Wall clock time and date at job start Fri Apr 10 2020 18:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.49992 * 2 1 4 4 C 1.53039 * 109.49521 * 239.90765 * 2 1 3 5 5 C 1.53040 * 109.54056 * 301.41160 * 4 2 1 6 6 C 1.53626 * 109.24216 * 298.51759 * 5 4 2 7 7 H 1.09009 * 109.73632 * 295.11441 * 6 5 4 8 8 C 1.53001 * 109.66612 * 174.54686 * 6 5 4 9 9 N 1.46498 * 109.47315 * 180.75925 * 8 6 5 10 10 C 1.34768 * 120.00123 * 179.97438 * 9 8 6 11 11 O 1.21283 * 120.00251 * 0.02562 * 10 9 8 12 12 C 1.50710 * 120.00081 * 180.02562 * 10 9 8 13 13 N 1.46496 * 109.47127 * 180.02562 * 12 10 9 14 14 C 1.34429 * 126.82356 * 124.99704 * 13 12 10 15 15 N 1.30834 * 108.08105 * 179.97438 * 14 13 12 16 16 C 1.33246 * 109.82598 * 0.02562 * 15 14 13 17 17 N 1.30715 * 108.94441 * 359.74614 * 16 15 14 18 18 N 1.46927 * 108.54485 * 54.84904 * 6 5 4 19 19 C 1.36934 * 120.62622 * 126.36948 * 18 6 5 20 20 H 1.08000 * 120.00705 * 324.52934 * 19 18 6 21 21 C 1.38815 * 119.99813 * 144.52923 * 19 18 6 22 22 N 1.31615 * 119.99945 * 337.03976 * 21 19 18 23 23 Si 1.86807 * 119.99797 * 156.75933 * 21 19 18 24 24 H 1.48496 * 109.47058 * 60.00651 * 23 21 19 25 25 H 1.48503 * 109.46941 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47021 * 299.99895 * 23 21 19 27 27 C 1.46920 * 118.73847 * 306.09613 * 18 6 5 28 28 H 1.08995 * 109.47199 * 299.93505 * 1 2 3 29 29 H 1.09004 * 109.47135 * 59.93324 * 1 2 3 30 30 H 1.09000 * 109.47249 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.47155 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47000 * 300.06977 * 3 2 1 33 33 H 1.09003 * 109.46528 * 60.06650 * 3 2 1 34 34 H 1.09000 * 109.46598 * 61.43724 * 4 2 1 35 35 H 1.09011 * 109.45950 * 181.39414 * 4 2 1 36 36 H 1.09001 * 109.49704 * 58.58574 * 5 4 2 37 37 H 1.08999 * 109.50055 * 178.68622 * 5 4 2 38 38 H 1.08998 * 109.46821 * 300.76274 * 8 6 5 39 39 H 1.09001 * 109.46885 * 60.76007 * 8 6 5 40 40 H 0.97001 * 119.99734 * 359.97438 * 9 8 6 41 41 H 1.08994 * 109.46794 * 299.99939 * 12 10 9 42 42 H 1.08994 * 109.46865 * 60.00110 * 12 10 9 43 43 H 1.07999 * 125.96263 * 0.02562 * 14 13 12 44 44 H 1.08000 * 125.52522 * 180.02562 * 16 15 14 45 45 H 0.96996 * 120.00206 * 357.70190 * 22 21 19 46 46 H 1.08999 * 109.58490 * 173.64666 * 27 18 6 47 47 H 1.08996 * 109.59278 * 293.93125 * 27 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0407 1.4423 0.0000 4 6 2.0407 -0.7233 -1.2482 5 6 1.5030 -2.1560 -1.2656 6 6 2.0188 -2.9055 -0.0277 7 1 3.1033 -3.0023 -0.0814 8 6 1.3796 -4.2941 0.0370 9 7 1.8604 -4.9980 1.2284 10 6 1.4286 -6.2468 1.4934 11 8 0.6422 -6.7881 0.7454 12 6 1.9227 -6.9708 2.7194 13 7 1.3108 -8.3004 2.7812 14 6 1.9514 -9.4787 2.8727 15 7 1.0521 -10.4284 2.9031 16 6 -0.1682 -9.8979 2.8329 17 7 -0.0618 -8.5970 2.7619 18 7 1.6515 -2.1379 1.1700 19 6 0.9639 -2.7309 2.1950 20 1 0.2182 -3.4824 1.9815 21 6 1.2253 -2.3662 3.5086 22 7 2.3832 -1.8255 3.8235 23 14 -0.0695 -2.6355 4.8280 24 1 -0.3939 -4.0820 4.9152 25 1 0.4519 -2.1650 6.1365 26 1 -1.2957 -1.8730 4.4812 27 6 2.0413 -0.7236 1.2497 28 1 -0.3633 0.5128 0.8905 29 1 -0.3633 0.5149 -0.8894 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1306 1.4417 -0.0005 32 1 1.6766 1.9566 -0.8894 33 1 1.6785 1.9559 0.8906 34 1 1.6987 -0.1963 -2.1389 35 1 3.1305 -0.7447 -1.2352 36 1 0.4132 -2.1358 -1.2536 37 1 1.8480 -2.6633 -2.1665 38 1 0.2955 -4.1930 0.0874 39 1 1.6506 -4.8606 -0.8539 40 1 2.4896 -4.5652 1.8265 41 1 3.0068 -7.0721 2.6691 42 1 1.6517 -6.4039 3.6100 43 1 3.0216 -9.6171 2.9146 44 1 -1.0949 -10.4524 2.8386 45 1 3.0664 -1.7126 3.1443 46 1 1.6008 -0.2727 2.1389 47 1 3.1273 -0.6461 1.3006 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099335218.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:02 Heat of formation + Delta-G solvation = 72.103503 kcal Electronic energy + Delta-G solvation = -28603.861654 eV Core-core repulsion = 24824.198027 eV Total energy + Delta-G solvation = -3779.663627 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.91290 -39.46232 -38.57110 -35.28835 -33.81458 -33.51850 -32.29978 -31.05368 -29.93934 -28.67804 -26.89843 -26.76718 -25.48686 -23.58844 -22.31024 -21.94234 -21.84054 -20.33031 -19.91560 -18.02462 -17.56312 -17.20321 -16.59301 -15.72250 -15.42359 -15.22502 -14.55957 -14.50473 -14.42378 -14.08975 -13.88964 -13.69444 -13.50126 -13.37422 -13.03396 -12.74519 -12.45354 -12.18116 -11.95806 -11.74196 -11.51347 -11.47657 -11.33530 -10.86395 -10.85870 -10.76538 -10.38290 -10.17997 -10.06370 -10.02698 -9.97763 -9.90101 -9.69510 -9.62468 -9.31032 -9.14200 -8.59325 -8.32905 -6.92310 -6.19070 -3.45014 1.77264 2.32864 2.95056 3.10459 3.38282 3.44466 3.59398 3.64164 4.37557 4.41573 4.58822 4.92855 4.97244 5.07600 5.16903 5.21739 5.29077 5.32833 5.43207 5.44899 5.58721 5.71315 5.84517 5.94557 6.01957 6.07142 6.14839 6.18989 6.29150 6.30219 6.31452 6.33114 6.37528 6.49000 6.57174 6.66899 6.75473 6.79529 6.83660 6.86018 7.01426 7.08104 7.12955 7.99332 8.04978 8.19560 8.45769 8.66960 8.95003 9.68118 10.17437 11.06264 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.016040 B = 0.004010 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.253529 B = 6980.574830 C = 8050.310553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.089 4.089 3 C -0.136 4.136 4 C -0.096 4.096 5 C -0.130 4.130 6 C 0.162 3.838 7 H 0.030 0.970 8 C 0.142 3.858 9 N -0.685 5.685 10 C 0.496 3.504 11 O -0.538 6.538 12 C 0.108 3.892 13 N -0.360 5.360 14 C 0.248 3.752 15 N -0.550 5.550 16 C 0.183 3.817 17 N -0.283 5.283 18 N -0.591 5.591 19 C -0.347 4.347 20 H 0.057 0.943 21 C -0.013 4.013 22 N -0.911 5.911 23 Si 1.054 2.946 24 H -0.292 1.292 25 H -0.286 1.286 26 H -0.293 1.293 27 C 0.169 3.831 28 H 0.045 0.955 29 H 0.033 0.967 30 H 0.066 0.934 31 H 0.048 0.952 32 H 0.045 0.955 33 H 0.051 0.949 34 H 0.048 0.952 35 H 0.052 0.948 36 H 0.066 0.934 37 H 0.051 0.949 38 H 0.066 0.934 39 H 0.053 0.947 40 H 0.414 0.586 41 H 0.126 0.874 42 H 0.123 0.877 43 H 0.217 0.783 44 H 0.214 0.786 45 H 0.270 0.730 46 H 0.071 0.929 47 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.199 -3.634 -4.788 6.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.090 4.090 3 C -0.194 4.194 4 C -0.133 4.133 5 C -0.170 4.170 6 C 0.055 3.945 7 H 0.047 0.953 8 C 0.018 3.982 9 N -0.337 5.337 10 C 0.279 3.721 11 O -0.415 6.415 12 C -0.018 4.018 13 N -0.151 5.151 14 C -0.049 4.049 15 N -0.278 5.278 16 C -0.120 4.120 17 N -0.110 5.110 18 N -0.316 5.316 19 C -0.476 4.476 20 H 0.074 0.926 21 C -0.217 4.217 22 N -0.550 5.550 23 Si 0.884 3.116 24 H -0.219 1.219 25 H -0.212 1.212 26 H -0.220 1.220 27 C 0.043 3.957 28 H 0.065 0.935 29 H 0.052 0.948 30 H 0.085 0.915 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.069 0.931 38 H 0.084 0.916 39 H 0.071 0.929 40 H 0.252 0.748 41 H 0.144 0.856 42 H 0.141 0.859 43 H 0.233 0.767 44 H 0.230 0.770 45 H 0.081 0.919 46 H 0.089 0.911 47 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 1.779 -3.595 -3.699 5.456 hybrid contribution 0.804 0.288 -1.350 1.597 sum 2.582 -3.307 -5.048 6.564 Atomic orbital electron populations 1.21707 0.94779 1.02297 0.99482 1.21112 0.96114 0.94276 0.97530 1.21792 1.00383 0.96374 1.00841 1.21407 0.99556 0.95401 0.96959 1.22074 1.01406 0.95930 0.97582 1.20825 0.95665 0.89461 0.88535 0.95284 1.21207 0.99698 0.91424 0.85898 1.45833 1.46932 1.13596 1.27297 1.20180 0.82652 0.82707 0.86561 1.90734 1.34290 1.67296 1.49207 1.21656 0.98659 0.80861 1.00627 1.49988 1.04736 1.06998 1.53387 1.25993 1.00470 0.80850 0.97555 1.70483 0.99486 1.32468 1.25320 1.25967 0.97072 0.89329 0.99651 1.78247 0.93194 1.16600 1.22916 1.44090 1.66176 1.04635 1.16690 1.19858 1.16893 1.24575 0.86289 0.92567 1.25798 0.99384 0.99313 0.97225 1.70819 1.03132 1.44623 1.36379 0.83644 0.75398 0.76193 0.76315 1.21870 1.21159 1.21960 1.20957 0.95727 0.84249 0.94759 0.93539 0.94770 0.91458 0.93289 0.93627 0.92954 0.93356 0.92932 0.91515 0.93073 0.91559 0.92868 0.74845 0.85584 0.85945 0.76672 0.76989 0.91907 0.91059 0.96588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.14 7.99 37.16 0.30 -1.84 16 2 C -0.09 -1.48 0.77 -154.39 -0.12 -1.59 16 3 C -0.14 -1.99 8.48 37.16 0.32 -1.68 16 4 C -0.10 -1.45 4.71 -26.69 -0.13 -1.57 16 5 C -0.13 -2.04 5.05 -26.39 -0.13 -2.17 16 6 C 0.16 2.86 3.03 -67.37 -0.20 2.66 16 7 H 0.03 0.53 8.14 -51.92 -0.42 0.10 16 8 C 0.14 2.53 4.45 -4.04 -0.02 2.51 16 9 N -0.69 -11.89 3.92 -60.29 -0.24 -12.13 16 10 C 0.50 8.71 7.87 -10.98 -0.09 8.62 16 11 O -0.54 -11.52 15.75 5.55 0.09 -11.43 16 12 C 0.11 1.47 7.03 -5.19 -0.04 1.43 16 13 N -0.36 -5.44 3.40 -63.81 -0.22 -5.65 16 14 C 0.25 3.12 12.63 -90.65 -1.14 1.97 16 15 N -0.55 -8.02 11.19 -15.83 -0.18 -8.20 16 16 C 0.18 2.73 13.03 -91.81 -1.20 1.53 16 17 N -0.28 -5.01 11.83 29.29 0.35 -4.66 16 18 N -0.59 -12.16 2.17 -164.52 -0.36 -12.51 16 19 C -0.35 -8.01 6.66 -15.06 -0.10 -8.11 16 20 H 0.06 1.40 6.17 -52.49 -0.32 1.08 16 21 C -0.01 -0.32 4.70 -17.43 -0.08 -0.41 16 22 N -0.91 -23.62 12.78 55.49 0.71 -22.91 16 23 Si 1.05 23.54 29.98 -169.99 -5.10 18.45 16 24 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 25 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 27 C 0.17 3.41 3.42 -3.71 -0.01 3.40 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 1.27 5.97 -51.93 -0.31 0.96 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.05 0.79 8.14 -51.92 -0.42 0.37 16 36 H 0.07 1.11 6.33 -51.93 -0.33 0.78 16 37 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.07 1.35 7.41 -51.93 -0.38 0.97 16 39 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.41 7.29 7.39 -40.82 -0.30 6.99 16 41 H 0.13 1.11 8.09 -51.93 -0.42 0.69 16 42 H 0.12 1.68 8.14 -51.93 -0.42 1.26 16 43 H 0.22 1.56 8.06 -52.49 -0.42 1.14 16 44 H 0.21 2.36 8.06 -52.49 -0.42 1.93 16 45 H 0.27 6.99 6.69 -40.82 -0.27 6.72 16 46 H 0.07 1.67 6.80 -51.93 -0.35 1.31 16 47 H 0.02 0.34 7.80 -51.93 -0.41 -0.07 16 LS Contribution 370.48 15.07 5.58 5.58 Total: -1.00 -31.14 370.48 -9.40 -40.53 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -7.39 Total: 8.18 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: -2.65 Total: 4.74 kcal Atomic # 7 Polarization: -66.13 SS G_CDS: 0.07 Total: -66.06 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.09 Total: -11.43 kcal Atomic # 14 Polarization: 23.54 SS G_CDS: -5.10 Total: 18.45 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.14 -9.40 -40.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099335218.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.636 kcal (2) G-P(sol) polarization free energy of solvation -31.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds