Wall clock time and date at job start Fri Apr 10 2020 18:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34586 * 125.74966 * 2 1 4 4 N 1.30868 * 107.62596 * 179.97438 * 3 2 1 5 5 C 1.34545 * 107.26710 * 0.02562 * 4 3 2 6 6 C 1.47873 * 126.04481 * 180.02562 * 5 4 3 7 7 O 1.21560 * 120.00019 * 179.97438 * 6 5 4 8 8 N 1.34775 * 120.00338 * 359.96632 * 6 5 4 9 9 C 1.46501 * 120.00414 * 179.97438 * 8 6 5 10 10 C 1.52994 * 109.47039 * 180.02562 * 9 8 6 11 11 H 1.08994 * 109.59048 * 299.91637 * 10 9 8 12 12 C 1.53198 * 109.58329 * 179.63325 * 10 9 8 13 13 C 1.53076 * 109.29482 * 185.71892 * 12 10 9 14 14 C 1.53044 * 109.65365 * 61.15750 * 13 12 10 15 15 C 1.53001 * 109.49310 * 178.75051 * 14 13 12 16 16 C 1.52997 * 109.52662 * 58.66890 * 14 13 12 17 17 C 1.53192 * 109.31173 * 298.69358 * 14 13 12 18 18 N 1.46925 * 108.77364 * 54.64306 * 17 14 13 19 19 C 1.36941 * 120.63269 * 126.40990 * 18 17 14 20 20 H 1.07999 * 119.99809 * 210.99635 * 19 18 17 21 21 C 1.38805 * 119.99719 * 31.00310 * 19 18 17 22 22 N 1.31615 * 120.00474 * 14.23672 * 21 19 18 23 23 Si 1.86804 * 119.99499 * 194.23518 * 21 19 18 24 24 H 1.48506 * 109.47020 * 60.00231 * 23 21 19 25 25 H 1.48501 * 109.47139 * 179.97438 * 23 21 19 26 26 H 1.48491 * 109.47224 * 299.99885 * 23 21 19 27 27 N 1.28846 * 125.74782 * 179.68358 * 2 1 3 28 28 H 1.08999 * 109.46549 * 90.00163 * 1 2 3 29 29 H 1.08993 * 109.47469 * 210.00281 * 1 2 3 30 30 H 1.08994 * 109.46992 * 330.00908 * 1 2 3 31 31 H 1.08001 * 126.18778 * 0.02562 * 3 2 1 32 32 H 0.97004 * 119.99478 * 0.02562 * 8 6 5 33 33 H 1.09004 * 109.47239 * 300.00645 * 9 8 6 34 34 H 1.09000 * 109.46624 * 60.00361 * 9 8 6 35 35 H 1.08995 * 109.49749 * 305.53079 * 12 10 9 36 36 H 1.08998 * 109.49680 * 65.63057 * 12 10 9 37 37 H 1.09002 * 109.34603 * 301.13455 * 13 12 10 38 38 H 1.08994 * 109.45311 * 181.24265 * 13 12 10 39 39 H 1.09004 * 109.46943 * 179.83448 * 15 14 13 40 40 H 1.09003 * 109.47064 * 299.83226 * 15 14 13 41 41 H 1.08996 * 109.47411 * 59.83605 * 15 14 13 42 42 H 1.08999 * 109.46911 * 300.13799 * 16 14 13 43 43 H 1.08999 * 109.47020 * 60.14432 * 16 14 13 44 44 H 1.09004 * 109.46742 * 180.14688 * 16 14 13 45 45 H 1.08993 * 109.58938 * 294.85191 * 17 14 13 46 46 H 1.09003 * 109.70119 * 174.49084 * 17 14 13 47 47 H 0.96996 * 120.00343 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2513 1.0923 0.0000 4 7 3.4951 0.6852 0.0006 5 6 3.4750 -0.6601 0.0003 6 6 4.6575 -1.5480 0.0013 7 8 4.5114 -2.7548 0.0015 8 7 5.8972 -1.0193 0.0019 9 6 7.0687 -1.8990 0.0034 10 6 8.3426 -1.0517 0.0044 11 1 8.3642 -0.4232 -0.8858 12 6 9.5695 -1.9691 0.0153 13 6 10.8348 -1.1198 0.1602 14 6 10.7905 -0.3517 1.4832 15 6 12.0707 0.4716 1.6387 16 6 10.6748 -1.3405 2.6450 17 6 9.5775 0.5840 1.4853 18 7 8.3706 -0.2057 1.2054 19 6 7.2920 -0.1540 2.0477 20 1 6.6563 -1.0191 2.1646 21 6 7.0159 1.0105 2.7508 22 7 7.6020 2.1390 2.4113 23 14 5.8123 0.9759 4.1790 24 1 6.3050 0.0371 5.2189 25 1 5.6929 2.3377 4.7589 26 1 4.4828 0.5252 3.6950 27 7 2.2178 -1.0457 0.0058 28 1 -0.3632 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5137 31 1 1.9165 2.1191 0.0004 32 1 6.0137 -0.0563 0.0020 33 1 7.0500 -2.5275 0.8938 34 1 7.0514 -2.5286 -0.8862 35 1 9.4994 -2.6603 0.8551 36 1 9.6112 -2.5318 -0.9173 37 1 10.8925 -0.4136 -0.6680 38 1 11.7108 -1.7683 0.1461 39 1 12.0374 1.0208 2.5797 40 1 12.9335 -0.1946 1.6372 41 1 12.1533 1.1750 0.8103 42 1 9.7632 -1.9274 2.5331 43 1 11.5381 -2.0059 2.6430 44 1 10.6407 -0.7923 3.5865 45 1 9.7024 1.3458 0.7158 46 1 9.4836 1.0616 2.4606 47 1 7.4093 2.9527 2.9030 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089635207.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:22 Heat of formation + Delta-G solvation = 78.233213 kcal Electronic energy + Delta-G solvation = -28772.237679 eV Core-core repulsion = 24992.839856 eV Total energy + Delta-G solvation = -3779.397823 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.18144 -39.14128 -38.21013 -35.01924 -34.42908 -33.10672 -32.05285 -31.51053 -29.91359 -28.33236 -26.99482 -26.55039 -25.39957 -24.18901 -22.82388 -22.19465 -21.74089 -20.02819 -19.79741 -17.83988 -17.82465 -16.60544 -16.50515 -15.82613 -15.57395 -15.43163 -14.49628 -14.27146 -14.05908 -13.80792 -13.68574 -13.44953 -13.28814 -13.18641 -13.09593 -12.78731 -12.34340 -12.10656 -11.73325 -11.59694 -11.34617 -11.22420 -11.08443 -10.78404 -10.72483 -10.56982 -10.34506 -10.21281 -10.15269 -10.04855 -10.02311 -9.73526 -9.63738 -9.36577 -9.33302 -9.19918 -8.48473 -8.14670 -6.54865 -5.74949 -3.19683 1.67526 2.33383 2.44110 3.41198 3.44329 3.49282 3.63851 3.93712 4.38202 4.48493 4.52993 4.81929 4.98460 5.08778 5.25224 5.31792 5.39042 5.52009 5.56664 5.67818 5.81883 5.93422 6.09267 6.14713 6.20863 6.24612 6.29787 6.38231 6.42216 6.50954 6.52906 6.54116 6.54956 6.58153 6.65815 6.71593 6.96786 7.00412 7.07681 7.18823 7.20912 7.45112 7.73425 7.88851 8.10677 8.44759 8.49950 8.87575 9.26005 9.87265 10.44956 11.32278 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.015889 B = 0.004458 C = 0.003820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.820803 B = 6279.218874 C = 7328.035995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.313 5.313 3 C 0.183 3.817 4 N -0.466 5.466 5 C 0.156 3.844 6 C 0.605 3.395 7 O -0.546 6.546 8 N -0.669 5.669 9 C 0.135 3.865 10 C 0.160 3.840 11 H 0.032 0.968 12 C -0.130 4.130 13 C -0.095 4.095 14 C -0.095 4.095 15 C -0.133 4.133 16 C -0.124 4.124 17 C 0.188 3.812 18 N -0.584 5.584 19 C -0.250 4.250 20 H 0.067 0.933 21 C 0.018 3.982 22 N -0.895 5.895 23 Si 0.891 3.109 24 H -0.286 1.286 25 H -0.292 1.292 26 H -0.285 1.285 27 N -0.264 5.264 28 H 0.087 0.913 29 H 0.096 0.904 30 H 0.098 0.902 31 H 0.223 0.777 32 H 0.426 0.574 33 H 0.069 0.931 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.051 0.949 37 H 0.052 0.948 38 H 0.044 0.956 39 H 0.050 0.950 40 H 0.041 0.959 41 H 0.047 0.953 42 H 0.066 0.934 43 H 0.030 0.970 44 H 0.044 0.956 45 H 0.017 0.983 46 H 0.085 0.915 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.963 -0.713 -5.586 8.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.109 5.109 3 C -0.113 4.113 4 N -0.191 5.191 5 C -0.124 4.124 6 C 0.386 3.614 7 O -0.423 6.423 8 N -0.320 5.320 9 C 0.011 3.989 10 C 0.053 3.947 11 H 0.050 0.950 12 C -0.169 4.169 13 C -0.133 4.133 14 C -0.097 4.097 15 C -0.191 4.191 16 C -0.181 4.181 17 C 0.063 3.937 18 N -0.307 5.307 19 C -0.380 4.380 20 H 0.085 0.915 21 C -0.182 4.182 22 N -0.539 5.539 23 Si 0.722 3.278 24 H -0.212 1.212 25 H -0.218 1.218 26 H -0.212 1.212 27 N -0.103 5.103 28 H 0.105 0.895 29 H 0.115 0.885 30 H 0.117 0.883 31 H 0.239 0.761 32 H 0.265 0.735 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.060 0.940 41 H 0.066 0.934 42 H 0.085 0.915 43 H 0.049 0.951 44 H 0.063 0.937 45 H 0.035 0.965 46 H 0.103 0.897 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -5.974 -1.853 -5.507 8.333 hybrid contribution -0.969 0.968 0.941 1.662 sum -6.943 -0.886 -4.565 8.357 Atomic orbital electron populations 1.22144 0.72875 1.05642 1.04541 1.47373 1.08996 1.04071 1.50485 1.26519 0.86059 0.95826 1.02864 1.71416 1.19800 1.09498 1.18351 1.23924 0.92122 0.89555 1.06817 1.16291 0.81444 0.85585 0.78093 1.90754 1.85965 1.13614 1.51940 1.45775 1.03376 1.12669 1.70209 1.21380 0.84002 0.92533 1.00980 1.20727 0.91002 0.91624 0.91322 0.95011 1.22009 0.95931 0.98372 1.00630 1.21408 0.96448 0.97969 0.97459 1.21246 0.97073 0.96988 0.94384 1.21757 0.96821 0.99312 1.01209 1.21699 1.00542 0.98435 0.97463 1.20788 0.81772 0.89864 1.01291 1.44011 1.13278 1.51101 1.22353 1.19053 1.04863 0.95614 1.18435 0.91527 1.24955 0.98191 0.94996 1.00062 1.69982 1.45394 0.98275 1.40251 0.86540 0.81628 0.76388 0.83259 1.21239 1.21778 1.21154 1.74294 1.03093 1.13116 1.19756 0.89464 0.88486 0.88308 0.76063 0.73452 0.91275 0.92346 0.91612 0.93060 0.92946 0.93689 0.93079 0.94025 0.93350 0.91545 0.95113 0.93679 0.96501 0.89675 0.93704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.60 11.38 59.85 0.68 1.28 16 2 N -0.31 -4.18 3.72 -69.40 -0.26 -4.44 16 3 C 0.18 2.51 12.62 -90.48 -1.14 1.37 16 4 N -0.47 -8.83 11.09 -12.36 -0.14 -8.97 16 5 C 0.16 3.19 7.96 -156.36 -1.24 1.95 16 6 C 0.60 13.30 7.83 -12.32 -0.10 13.20 16 7 O -0.55 -13.00 17.09 5.31 0.09 -12.91 16 8 N -0.67 -14.14 3.84 -61.24 -0.23 -14.37 16 9 C 0.13 2.64 4.43 -4.04 -0.02 2.62 16 10 C 0.16 3.13 3.01 -67.60 -0.20 2.92 16 11 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 12 C -0.13 -2.17 5.04 -26.59 -0.13 -2.31 16 13 C -0.10 -1.56 4.71 -26.67 -0.13 -1.69 16 14 C -0.10 -1.72 0.77 -154.39 -0.12 -1.84 16 15 C -0.13 -2.13 8.48 37.16 0.32 -1.81 16 16 C -0.12 -2.25 7.99 37.16 0.30 -1.95 16 17 C 0.19 4.19 3.95 -3.71 -0.01 4.18 16 18 N -0.58 -13.26 2.41 -164.78 -0.40 -13.66 16 19 C -0.25 -6.33 6.97 -15.06 -0.10 -6.43 16 20 H 0.07 1.76 5.85 -52.49 -0.31 1.46 16 21 C 0.02 0.47 4.96 -17.43 -0.09 0.38 16 22 N -0.90 -24.58 11.24 55.49 0.62 -23.95 16 23 Si 0.89 22.02 29.58 -169.99 -5.03 17.00 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 25 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 26 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 27 N -0.26 -4.84 12.08 32.07 0.39 -4.45 16 28 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.10 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.22 1.82 8.06 -52.49 -0.42 1.40 16 32 H 0.43 9.60 7.10 -40.82 -0.29 9.31 16 33 H 0.07 1.45 7.42 -51.93 -0.39 1.07 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.07 1.14 6.35 -51.93 -0.33 0.81 16 36 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.07 1.31 5.98 -51.93 -0.31 1.00 16 43 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.09 2.16 6.19 -51.93 -0.32 1.84 16 47 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 371.70 15.07 5.60 5.60 Total: -1.00 -33.15 371.70 -8.77 -41.91 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -7.42 Total: 6.38 kcal Atomic # 6 Polarization: 13.87 SS G_CDS: -2.00 Total: 11.87 kcal Atomic # 7 Polarization: -69.83 SS G_CDS: -0.02 Total: -69.85 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: 0.09 Total: -12.91 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.03 Total: 17.00 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.15 -8.77 -41.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089635207.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.147 kcal (2) G-P(sol) polarization free energy of solvation -33.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds