Wall clock time and date at job start Fri Apr 10 2020 18:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47211 * 2 1 4 4 C 1.53000 * 109.47226 * 120.00630 * 2 1 3 5 5 C 1.52996 * 109.47249 * 175.00032 * 4 2 1 6 6 C 1.50695 * 109.47121 * 179.97438 * 5 4 2 7 7 O 1.21279 * 120.00334 * 359.97438 * 6 5 4 8 8 N 1.34784 * 120.00127 * 179.97438 * 6 5 4 9 9 C 1.47576 * 134.49542 * 180.02562 * 8 6 5 10 10 C 1.53942 * 86.11852 * 155.35966 * 9 8 6 11 11 N 1.46491 * 113.74194 * 137.95195 * 10 9 8 12 12 C 1.35317 * 125.87029 * 277.21898 * 11 10 9 13 13 C 1.35352 * 106.17693 * 180.18381 * 12 11 10 14 14 C 1.50700 * 126.75361 * 179.84844 * 13 12 11 15 15 N 1.46498 * 109.46769 * 94.71485 * 14 13 12 16 16 C 1.36943 * 119.99752 * 179.72432 * 15 14 13 17 17 H 1.08002 * 119.99793 * 0.27665 * 16 15 14 18 18 C 1.38811 * 120.00012 * 180.27737 * 16 15 14 19 19 N 1.31624 * 119.99698 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00072 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47294 * 90.00155 * 20 18 16 22 22 H 1.48499 * 109.47218 * 210.00015 * 20 18 16 23 23 H 1.48496 * 109.47166 * 329.99846 * 20 18 16 24 24 N 1.33772 * 106.49634 * 359.59642 * 13 12 11 25 25 N 1.28636 * 108.88627 * 0.25926 * 24 13 12 26 26 C 1.47807 * 134.45239 * 359.87039 * 8 6 5 27 27 H 1.09005 * 109.47029 * 299.99982 * 1 2 3 28 28 H 1.09001 * 109.47182 * 59.99717 * 1 2 3 29 29 H 1.09001 * 109.47317 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47029 * 240.00018 * 2 1 3 31 31 H 1.08996 * 109.47290 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47278 * 300.00224 * 3 2 1 33 33 H 1.09001 * 109.46921 * 60.00544 * 3 2 1 34 34 H 1.08992 * 109.47141 * 54.99377 * 4 2 1 35 35 H 1.09009 * 109.46463 * 294.99494 * 4 2 1 36 36 H 1.08996 * 109.47120 * 59.99486 * 5 4 2 37 37 H 1.08998 * 109.46940 * 299.99615 * 5 4 2 38 38 H 1.09000 * 113.76645 * 41.05224 * 9 8 6 39 39 H 1.09000 * 113.87057 * 269.67450 * 9 8 6 40 40 H 1.09000 * 113.74068 * 269.15192 * 10 9 8 41 41 H 1.08002 * 126.91295 * 0.03783 * 12 11 10 42 42 H 1.09004 * 109.47210 * 334.71843 * 14 13 12 43 43 H 1.08994 * 109.47121 * 214.71813 * 14 13 12 44 44 H 0.97001 * 120.00384 * 0.02562 * 15 14 13 45 45 H 0.96999 * 119.99739 * 180.02562 * 19 18 16 46 46 H 1.09002 * 113.77031 * 90.37650 * 26 8 6 47 47 H 1.08999 * 113.84046 * 318.91260 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5648 -0.8312 1.1879 6 6 4.0672 -1.5411 2.4185 7 8 3.2829 -1.9214 3.2619 8 7 5.3881 -1.7535 2.5821 9 6 6.2112 -2.3938 3.6262 10 6 7.2532 -2.6236 2.5166 11 7 8.6315 -2.3617 2.9384 12 6 9.2305 -1.1491 2.9819 13 6 10.4919 -1.3672 3.4217 14 6 11.5633 -0.3299 3.6383 15 7 11.5582 0.0917 5.0413 16 6 12.4553 1.0299 5.4775 17 1 13.1637 1.4621 4.7863 18 6 12.4543 1.4252 6.8082 19 7 11.5913 0.8980 7.6506 20 14 13.6776 2.7054 7.4031 21 1 13.0864 4.0600 7.2584 22 1 14.0000 2.4560 8.8311 23 1 14.9190 2.6180 6.5929 24 7 10.5986 -2.6841 3.6316 25 7 9.4793 -3.2449 3.3358 26 6 6.5932 -1.4407 1.7855 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 3.1299 1.4425 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9562 0.8901 34 1 1.6053 -1.7198 1.2950 35 1 1.7517 -0.1584 2.1369 36 1 3.9994 0.1674 1.1420 37 1 3.8531 -1.3940 0.3001 38 1 5.7809 -3.3136 4.0223 39 1 6.5442 -1.7096 4.4067 40 1 7.1409 -3.5766 1.9997 41 1 8.7913 -0.1988 2.7166 42 1 11.3695 0.5316 2.9993 43 1 12.5359 -0.7548 3.3901 44 1 10.9222 -0.2967 5.6622 45 1 11.5903 1.1746 8.5804 46 1 7.0380 -0.4742 2.0226 47 1 6.4674 -1.6012 0.7147 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105157490.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:25 Heat of formation + Delta-G solvation = 102.743668 kcal Electronic energy + Delta-G solvation = -26152.868096 eV Core-core repulsion = 22374.533127 eV Total energy + Delta-G solvation = -3778.334970 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.14892 -40.75617 -38.64656 -36.87881 -35.01970 -33.54539 -31.91196 -31.62427 -29.97837 -29.29133 -27.60278 -27.05948 -25.94327 -24.97327 -23.46407 -22.84248 -21.12902 -20.70686 -20.35885 -19.40211 -18.01776 -17.50902 -17.05750 -16.49800 -16.19613 -15.91959 -15.19132 -14.95245 -14.62776 -14.46666 -14.27544 -13.92185 -13.78579 -13.49152 -13.32324 -13.25089 -13.05703 -12.72693 -12.67078 -12.59414 -12.22968 -12.09678 -11.82273 -11.74559 -11.31050 -11.26048 -11.08882 -11.00083 -10.91638 -10.81750 -10.56582 -10.22954 -10.10295 -9.93859 -9.74939 -9.31621 -8.93285 -8.88213 -6.93317 -5.74958 -3.04917 1.67828 1.89332 2.13737 2.61222 2.84310 3.44972 3.45299 3.50299 3.52463 3.69293 4.15183 4.24720 4.31423 4.41998 4.54596 4.60601 4.63830 4.69959 4.75059 4.80926 4.90371 5.02946 5.08775 5.14182 5.19582 5.21958 5.28092 5.33305 5.39052 5.43562 5.47794 5.58285 5.60094 5.63485 5.75223 5.77709 5.90003 5.97558 6.15029 6.34341 6.60768 6.65384 6.74397 7.07526 7.67901 7.70118 8.42129 8.76061 9.53963 10.09213 10.44861 11.47678 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.014738 B = 0.002208 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.346093 B =12679.346502 C =13672.027522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.098 4.098 3 C -0.152 4.152 4 C -0.101 4.101 5 C -0.136 4.136 6 C 0.542 3.458 7 O -0.530 6.530 8 N -0.646 5.646 9 C 0.103 3.897 10 C 0.113 3.887 11 N -0.295 5.295 12 C -0.046 4.046 13 C 0.000 4.000 14 C 0.232 3.768 15 N -0.726 5.726 16 C -0.241 4.241 17 H 0.073 0.927 18 C -0.013 4.013 19 N -0.931 5.931 20 Si 0.910 3.090 21 H -0.290 1.290 22 H -0.292 1.292 23 H -0.281 1.281 24 N -0.250 5.250 25 N -0.090 5.090 26 C 0.100 3.900 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.145 0.855 41 H 0.188 0.812 42 H 0.038 0.962 43 H 0.040 0.960 44 H 0.385 0.615 45 H 0.255 0.745 46 H 0.104 0.896 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.693 -3.106 -20.398 29.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.116 4.116 3 C -0.209 4.209 4 C -0.139 4.139 5 C -0.176 4.176 6 C 0.332 3.668 7 O -0.405 6.405 8 N -0.384 5.384 9 C -0.021 4.021 10 C 0.009 3.991 11 N -0.090 5.090 12 C -0.196 4.196 13 C -0.138 4.138 14 C 0.103 3.897 15 N -0.371 5.371 16 C -0.372 4.372 17 H 0.091 0.909 18 C -0.209 4.209 19 N -0.580 5.580 20 Si 0.741 3.259 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.207 1.207 24 N -0.118 5.118 25 N -0.069 5.069 26 C -0.024 4.024 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.115 0.885 37 H 0.112 0.888 38 H 0.119 0.881 39 H 0.118 0.882 40 H 0.163 0.837 41 H 0.205 0.795 42 H 0.056 0.944 43 H 0.058 0.942 44 H 0.219 0.781 45 H 0.065 0.935 46 H 0.122 0.878 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -20.992 -4.666 -19.688 29.155 hybrid contribution 0.205 1.719 0.451 1.789 sum -20.786 -2.947 -19.237 28.475 Atomic orbital electron populations 1.21829 0.94955 1.01863 1.01870 1.21144 0.96068 0.96401 0.98005 1.21928 1.01075 0.95927 1.01995 1.21445 0.92388 1.01729 0.98329 1.21734 0.98361 1.01695 0.95761 1.20509 0.79286 0.78567 0.88397 1.90748 1.53754 1.50984 1.45058 1.49785 1.04359 1.60081 1.24210 1.23604 0.86707 0.99489 0.92274 1.23676 0.75713 1.01913 0.97804 1.47118 1.11521 1.06042 1.44288 1.23312 0.95089 0.91142 1.10072 1.22500 0.95773 0.93113 1.02389 1.18966 0.91959 0.89886 0.88924 1.42308 1.42161 1.48814 1.03788 1.19223 1.10522 1.14109 0.93304 0.90858 1.24771 0.99473 1.00537 0.96156 1.69682 1.38352 1.46090 1.03845 0.86152 0.80701 0.81148 0.77940 1.21743 1.21796 1.20655 1.75131 1.13427 1.07117 1.16083 1.78309 0.94992 1.17542 1.16033 1.23684 0.82284 0.98193 0.98282 0.92537 0.92654 0.92620 0.91152 0.92505 0.92650 0.92497 0.91081 0.90997 0.88451 0.88769 0.88122 0.88237 0.83722 0.79456 0.94424 0.94244 0.78105 0.93490 0.87802 0.87771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.19 37.16 0.34 -0.43 16 2 C -0.10 -0.51 2.92 -90.62 -0.26 -0.77 16 3 C -0.15 -0.75 8.95 37.16 0.33 -0.42 16 4 C -0.10 -0.68 3.97 -26.73 -0.11 -0.79 16 5 C -0.14 -0.81 5.20 -27.89 -0.15 -0.96 16 6 C 0.54 5.23 8.06 -10.98 -0.09 5.14 16 7 O -0.53 -7.40 16.71 5.56 0.09 -7.31 16 8 N -0.65 -5.29 3.61 -178.36 -0.64 -5.94 16 9 C 0.10 0.95 8.64 -2.97 -0.03 0.92 16 10 C 0.11 0.90 5.13 -70.16 -0.36 0.54 16 11 N -0.29 -3.71 3.54 -56.32 -0.20 -3.91 16 12 C -0.05 -0.63 10.72 -17.04 -0.18 -0.81 16 13 C 0.00 0.00 6.61 -82.78 -0.55 -0.55 16 14 C 0.23 4.70 6.82 -5.19 -0.04 4.66 16 15 N -0.73 -18.63 5.59 -61.09 -0.34 -18.97 16 16 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 17 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 18 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 19 N -0.93 -28.56 13.06 55.49 0.72 -27.83 16 20 Si 0.91 22.38 29.55 -169.99 -5.02 17.36 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 N -0.25 -4.89 12.41 33.29 0.41 -4.48 16 25 N -0.09 -1.51 13.17 60.35 0.79 -0.71 16 26 C 0.10 0.54 8.00 -2.85 -0.02 0.52 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.25 6.56 -51.93 -0.34 -0.09 16 32 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.07 0.55 8.10 -51.93 -0.42 0.13 16 35 H 0.07 0.59 8.10 -51.92 -0.42 0.17 16 36 H 0.10 0.47 6.56 -51.93 -0.34 0.13 16 37 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 40 H 0.15 0.92 8.14 -51.93 -0.42 0.49 16 41 H 0.19 1.86 6.74 -52.49 -0.35 1.51 16 42 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 44 H 0.39 10.71 7.66 -40.82 -0.31 10.40 16 45 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 46 H 0.10 0.52 6.31 -51.93 -0.33 0.19 16 47 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 LS Contribution 390.70 15.07 5.89 5.89 Total: -1.00 -36.31 390.70 -7.21 -43.51 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -7.56 Total: 2.67 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: -1.35 Total: -0.28 kcal Atomic # 7 Polarization: -62.59 SS G_CDS: 0.75 Total: -61.84 kcal Atomic # 8 Polarization: -7.40 SS G_CDS: 0.09 Total: -7.31 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -36.31 -7.21 -43.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105157490.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.256 kcal (2) G-P(sol) polarization free energy of solvation -36.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds