Wall clock time and date at job start Fri Apr 10 2020 18:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.49992 * 2 1 4 4 C 1.53039 * 109.49521 * 239.90765 * 2 1 3 5 5 C 1.53040 * 109.54056 * 301.41160 * 4 2 1 6 6 C 1.53626 * 109.24216 * 298.51759 * 5 4 2 7 7 H 1.09009 * 109.73632 * 295.11441 * 6 5 4 8 8 C 1.53001 * 109.66612 * 174.54686 * 6 5 4 9 9 N 1.46498 * 109.47315 * 180.75925 * 8 6 5 10 10 C 1.34768 * 120.00123 * 179.97438 * 9 8 6 11 11 O 1.21283 * 120.00251 * 0.02562 * 10 9 8 12 12 C 1.50710 * 120.00081 * 180.02562 * 10 9 8 13 13 N 1.46496 * 109.47127 * 180.02562 * 12 10 9 14 14 C 1.34429 * 126.82356 * 124.99704 * 13 12 10 15 15 N 1.30834 * 108.08105 * 179.97438 * 14 13 12 16 16 C 1.33246 * 109.82598 * 0.02562 * 15 14 13 17 17 N 1.30715 * 108.94441 * 359.74614 * 16 15 14 18 18 N 1.46927 * 108.54485 * 54.84904 * 6 5 4 19 19 C 1.36934 * 120.62622 * 126.36948 * 18 6 5 20 20 H 1.08000 * 120.00705 * 324.52934 * 19 18 6 21 21 C 1.38815 * 119.99813 * 144.52923 * 19 18 6 22 22 N 1.31615 * 119.99945 * 337.03976 * 21 19 18 23 23 Si 1.86807 * 119.99797 * 156.75933 * 21 19 18 24 24 H 1.48496 * 109.47058 * 60.00651 * 23 21 19 25 25 H 1.48503 * 109.46941 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47021 * 299.99895 * 23 21 19 27 27 C 1.46920 * 118.73847 * 306.09613 * 18 6 5 28 28 H 1.08995 * 109.47199 * 299.93505 * 1 2 3 29 29 H 1.09004 * 109.47135 * 59.93324 * 1 2 3 30 30 H 1.09000 * 109.47249 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.47155 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47000 * 300.06977 * 3 2 1 33 33 H 1.09003 * 109.46528 * 60.06650 * 3 2 1 34 34 H 1.09000 * 109.46598 * 61.43724 * 4 2 1 35 35 H 1.09011 * 109.45950 * 181.39414 * 4 2 1 36 36 H 1.09001 * 109.49704 * 58.58574 * 5 4 2 37 37 H 1.08999 * 109.50055 * 178.68622 * 5 4 2 38 38 H 1.08998 * 109.46821 * 300.76274 * 8 6 5 39 39 H 1.09001 * 109.46885 * 60.76007 * 8 6 5 40 40 H 0.97001 * 119.99734 * 359.97438 * 9 8 6 41 41 H 1.08994 * 109.46794 * 299.99939 * 12 10 9 42 42 H 1.08994 * 109.46865 * 60.00110 * 12 10 9 43 43 H 1.07999 * 125.96263 * 0.02562 * 14 13 12 44 44 H 1.08000 * 125.52522 * 180.02562 * 16 15 14 45 45 H 0.96996 * 120.00206 * 357.70190 * 22 21 19 46 46 H 1.08999 * 109.58490 * 173.64666 * 27 18 6 47 47 H 1.08996 * 109.59278 * 293.93125 * 27 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0407 1.4423 0.0000 4 6 2.0407 -0.7233 -1.2482 5 6 1.5030 -2.1560 -1.2656 6 6 2.0188 -2.9055 -0.0277 7 1 3.1033 -3.0023 -0.0814 8 6 1.3796 -4.2941 0.0370 9 7 1.8604 -4.9980 1.2284 10 6 1.4286 -6.2468 1.4934 11 8 0.6422 -6.7881 0.7454 12 6 1.9227 -6.9708 2.7194 13 7 1.3108 -8.3004 2.7812 14 6 1.9514 -9.4787 2.8727 15 7 1.0521 -10.4284 2.9031 16 6 -0.1682 -9.8979 2.8329 17 7 -0.0618 -8.5970 2.7619 18 7 1.6515 -2.1379 1.1700 19 6 0.9639 -2.7309 2.1950 20 1 0.2182 -3.4824 1.9815 21 6 1.2253 -2.3662 3.5086 22 7 2.3832 -1.8255 3.8235 23 14 -0.0695 -2.6355 4.8280 24 1 -0.3939 -4.0820 4.9152 25 1 0.4519 -2.1650 6.1365 26 1 -1.2957 -1.8730 4.4812 27 6 2.0413 -0.7236 1.2497 28 1 -0.3633 0.5128 0.8905 29 1 -0.3633 0.5149 -0.8894 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1306 1.4417 -0.0005 32 1 1.6766 1.9566 -0.8894 33 1 1.6785 1.9559 0.8906 34 1 1.6987 -0.1963 -2.1389 35 1 3.1305 -0.7447 -1.2352 36 1 0.4132 -2.1358 -1.2536 37 1 1.8480 -2.6633 -2.1665 38 1 0.2955 -4.1930 0.0874 39 1 1.6506 -4.8606 -0.8539 40 1 2.4896 -4.5652 1.8265 41 1 3.0068 -7.0721 2.6691 42 1 1.6517 -6.4039 3.6100 43 1 3.0216 -9.6171 2.9146 44 1 -1.0949 -10.4524 2.8386 45 1 3.0664 -1.7126 3.1443 46 1 1.6008 -0.2727 2.1389 47 1 3.1273 -0.6461 1.3006 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099335218.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:01 Heat of formation + Delta-G solvation = 54.946839 kcal Electronic energy + Delta-G solvation = -28604.605623 eV Core-core repulsion = 24824.198027 eV Total energy + Delta-G solvation = -3780.407596 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.98920 -40.91077 -40.00226 -36.74395 -35.23392 -34.95622 -33.72193 -32.15969 -31.58792 -29.93142 -28.15171 -28.11332 -27.20823 -24.98956 -23.84738 -23.11067 -22.86933 -21.86241 -21.27970 -19.51059 -19.08103 -18.33924 -18.03505 -17.16111 -16.73169 -16.52421 -16.01135 -15.82093 -15.64381 -15.56667 -15.38167 -14.98013 -14.86238 -14.79684 -14.38048 -14.09758 -13.72964 -13.64616 -13.50082 -13.08852 -12.83292 -12.75223 -12.69073 -12.56593 -12.35167 -12.25608 -11.99429 -11.78954 -11.66943 -11.37849 -11.30649 -11.08750 -11.00874 -10.85901 -10.76236 -10.48762 -10.39308 -9.89294 -8.70874 -8.07330 -5.32886 0.72239 1.29887 1.54276 1.58781 1.60371 1.76704 2.03639 2.34550 2.60148 3.29662 3.48590 3.52315 3.60747 3.77141 3.91304 3.93855 4.05249 4.08513 4.16622 4.23395 4.33729 4.41526 4.43686 4.57080 4.67417 4.75955 4.82524 4.86325 4.97093 4.99937 5.05354 5.08260 5.14225 5.22981 5.23394 5.27949 5.41954 5.45504 5.50300 5.55571 5.60038 5.72333 5.88446 6.08318 6.53318 6.65471 7.12476 7.15981 7.27472 7.85855 8.36239 9.13926 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.016040 B = 0.004010 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.253529 B = 6980.574830 C = 8050.310553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.086 4.086 3 C -0.131 4.131 4 C -0.090 4.090 5 C -0.126 4.126 6 C 0.163 3.837 7 H 0.037 0.963 8 C 0.148 3.852 9 N -0.684 5.684 10 C 0.493 3.507 11 O -0.580 6.580 12 C 0.113 3.887 13 N -0.373 5.373 14 C 0.263 3.737 15 N -0.572 5.572 16 C 0.184 3.816 17 N -0.343 5.343 18 N -0.601 5.601 19 C -0.320 4.320 20 H 0.037 0.963 21 C -0.047 4.047 22 N -0.935 5.935 23 Si 1.085 2.915 24 H -0.286 1.286 25 H -0.293 1.293 26 H -0.297 1.297 27 C 0.177 3.823 28 H 0.029 0.971 29 H 0.060 0.940 30 H 0.043 0.957 31 H 0.054 0.946 32 H 0.069 0.931 33 H 0.042 0.958 34 H 0.073 0.927 35 H 0.058 0.942 36 H 0.055 0.945 37 H 0.077 0.923 38 H 0.035 0.965 39 H 0.067 0.933 40 H 0.414 0.586 41 H 0.180 0.820 42 H 0.119 0.881 43 H 0.269 0.731 44 H 0.238 0.762 45 H 0.262 0.738 46 H 0.032 0.968 47 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.629 -3.826 -6.191 8.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.088 4.088 3 C -0.189 4.189 4 C -0.128 4.128 5 C -0.165 4.165 6 C 0.058 3.942 7 H 0.054 0.946 8 C 0.023 3.977 9 N -0.334 5.334 10 C 0.278 3.722 11 O -0.460 6.460 12 C -0.012 4.012 13 N -0.164 5.164 14 C -0.032 4.032 15 N -0.300 5.300 16 C -0.119 4.119 17 N -0.170 5.170 18 N -0.326 5.326 19 C -0.451 4.451 20 H 0.055 0.945 21 C -0.247 4.247 22 N -0.577 5.577 23 Si 0.915 3.085 24 H -0.213 1.213 25 H -0.219 1.219 26 H -0.224 1.224 27 C 0.052 3.948 28 H 0.048 0.952 29 H 0.079 0.921 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.061 0.939 34 H 0.092 0.908 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.096 0.904 38 H 0.053 0.947 39 H 0.086 0.914 40 H 0.251 0.749 41 H 0.198 0.802 42 H 0.137 0.863 43 H 0.284 0.716 44 H 0.254 0.746 45 H 0.072 0.928 46 H 0.051 0.949 47 H 0.024 0.976 Dipole moment (debyes) X Y Z Total from point charges 3.212 -3.781 -5.114 7.125 hybrid contribution 0.347 0.311 -0.970 1.076 sum 3.560 -3.469 -6.083 7.856 Atomic orbital electron populations 1.21635 0.95135 1.00888 0.99978 1.21056 0.95726 0.95504 0.96509 1.21739 1.00778 0.94768 1.01577 1.21386 0.99881 0.94758 0.96772 1.22028 1.00687 0.96476 0.97325 1.20944 0.95933 0.89208 0.88156 0.94592 1.21111 0.97751 0.91981 0.86809 1.45832 1.46703 1.13748 1.27119 1.20861 0.81693 0.82444 0.87227 1.90711 1.36081 1.68185 1.51025 1.21801 1.01377 0.80169 0.97894 1.50057 1.04193 1.07943 1.54228 1.27049 1.02257 0.79448 0.94486 1.70532 0.99701 1.33276 1.26500 1.26523 0.98339 0.88897 0.98102 1.78166 0.95410 1.18112 1.25326 1.44194 1.66109 1.05291 1.17006 1.19686 1.15517 1.23104 0.86770 0.94509 1.26309 0.99849 1.00004 0.98542 1.70879 1.03687 1.46951 1.36166 0.83181 0.74169 0.76211 0.74988 1.21276 1.21860 1.22416 1.20789 0.94757 0.84147 0.95143 0.95151 0.92106 0.93780 0.92645 0.91223 0.93892 0.90829 0.92282 0.92668 0.90403 0.94692 0.91449 0.74887 0.80232 0.86297 0.71556 0.74624 0.92752 0.94913 0.97603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.95 7.99 71.98 0.57 -3.37 16 2 C -0.09 -2.75 0.77 -52.10 -0.04 -2.79 16 3 C -0.13 -3.54 8.48 71.98 0.61 -2.93 16 4 C -0.09 -2.46 4.71 30.62 0.14 -2.32 16 5 C -0.13 -3.67 5.05 30.82 0.16 -3.51 16 6 C 0.16 5.62 3.03 45.12 0.14 5.76 16 7 H 0.04 1.23 8.14 -2.38 -0.02 1.21 16 8 C 0.15 5.24 4.45 86.38 0.38 5.63 16 9 N -0.68 -23.57 3.92 -463.06 -1.81 -25.39 16 10 C 0.49 17.14 7.87 87.66 0.69 17.83 16 11 O -0.58 -25.09 15.75 -3.04 -0.05 -25.14 16 12 C 0.11 2.89 7.03 85.64 0.60 3.49 16 13 N -0.37 -10.76 3.40 -355.81 -1.21 -11.97 16 14 C 0.26 5.92 12.63 180.36 2.28 8.20 16 15 N -0.57 -15.76 11.19 -204.00 -2.28 -18.04 16 16 C 0.18 5.40 13.03 180.76 2.36 7.76 16 17 N -0.34 -12.14 11.83 -61.24 -0.72 -12.87 16 18 N -0.60 -24.85 2.17 -674.43 -1.46 -26.32 16 19 C -0.32 -15.09 6.66 84.03 0.56 -14.53 16 20 H 0.04 1.90 6.17 -2.91 -0.02 1.88 16 21 C -0.05 -2.35 4.70 84.86 0.40 -1.95 16 22 N -0.94 -49.44 12.78 21.65 0.28 -49.16 16 23 Si 1.08 48.77 29.98 68.60 2.06 50.83 16 24 H -0.29 -12.48 7.11 99.48 0.71 -11.78 16 25 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 26 H -0.30 -13.40 7.11 99.48 0.71 -12.69 16 27 C 0.18 7.19 3.42 86.36 0.30 7.49 16 28 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 30 H 0.04 1.65 5.97 -2.39 -0.01 1.64 16 31 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 36 H 0.05 1.76 6.33 -2.39 -0.02 1.74 16 37 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.03 1.46 7.41 -2.39 -0.02 1.44 16 39 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 40 H 0.41 14.40 7.39 -92.71 -0.68 13.72 16 41 H 0.18 2.52 8.09 -2.39 -0.02 2.50 16 42 H 0.12 3.17 8.14 -2.39 -0.02 3.15 16 43 H 0.27 2.62 8.06 -2.91 -0.02 2.60 16 44 H 0.24 5.13 8.06 -2.91 -0.02 5.11 16 45 H 0.26 13.86 6.69 -92.71 -0.62 13.24 16 46 H 0.03 1.57 6.80 -2.39 -0.02 1.55 16 47 H 0.01 0.25 7.80 -2.39 -0.02 0.24 16 Total: -1.00 -70.71 370.48 4.37 -66.35 By element: Atomic # 1 Polarization: 26.53 SS G_CDS: 0.44 Total: 26.97 kcal Atomic # 6 Polarization: 15.61 SS G_CDS: 9.14 Total: 24.75 kcal Atomic # 7 Polarization: -136.53 SS G_CDS: -7.22 Total: -143.75 kcal Atomic # 8 Polarization: -25.09 SS G_CDS: -0.05 Total: -25.14 kcal Atomic # 14 Polarization: 48.77 SS G_CDS: 2.06 Total: 50.83 kcal Total: -70.71 4.37 -66.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099335218.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.292 kcal (2) G-P(sol) polarization free energy of solvation -70.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds