Wall clock time and date at job start Fri Apr 10 2020 18:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46508 * 109.47159 * 2 1 4 4 C 1.34810 * 126.59627 * 125.00548 * 3 2 1 5 5 C 1.36598 * 106.83984 * 180.02562 * 4 3 2 6 6 C 1.47522 * 125.76955 * 179.97438 * 5 4 3 7 7 O 1.21595 * 120.00049 * 359.97438 * 6 5 4 8 8 N 1.34771 * 119.99729 * 179.97438 * 6 5 4 9 9 C 1.48142 * 127.84091 * 0.03028 * 8 6 5 10 10 C 1.54388 * 104.62164 * 140.38954 * 9 8 6 11 11 H 1.09001 * 110.34478 * 142.73153 * 10 9 8 12 12 C 1.52996 * 110.34560 * 264.99751 * 10 9 8 13 13 C 1.54287 * 104.95908 * 23.86856 * 10 9 8 14 14 H 1.09005 * 110.34229 * 241.02745 * 13 10 9 15 15 C 1.52997 * 110.34642 * 118.87116 * 13 10 9 16 16 C 1.53000 * 109.47060 * 175.00176 * 15 13 10 17 17 N 1.46499 * 109.46840 * 180.02562 * 16 15 13 18 18 C 1.36936 * 120.00002 * 179.97438 * 17 16 15 19 19 H 1.08004 * 120.00140 * 359.97438 * 18 17 16 20 20 C 1.38814 * 120.00175 * 180.02562 * 18 17 16 21 21 N 1.31619 * 120.00164 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00095 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47433 * 89.99724 * 22 20 18 24 24 H 1.48495 * 109.47040 * 209.99943 * 22 20 18 25 25 H 1.48501 * 109.47069 * 329.99442 * 22 20 18 26 26 C 1.48150 * 127.83687 * 179.97438 * 8 6 5 27 27 N 1.34404 * 108.45552 * 0.23538 * 5 4 3 28 28 N 1.28760 * 109.52214 * 359.59186 * 27 5 4 29 29 H 1.08995 * 109.46792 * 299.99821 * 1 2 3 30 30 H 1.09000 * 109.47010 * 59.99970 * 1 2 3 31 31 H 1.09001 * 109.46718 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47569 * 240.00256 * 2 1 3 33 33 H 1.08995 * 109.47694 * 119.99863 * 2 1 3 34 34 H 1.07999 * 126.57772 * 359.97438 * 4 3 2 35 35 H 1.09000 * 110.40764 * 21.60362 * 9 8 6 36 36 H 1.09001 * 110.40859 * 259.17455 * 9 8 6 37 37 H 1.09000 * 109.47431 * 175.53250 * 12 10 9 38 38 H 1.09003 * 109.46774 * 295.53928 * 12 10 9 39 39 H 1.09003 * 109.47148 * 55.53310 * 12 10 9 40 40 H 1.09002 * 109.47153 * 54.99857 * 15 13 10 41 41 H 1.09001 * 109.46832 * 295.00047 * 15 13 10 42 42 H 1.09001 * 109.47194 * 299.99650 * 16 15 13 43 43 H 1.08992 * 109.47399 * 59.99823 * 16 15 13 44 44 H 0.97005 * 120.00448 * 359.97438 * 17 16 15 45 45 H 0.96993 * 120.00311 * 180.02562 * 21 20 18 46 46 H 1.09006 * 110.40392 * 100.82407 * 26 8 6 47 47 H 1.09000 * 110.40811 * 338.39544 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8716 1.9321 0.8865 5 6 3.0500 3.2326 0.5087 6 6 3.9064 4.2197 1.1931 7 8 4.5300 3.8986 2.1864 8 7 3.9977 5.4773 0.7173 9 6 3.3202 6.0519 -0.4682 10 6 2.9139 7.4763 -0.0327 11 1 3.0279 8.1734 -0.8629 12 6 1.4714 7.4855 0.4770 13 6 3.8882 7.8371 1.1079 14 1 3.3389 8.0226 2.0310 15 6 4.7197 9.0642 0.7291 16 6 5.5878 9.4791 1.9187 17 7 6.3835 10.6545 1.5561 18 6 7.2410 11.2089 2.4686 19 1 7.3304 10.7798 3.4557 20 6 7.9946 12.3229 2.1252 21 7 7.8854 12.8461 0.9224 22 14 9.1648 13.0787 3.3697 23 1 10.5011 12.4437 3.2419 24 1 9.2834 14.5369 3.1156 25 1 8.6402 12.8563 4.7411 26 6 4.7974 6.5992 1.2620 27 7 2.3088 3.4623 -0.5887 28 7 1.6877 2.3846 -0.9218 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.3262 1.4397 1.7335 35 1 2.4371 5.4658 -0.7226 36 1 4.0059 6.0943 -1.3145 37 1 1.2255 8.4783 0.8538 38 1 0.7960 7.2291 -0.3392 39 1 1.3650 6.7557 1.2796 40 1 4.0546 9.8851 0.4608 41 1 5.3587 8.8220 -0.1201 42 1 4.9488 9.7213 2.7679 43 1 6.2528 8.6583 2.1870 44 1 6.3030 11.0401 0.6697 45 1 8.4122 13.6243 0.6824 46 1 5.7141 6.7271 0.6863 47 1 5.0286 6.4260 2.3130 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001104850258.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:19 Heat of formation + Delta-G solvation = 71.420357 kcal Electronic energy + Delta-G solvation = -26731.811837 eV Core-core repulsion = 22952.118587 eV Total energy + Delta-G solvation = -3779.693250 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.54243 -39.97890 -37.97027 -35.89647 -35.04293 -33.07929 -31.92454 -31.74988 -30.86741 -29.95049 -27.13572 -26.53261 -25.11472 -24.62740 -23.12511 -22.36712 -22.08811 -20.65594 -19.77888 -19.76666 -17.85657 -17.02583 -16.65461 -16.54846 -15.93745 -15.65746 -15.01487 -14.95877 -14.67669 -14.56790 -14.10602 -13.55725 -13.41879 -13.32282 -13.25387 -13.06566 -12.95333 -12.91259 -12.61955 -12.42124 -12.18411 -11.86618 -11.69688 -11.30106 -11.18392 -11.04563 -10.90906 -10.77307 -10.76168 -10.43262 -10.33709 -10.22704 -10.12818 -9.89600 -9.61880 -9.59431 -8.80736 -8.68849 -6.85030 -5.70497 -2.98600 0.79535 1.46008 1.61715 2.84830 3.15023 3.48289 3.53156 3.54980 3.79271 3.88461 4.18809 4.29270 4.45249 4.57115 4.62960 4.64288 4.77926 4.81997 4.89762 4.90347 5.10139 5.22445 5.33667 5.39116 5.46376 5.55388 5.56139 5.62483 5.74324 5.80904 5.84926 5.92840 5.96189 5.99192 6.10903 6.15222 6.22454 6.29928 6.36609 6.46066 6.57756 6.93169 6.97175 7.46446 7.60762 7.76439 8.05021 8.48907 9.59731 10.18917 10.53371 11.52580 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.030741 B = 0.002127 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.614504 B =13158.789779 C =13709.116488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.117 3.883 3 N -0.361 5.361 4 C 0.092 3.908 5 C -0.093 4.093 6 C 0.621 3.379 7 O -0.543 6.543 8 N -0.605 5.605 9 C 0.095 3.905 10 C -0.104 4.104 11 H 0.090 0.910 12 C -0.140 4.140 13 C -0.092 4.092 14 H 0.082 0.918 15 C -0.116 4.116 16 C 0.151 3.849 17 N -0.734 5.734 18 C -0.237 4.237 19 H 0.070 0.930 20 C -0.016 4.016 21 N -0.935 5.935 22 Si 0.907 3.093 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.282 1.282 26 C 0.111 3.889 27 N -0.203 5.203 28 N -0.066 5.066 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.099 0.901 33 H 0.105 0.895 34 H 0.205 0.795 35 H 0.106 0.894 36 H 0.071 0.929 37 H 0.058 0.942 38 H 0.055 0.945 39 H 0.051 0.949 40 H 0.067 0.933 41 H 0.065 0.935 42 H 0.017 0.983 43 H 0.019 0.981 44 H 0.383 0.617 45 H 0.254 0.746 46 H 0.079 0.921 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.673 -28.043 -4.180 33.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.003 4.003 3 N -0.147 5.147 4 C -0.065 4.065 5 C -0.232 4.232 6 C 0.407 3.593 7 O -0.420 6.420 8 N -0.337 5.337 9 C -0.028 4.028 10 C -0.124 4.124 11 H 0.108 0.892 12 C -0.197 4.197 13 C -0.112 4.112 14 H 0.100 0.900 15 C -0.154 4.154 16 C 0.023 3.977 17 N -0.378 5.378 18 C -0.368 4.368 19 H 0.088 0.912 20 C -0.212 4.212 21 N -0.584 5.584 22 Si 0.738 3.262 23 H -0.218 1.218 24 H -0.218 1.218 25 H -0.208 1.208 26 C -0.011 4.011 27 N -0.076 5.076 28 N -0.046 5.046 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.117 0.883 33 H 0.124 0.876 34 H 0.221 0.779 35 H 0.124 0.876 36 H 0.089 0.911 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.035 0.965 43 H 0.037 0.963 44 H 0.217 0.783 45 H 0.064 0.936 46 H 0.097 0.903 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -18.087 -28.005 -4.703 33.668 hybrid contribution 1.225 0.205 1.193 1.722 sum -16.861 -27.800 -3.510 32.703 Atomic orbital electron populations 1.22090 0.92656 1.03750 1.04101 1.22055 0.96934 0.76138 1.05191 1.50606 1.31695 1.12380 1.19980 1.23377 0.93105 0.94024 0.95984 1.21420 1.07645 0.94895 0.99283 1.16277 0.80350 0.79898 0.82763 1.90824 1.46882 1.78453 1.25821 1.48701 1.46442 1.09195 1.29360 1.22851 0.98705 0.93909 0.87320 1.22207 0.95334 0.96190 0.98631 0.89218 1.21808 0.95151 1.01846 1.00886 1.22167 0.95849 0.94408 0.98794 0.89955 1.21810 0.98210 0.95805 0.99577 1.20693 0.92412 0.90217 0.94348 1.42373 1.48398 1.31617 1.15434 1.19255 1.15076 1.07971 0.94519 0.91204 1.24742 1.00743 0.98836 0.96878 1.69659 1.44605 1.25170 1.18936 0.86185 0.81112 0.78371 0.80525 1.21765 1.21812 1.20789 1.22573 0.94072 0.83685 1.00750 1.74622 1.04957 1.17703 1.10327 1.81973 1.20595 0.90255 1.11772 0.91666 0.90657 0.89832 0.88272 0.87632 0.77863 0.87566 0.91069 0.92253 0.92642 0.93018 0.91419 0.91630 0.96472 0.96313 0.78335 0.93593 0.90252 0.89682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.45 10.12 37.16 0.38 -0.08 16 2 C 0.12 0.33 7.26 -4.04 -0.03 0.30 16 3 N -0.36 -2.63 3.69 -61.06 -0.23 -2.86 16 4 C 0.09 0.76 11.27 -16.84 -0.19 0.57 16 5 C -0.09 -1.09 6.87 -83.55 -0.57 -1.66 16 6 C 0.62 8.73 7.91 -12.48 -0.10 8.63 16 7 O -0.54 -8.96 17.13 5.28 0.09 -8.87 16 8 N -0.61 -8.12 3.32 -170.55 -0.57 -8.68 16 9 C 0.10 1.10 6.22 -2.41 -0.02 1.09 16 10 C -0.10 -1.18 3.31 -89.22 -0.30 -1.47 16 11 H 0.09 0.97 7.71 -51.93 -0.40 0.57 16 12 C -0.14 -1.46 8.90 37.16 0.33 -1.13 16 13 C -0.09 -1.22 2.71 -89.23 -0.24 -1.46 16 14 H 0.08 1.11 7.71 -51.93 -0.40 0.71 16 15 C -0.12 -1.84 4.51 -26.73 -0.12 -1.96 16 16 C 0.15 3.08 6.13 -4.04 -0.02 3.06 16 17 N -0.73 -19.13 5.60 -59.91 -0.34 -19.46 16 18 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 19 H 0.07 1.96 7.83 -52.48 -0.41 1.55 16 20 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 21 N -0.93 -28.83 13.06 55.49 0.72 -28.11 16 22 Si 0.91 22.94 29.55 -169.99 -5.02 17.92 16 23 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 24 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 25 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 26 C 0.11 1.55 5.87 -2.42 -0.01 1.54 16 27 N -0.20 -2.40 9.35 32.85 0.31 -2.09 16 28 N -0.07 -0.69 13.65 60.35 0.82 0.13 16 29 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.08 0.06 8.14 -51.93 -0.42 -0.37 16 32 H 0.10 0.17 8.14 -51.93 -0.42 -0.25 16 33 H 0.11 0.02 8.08 -51.93 -0.42 -0.40 16 34 H 0.20 1.07 8.06 -52.49 -0.42 0.64 16 35 H 0.11 1.22 5.16 -51.93 -0.27 0.95 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.06 1.05 7.98 -51.93 -0.41 0.63 16 42 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.02 0.39 7.59 -51.93 -0.39 0.00 16 44 H 0.38 10.40 7.67 -40.82 -0.31 10.09 16 45 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 46 H 0.08 1.13 7.75 -51.93 -0.40 0.73 16 47 H 0.08 1.28 7.88 -51.93 -0.41 0.87 16 LS Contribution 386.40 15.07 5.82 5.82 Total: -1.00 -35.59 386.40 -7.14 -42.73 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -7.62 Total: 3.62 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: -1.14 Total: -0.15 kcal Atomic # 7 Polarization: -61.81 SS G_CDS: 0.73 Total: -61.08 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: 0.09 Total: -8.87 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.02 Total: 17.92 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.59 -7.14 -42.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104850258.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.154 kcal (2) G-P(sol) polarization free energy of solvation -35.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds