Wall clock time and date at job start Fri Apr 10 2020 18:25:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.35588 * 2 1 4 4 C 1.54839 * 109.35761 * 119.72320 * 2 1 3 5 5 C 1.50134 * 110.81490 * 81.33871 * 4 2 1 6 6 H 1.08996 * 110.24978 * 338.56527 * 5 4 2 7 7 N 1.46503 * 110.24870 * 216.65487 * 5 4 2 8 8 C 1.34773 * 119.99780 * 154.99953 * 7 5 4 9 9 O 1.21281 * 120.00237 * 0.02562 * 8 7 5 10 10 C 1.50703 * 120.00016 * 179.97438 * 8 7 5 11 11 N 1.46492 * 109.46924 * 179.97438 * 10 8 7 12 12 C 1.34440 * 126.81945 * 125.00294 * 11 10 8 13 13 N 1.30826 * 108.07630 * 179.97438 * 12 11 10 14 14 C 1.33244 * 109.83133 * 0.02562 * 13 12 11 15 15 N 1.30707 * 108.94543 * 0.02562 * 14 13 12 16 16 C 1.52521 * 105.41300 * 97.68175 * 5 4 2 17 17 C 1.46241 * 114.28062 * 270.59413 * 16 5 4 18 18 N 1.50170 * 107.53139 * 58.40876 * 17 16 5 19 19 C 1.36928 * 120.53951 * 109.61346 * 18 17 16 20 20 H 1.07994 * 120.00465 * 156.64707 * 19 18 17 21 21 C 1.38826 * 119.99986 * 336.65336 * 19 18 17 22 22 N 1.31619 * 119.99624 * 340.44117 * 21 19 18 23 23 Si 1.86792 * 120.00047 * 160.44577 * 21 19 18 24 24 H 1.48497 * 109.47580 * 59.99856 * 23 21 19 25 25 H 1.48502 * 109.47007 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47147 * 299.99737 * 23 21 19 27 27 C 1.43432 * 118.92487 * 289.59093 * 18 17 16 28 28 H 1.09006 * 109.47454 * 300.27668 * 1 2 3 29 29 H 1.09004 * 109.46853 * 60.27305 * 1 2 3 30 30 H 1.08992 * 109.47561 * 180.27534 * 1 2 3 31 31 H 1.09003 * 109.46625 * 179.72517 * 3 2 1 32 32 H 1.08999 * 109.46894 * 299.72199 * 3 2 1 33 33 H 1.09001 * 109.47485 * 59.72680 * 3 2 1 34 34 H 1.08999 * 109.21334 * 320.99275 * 4 2 1 35 35 H 1.08997 * 109.17458 * 201.65565 * 4 2 1 36 36 H 0.96997 * 120.00117 * 334.99776 * 7 5 4 37 37 H 1.09002 * 109.46724 * 60.00170 * 10 8 7 38 38 H 1.08996 * 109.46936 * 300.00547 * 10 8 7 39 39 H 1.07996 * 125.95817 * 0.02562 * 12 11 10 40 40 H 1.08005 * 125.53059 * 179.73382 * 14 13 12 41 41 H 1.09001 * 108.52536 * 31.83508 * 16 5 4 42 42 H 1.09003 * 108.52238 * 149.34928 * 16 5 4 43 43 H 1.08995 * 109.84160 * 298.90337 * 17 16 5 44 44 H 1.09001 * 109.84792 * 177.91537 * 17 16 5 45 45 H 0.96996 * 119.99987 * 180.02562 * 22 21 19 46 46 H 1.08998 * 108.16047 * 329.85052 * 27 18 17 47 47 H 1.09003 * 108.00191 * 213.15724 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0371 1.4436 0.0000 4 6 2.0433 -0.7243 1.2687 5 6 2.0207 -2.2134 1.0787 6 1 1.3235 -2.4820 0.2851 7 7 1.6451 -2.8784 2.3290 8 6 1.0802 -4.1016 2.2982 9 8 0.8833 -4.6521 1.2356 10 6 0.6943 -4.7860 3.5843 11 7 0.1045 -6.0928 3.2840 12 6 0.4991 -7.2846 3.7650 13 7 -0.2809 -8.2050 3.2592 14 6 -1.1811 -7.6421 2.4540 15 7 -0.9850 -6.3500 2.4359 16 6 3.4445 -2.5935 0.6857 17 6 3.6999 -2.5615 -0.7539 18 7 3.4056 -1.1696 -1.2346 19 6 4.4210 -0.3417 -1.6325 20 1 4.2179 0.4759 -2.3082 21 6 5.7118 -0.5532 -1.1672 22 7 5.9106 -1.2694 -0.0810 23 14 7.1662 0.1786 -2.0827 24 1 7.0356 1.6574 -2.1182 25 1 8.4254 -0.1900 -1.3870 26 1 7.1941 -0.3493 -3.4704 27 6 2.0435 -0.7217 -1.2708 28 1 -0.3634 0.5181 0.8875 29 1 -0.3633 0.5096 -0.8925 30 1 -0.3634 -1.0275 0.0049 31 1 3.1272 1.4457 0.0049 32 1 1.6768 1.9552 -0.8925 33 1 1.6688 1.9581 0.8875 34 1 1.4076 -0.4609 2.1140 35 1 3.0647 -0.4046 1.4749 36 1 1.8029 -2.4383 3.1788 37 1 -0.0327 -4.1735 4.1177 38 1 1.5806 -4.9206 4.2043 39 1 1.3168 -7.4526 4.4502 40 1 -1.9455 -8.1687 1.9018 41 1 4.1342 -1.9058 1.1751 42 1 3.6476 -3.6002 1.0511 43 1 3.0489 -3.2736 -1.2610 44 1 4.7434 -2.8079 -0.9502 45 1 6.8124 -1.4170 0.2443 46 1 1.4059 -1.5872 -1.4510 47 1 1.9351 -0.0409 -2.1152 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089556419.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:07 Heat of formation + Delta-G solvation = 67.026014 kcal Electronic energy + Delta-G solvation = -28576.167664 eV Core-core repulsion = 24796.283860 eV Total energy + Delta-G solvation = -3779.883803 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.96748 -41.18877 -39.67584 -36.27204 -35.96606 -34.95982 -33.31004 -32.40156 -32.11746 -29.60293 -28.41282 -28.05390 -27.32019 -25.15075 -23.80982 -22.92896 -22.84839 -21.70703 -21.45621 -19.55285 -18.62102 -18.30999 -18.21931 -17.06278 -16.96032 -16.54774 -16.03572 -15.84099 -15.82265 -15.28514 -15.24119 -15.13532 -14.82079 -14.47532 -14.32553 -13.88025 -13.62273 -13.51618 -13.25185 -13.06712 -12.90881 -12.75101 -12.64748 -12.51866 -12.38344 -12.27092 -11.94196 -11.70845 -11.56475 -11.43201 -11.19520 -11.14668 -11.00765 -10.97442 -10.73881 -10.51610 -10.41295 -9.90978 -8.63574 -7.80138 -5.19219 0.71568 1.35465 1.48022 1.51724 1.56301 1.59979 2.05021 2.22106 2.55613 3.32989 3.53900 3.55868 3.59078 3.77738 3.98108 4.05451 4.07891 4.11884 4.17363 4.43523 4.43896 4.47384 4.55026 4.72857 4.78328 4.87475 4.92558 4.97147 5.06423 5.11047 5.19592 5.25594 5.27011 5.30643 5.35077 5.45900 5.50453 5.53750 5.62854 5.68294 5.73183 5.79937 5.90783 6.07448 6.43851 6.60659 7.14849 7.18793 7.30204 7.91468 8.44435 9.24603 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.017661 B = 0.003456 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.989236 B = 8099.925156 C = 8986.402700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.085 4.085 3 C -0.121 4.121 4 C -0.090 4.090 5 C 0.164 3.836 6 H 0.061 0.939 7 N -0.703 5.703 8 C 0.491 3.509 9 O -0.571 6.571 10 C 0.114 3.886 11 N -0.376 5.376 12 C 0.262 3.738 13 N -0.577 5.577 14 C 0.182 3.818 15 N -0.336 5.336 16 C -0.114 4.114 17 C 0.173 3.827 18 N -0.595 5.595 19 C -0.250 4.250 20 H 0.061 0.939 21 C -0.037 4.037 22 N -0.914 5.914 23 Si 0.951 3.049 24 H -0.280 1.280 25 H -0.295 1.295 26 H -0.290 1.290 27 C 0.164 3.836 28 H 0.069 0.931 29 H 0.056 0.944 30 H 0.040 0.960 31 H 0.036 0.964 32 H 0.048 0.952 33 H 0.060 0.940 34 H 0.077 0.923 35 H 0.052 0.948 36 H 0.417 0.583 37 H 0.149 0.851 38 H 0.181 0.819 39 H 0.267 0.733 40 H 0.234 0.766 41 H 0.083 0.917 42 H 0.018 0.982 43 H -0.003 1.003 44 H 0.060 0.940 45 H 0.247 0.753 46 H 0.022 0.978 47 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.754 -3.344 13.767 17.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.089 4.089 3 C -0.178 4.178 4 C -0.128 4.128 5 C 0.060 3.940 6 H 0.079 0.921 7 N -0.356 5.356 8 C 0.277 3.723 9 O -0.449 6.449 10 C -0.011 4.011 11 N -0.167 5.167 12 C -0.034 4.034 13 N -0.305 5.305 14 C -0.120 4.120 15 N -0.163 5.163 16 C -0.154 4.154 17 C 0.049 3.951 18 N -0.317 5.317 19 C -0.380 4.380 20 H 0.078 0.922 21 C -0.234 4.234 22 N -0.560 5.560 23 Si 0.781 3.219 24 H -0.206 1.206 25 H -0.221 1.221 26 H -0.217 1.217 27 C 0.036 3.964 28 H 0.088 0.912 29 H 0.075 0.925 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.071 0.929 36 H 0.254 0.746 37 H 0.166 0.834 38 H 0.199 0.801 39 H 0.282 0.718 40 H 0.250 0.750 41 H 0.101 0.899 42 H 0.037 0.963 43 H 0.015 0.985 44 H 0.078 0.922 45 H 0.056 0.944 46 H 0.040 0.960 47 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -11.104 -3.527 12.724 17.253 hybrid contribution 1.465 0.501 -0.503 1.627 sum -9.640 -3.026 12.222 15.857 Atomic orbital electron populations 1.21750 0.93589 1.00869 1.02200 1.21826 0.95117 0.95783 0.96166 1.21647 1.00428 0.94949 1.00795 1.21619 1.01207 0.92269 0.97726 1.20021 0.95317 0.92847 0.85852 0.92097 1.45938 1.61603 1.17803 1.10254 1.21218 0.77318 0.81935 0.91833 1.90796 1.54960 1.65410 1.33747 1.21977 1.03253 0.81287 0.94559 1.50136 1.23908 1.08553 1.34092 1.27016 0.99175 0.79654 0.97516 1.70517 1.09478 1.33939 1.16556 1.26477 0.99305 0.88803 0.97453 1.78105 1.05653 1.18787 1.13771 1.21078 0.96240 0.99311 0.98750 1.19911 0.98510 0.83911 0.92775 1.44247 1.01899 1.09682 1.75830 1.19247 0.88222 1.10258 1.20258 0.92175 1.25397 0.99807 1.01212 0.96935 1.70068 1.19963 1.44678 1.21260 0.85601 0.79841 0.78262 0.78214 1.20589 1.22128 1.21727 1.20601 0.85254 0.95495 0.95054 0.91218 0.92495 0.94069 0.94514 0.93334 0.92149 0.90481 0.92886 0.74591 0.83389 0.80145 0.71765 0.74984 0.89873 0.96306 0.98456 0.92185 0.94392 0.95986 0.95530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.44 8.21 71.98 0.59 -2.85 16 2 C -0.09 -2.85 0.76 -50.90 -0.04 -2.89 16 3 C -0.12 -4.00 8.28 71.98 0.60 -3.41 16 4 C -0.09 -2.91 4.15 30.30 0.13 -2.78 16 5 C 0.16 5.64 2.16 43.91 0.09 5.73 16 6 H 0.06 2.47 5.16 -2.39 -0.01 2.46 16 7 N -0.70 -17.24 4.95 -447.71 -2.22 -19.45 16 8 C 0.49 12.95 7.86 87.66 0.69 13.64 16 9 O -0.57 -22.38 15.39 -3.03 -0.05 -22.42 16 10 C 0.11 1.60 7.03 85.64 0.60 2.20 16 11 N -0.38 -8.05 3.41 -355.82 -1.21 -9.27 16 12 C 0.26 4.67 12.63 180.36 2.28 6.94 16 13 N -0.58 -13.90 11.19 -204.00 -2.28 -16.18 16 14 C 0.18 4.59 13.03 180.77 2.36 6.95 16 15 N -0.34 -9.69 11.82 -61.24 -0.72 -10.42 16 16 C -0.11 -4.83 4.74 28.35 0.13 -4.69 16 17 C 0.17 8.46 5.25 83.58 0.44 8.90 16 18 N -0.60 -28.88 2.60 -707.84 -1.84 -30.72 16 19 C -0.25 -13.13 8.94 84.04 0.75 -12.38 16 20 H 0.06 3.18 7.88 -2.91 -0.02 3.15 16 21 C -0.04 -1.98 4.91 84.87 0.42 -1.56 16 22 N -0.91 -49.26 9.43 21.66 0.20 -49.05 16 23 Si 0.95 43.75 29.60 68.60 2.03 45.78 16 24 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 25 H -0.30 -13.63 7.11 99.48 0.71 -12.92 16 26 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 27 C 0.16 6.80 4.00 87.60 0.35 7.15 16 28 H 0.07 1.58 8.13 -2.38 -0.02 1.56 16 29 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.04 1.18 7.57 -2.39 -0.02 1.17 16 31 H 0.04 1.48 7.45 -2.39 -0.02 1.46 16 32 H 0.05 1.52 8.11 -2.39 -0.02 1.50 16 33 H 0.06 1.66 8.14 -2.39 -0.02 1.65 16 34 H 0.08 1.94 7.68 -2.39 -0.02 1.92 16 35 H 0.05 2.07 6.65 -2.39 -0.02 2.05 16 36 H 0.42 6.60 8.53 -92.71 -0.79 5.81 16 37 H 0.15 1.19 8.14 -2.39 -0.02 1.18 16 38 H 0.18 0.64 8.09 -2.39 -0.02 0.62 16 39 H 0.27 1.53 8.06 -2.91 -0.02 1.50 16 40 H 0.23 4.29 8.06 -2.91 -0.02 4.27 16 41 H 0.08 3.91 5.29 -2.39 -0.01 3.90 16 42 H 0.02 0.79 8.02 -2.39 -0.02 0.77 16 43 H 0.00 -0.13 8.12 -2.39 -0.02 -0.15 16 44 H 0.06 3.29 6.05 -2.39 -0.01 3.27 16 45 H 0.25 13.15 8.31 -92.71 -0.77 12.38 16 46 H 0.02 0.92 6.69 -2.39 -0.02 0.91 16 47 H 0.03 1.12 7.81 -2.39 -0.02 1.10 16 Total: -1.00 -77.88 367.74 3.49 -74.40 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: 0.19 Total: 16.38 kcal Atomic # 6 Polarization: 11.58 SS G_CDS: 9.38 Total: 20.96 kcal Atomic # 7 Polarization: -127.02 SS G_CDS: -8.07 Total: -135.09 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -0.05 Total: -22.42 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -77.88 3.49 -74.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089556419.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.421 kcal (2) G-P(sol) polarization free energy of solvation -77.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds