.4170 0.2443 46 1 1.4059 -1.5872 -1.4510 47 1 1.9351 -0.0409 -2.1152 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089556419.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:08 Heat of formation + Delta-G solvation = 87.522394 kcal Electronic energy + Delta-G solvation = -28575.278874 eV Core-core repulsion = 24796.283860 eV Total energy + Delta-G solvation = -3778.995014 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.12226 -39.87468 -38.24947 -34.73637 -34.42433 -34.06205 -31.62449 -31.24779 -30.69391 -28.36432 -27.22710 -26.69542 -25.53102 -23.53831 -22.59903 -22.05136 -21.54003 -20.37396 -19.98266 -18.13715 -17.50106 -17.08884 -16.69513 -15.91975 -15.60876 -15.06194 -14.88726 -14.87151 -14.21188 -14.17140 -13.73997 -13.64630 -13.51270 -13.20814 -12.98896 -12.53027 -12.36252 -11.97736 -11.83772 -11.69335 -11.47580 -11.26306 -10.91591 -10.86473 -10.71767 -10.62724 -10.35095 -10.18683 -10.09549 -10.06407 -9.97961 -9.81839 -9.72018 -9.52052 -9.42265 -9.26893 -8.71564 -8.35490 -6.72464 -5.81370 -3.19189 1.54289 2.09098 2.65374 2.92335 3.25003 3.36788 3.42983 3.45845 4.20689 4.31483 4.49224 4.63539 4.72758 4.79215 5.17345 5.20532 5.36350 5.45888 5.49206 5.58275 5.83427 5.96203 6.04024 6.10359 6.12820 6.25234 6.28332 6.34449 6.36337 6.44115 6.53849 6.56790 6.62802 6.69499 6.77359 6.87223 6.94686 7.00669 7.04823 7.19806 7.23230 7.54062 7.68526 7.71520 7.91585 7.99901 8.33998 8.40945 9.17164 9.85283 10.38929 11.25836 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.017661 B = 0.003456 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.989236 B = 8099.925156 C = 8986.402700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.089 4.089 3 C -0.129 4.129 4 C -0.101 4.101 5 C 0.147 3.853 6 H 0.086 0.914 7 N -0.716 5.716 8 C 0.496 3.504 9 O -0.511 6.511 10 C 0.109 3.891 11 N -0.366 5.366 12 C 0.253 3.747 13 N -0.547 5.547 14 C 0.189 3.811 15 N -0.287 5.287 16 C -0.131 4.131 17 C 0.168 3.832 18 N -0.585 5.585 19 C -0.243 4.243 20 H 0.066 0.934 21 C 0.002 3.998 22 N -0.901 5.901 23 Si 0.898 3.102 24 H -0.285 1.285 25 H -0.292 1.292 26 H -0.286 1.286 27 C 0.166 3.834 28 H 0.043 0.957 29 H 0.048 0.952 30 H 0.047 0.953 31 H 0.072 0.928 32 H 0.042 0.958 33 H 0.033 0.967 34 H 0.041 0.959 35 H 0.082 0.918 36 H 0.395 0.605 37 H 0.116 0.884 38 H 0.129 0.871 39 H 0.218 0.782 40 H 0.215 0.785 41 H 0.103 0.897 42 H 0.026 0.974 43 H 0.008 0.992 44 H 0.091 0.909 45 H 0.252 0.748 46 H 0.028 0.972 47 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.841 -4.075 11.223 15.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.093 4.093 3 C -0.186 4.186 4 C -0.139 4.139 5 C 0.044 3.956 6 H 0.104 0.896 7 N -0.367 5.367 8 C 0.278 3.722 9 O -0.384 6.384 10 C -0.018 4.018 11 N -0.158 5.158 12 C -0.044 4.044 13 N -0.274 5.274 14 C -0.114 4.114 15 N -0.113 5.113 16 C -0.170 4.170 17 C 0.044 3.956 18 N -0.305 5.305 19 C -0.372 4.372 20 H 0.084 0.916 21 C -0.195 4.195 22 N -0.547 5.547 23 Si 0.728 3.272 24 H -0.211 1.211 25 H -0.218 1.218 26 H -0.213 1.213 27 C 0.036 3.964 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.091 0.909 32 H 0.061 0.939 33 H 0.052 0.948 34 H 0.060 0.940 35 H 0.100 0.900 36 H 0.228 0.772 37 H 0.134 0.866 38 H 0.147 0.853 39 H 0.235 0.765 40 H 0.232 0.768 41 H 0.121 0.879 42 H 0.045 0.955 43 H 0.026 0.974 44 H 0.109 0.891 45 H 0.062 0.938 46 H 0.046 0.954 47 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -10.173 -4.294 10.134 14.988 hybrid contribution 1.174 0.760 0.340 1.439 sum -8.999 -3.534 10.474 14.254 Atomic orbital electron populations 1.21846 0.96167 1.00779 1.00536 1.21926 0.93201 0.96183 0.97964 1.21746 1.02857 0.94778 0.99201 1.21782 1.02261 0.93073 0.96741 1.20543 0.98370 0.92164 0.84496 0.89581 1.46194 1.62088 1.17696 1.10737 1.20268 0.78880 0.82446 0.90595 1.90808 1.52656 1.64044 1.30935 1.21646 1.00439 0.82336 0.97374 1.49974 1.24323 1.07212 1.34261 1.26050 0.99334 0.80696 0.98327 1.70507 1.08559 1.32706 1.15629 1.26001 0.98903 0.88946 0.97580 1.78199 1.03601 1.17773 1.11776 1.21330 0.94221 1.00451 1.01031 1.20092 1.00724 0.83871 0.90894 1.44237 1.01066 1.09935 1.75279 1.19140 0.87342 1.10336 1.20393 0.91589 1.24855 0.98139 1.00312 0.96228 1.69939 1.20228 1.43862 1.20628 0.86438 0.82343 0.78739 0.79662 1.21136 1.21827 1.21257 1.20516 0.86879 0.95603 0.93353 0.93755 0.93262 0.93380 0.90898 0.93886 0.94831 0.94038 0.89970 0.77198 0.86617 0.85324 0.76542 0.76830 0.87899 0.95508 0.97426 0.89080 0.93809 0.95355 0.94825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 8.21 37.16 0.30 -1.72 16 2 C -0.09 -1.53 0.76 -152.53 -0.12 -1.65 16 3 C -0.13 -2.22 8.28 37.16 0.31 -1.92 16 4 C -0.10 -1.70 4.15 -27.19 -0.11 -1.81 16 5 C 0.15 2.56 2.16 -69.60 -0.15 2.41 16 6 H 0.09 1.73 5.16 -51.93 -0.27 1.46 16 7 N -0.72 -9.56 4.95 -55.44 -0.27 -9.84 16 8 C 0.50 7.00 7.86 -10.99 -0.09 6.92 16 9 O -0.51 -9.98 15.39 5.56 0.09 -9.89 16 10 C 0.11 0.97 7.03 -5.20 -0.04 0.94 16 11 N -0.37 -4.37 3.41 -63.82 -0.22 -4.59 16 12 C 0.25 2.61 12.63 -90.65 -1.14 1.46 16 13 N -0.55 -6.96 11.19 -15.83 -0.18 -7.14 16 14 C 0.19 2.42 13.03 -91.82 -1.20 1.22 16 15 N -0.29 -4.23 11.82 29.29 0.35 -3.89 16 16 C -0.13 -2.70 4.74 -30.19 -0.14 -2.84 16 17 C 0.17 3.92 5.25 -5.20 -0.03 3.90 16 18 N -0.58 -13.72 2.60 -175.08 -0.46 -14.18 16 19 C -0.24 -6.20 8.94 -15.06 -0.13 -6.34 16 20 H 0.07 1.70 7.88 -52.49 -0.41 1.29 16 21 C 0.00 0.06 4.91 -17.43 -0.09 -0.02 16 22 N -0.90 -23.65 9.43 55.49 0.52 -23.13 16 23 Si 0.90 20.92 29.60 -169.99 -5.03 15.89 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 26 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 27 C 0.17 3.38 4.00 -4.66 -0.02 3.36 16 28 H 0.04 0.60 8.13 -51.93 -0.42 0.17 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.74 7.57 -51.93 -0.39 0.35 16 31 H 0.07 1.48 7.45 -51.93 -0.39 1.10 16 32 H 0.04 0.71 8.11 -51.93 -0.42 0.28 16 33 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.04 0.60 7.68 -51.93 -0.40 0.20 16 35 H 0.08 1.63 6.65 -51.93 -0.35 1.29 16 36 H 0.39 3.86 8.53 -40.82 -0.35 3.51 16 37 H 0.12 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.13 0.61 8.09 -51.93 -0.42 0.19 16 39 H 0.22 1.13 8.06 -52.49 -0.42 0.71 16 40 H 0.22 1.97 8.06 -52.48 -0.42 1.55 16 41 H 0.10 2.36 5.29 -51.93 -0.27 2.09 16 42 H 0.03 0.55 8.02 -51.93 -0.42 0.14 16 43 H 0.01 0.18 8.12 -51.93 -0.42 -0.24 16 44 H 0.09 2.37 6.05 -51.93 -0.31 2.05 16 45 H 0.25 6.57 8.31 -40.82 -0.34 6.23 16 46 H 0.03 0.58 6.69 -51.93 -0.35 0.23 16 47 H 0.03 0.70 7.81 -51.93 -0.41 0.29 16 LS Contribution 367.74 15.07 5.54 5.54 Total: -1.00 -33.28 367.74 -9.55 -42.83 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -7.25 Total: 4.49 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: -2.64 Total: 3.91 kcal Atomic # 7 Polarization: -62.51 SS G_CDS: -0.26 Total: -62.77 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.09 Total: -9.89 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.03 Total: 15.89 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.28 -9.55 -42.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089556419.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.352 kcal (2) G-P(sol) polarization free energy of solvation -33.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds