Wall clock time and date at job start Fri Apr 10 2020 18:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47211 * 2 1 4 4 C 1.53000 * 109.47226 * 120.00630 * 2 1 3 5 5 C 1.52996 * 109.47249 * 175.00032 * 4 2 1 6 6 C 1.50695 * 109.47121 * 179.97438 * 5 4 2 7 7 O 1.21279 * 120.00334 * 359.97438 * 6 5 4 8 8 N 1.34784 * 120.00127 * 179.97438 * 6 5 4 9 9 C 1.47576 * 134.49542 * 180.02562 * 8 6 5 10 10 C 1.53942 * 86.11852 * 155.35966 * 9 8 6 11 11 N 1.46491 * 113.74194 * 137.95195 * 10 9 8 12 12 C 1.35317 * 125.87029 * 277.21898 * 11 10 9 13 13 C 1.35352 * 106.17693 * 180.18381 * 12 11 10 14 14 C 1.50700 * 126.75361 * 179.84844 * 13 12 11 15 15 N 1.46498 * 109.46769 * 94.71485 * 14 13 12 16 16 C 1.36943 * 119.99752 * 179.72432 * 15 14 13 17 17 H 1.08002 * 119.99793 * 0.27665 * 16 15 14 18 18 C 1.38811 * 120.00012 * 180.27737 * 16 15 14 19 19 N 1.31624 * 119.99698 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00072 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47294 * 90.00155 * 20 18 16 22 22 H 1.48499 * 109.47218 * 210.00015 * 20 18 16 23 23 H 1.48496 * 109.47166 * 329.99846 * 20 18 16 24 24 N 1.33772 * 106.49634 * 359.59642 * 13 12 11 25 25 N 1.28636 * 108.88627 * 0.25926 * 24 13 12 26 26 C 1.47807 * 134.45239 * 359.87039 * 8 6 5 27 27 H 1.09005 * 109.47029 * 299.99982 * 1 2 3 28 28 H 1.09001 * 109.47182 * 59.99717 * 1 2 3 29 29 H 1.09001 * 109.47317 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47029 * 240.00018 * 2 1 3 31 31 H 1.08996 * 109.47290 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47278 * 300.00224 * 3 2 1 33 33 H 1.09001 * 109.46921 * 60.00544 * 3 2 1 34 34 H 1.08992 * 109.47141 * 54.99377 * 4 2 1 35 35 H 1.09009 * 109.46463 * 294.99494 * 4 2 1 36 36 H 1.08996 * 109.47120 * 59.99486 * 5 4 2 37 37 H 1.08998 * 109.46940 * 299.99615 * 5 4 2 38 38 H 1.09000 * 113.76645 * 41.05224 * 9 8 6 39 39 H 1.09000 * 113.87057 * 269.67450 * 9 8 6 40 40 H 1.09000 * 113.74068 * 269.15192 * 10 9 8 41 41 H 1.08002 * 126.91295 * 0.03783 * 12 11 10 42 42 H 1.09004 * 109.47210 * 334.71843 * 14 13 12 43 43 H 1.08994 * 109.47121 * 214.71813 * 14 13 12 44 44 H 0.97001 * 120.00384 * 0.02562 * 15 14 13 45 45 H 0.96999 * 119.99739 * 180.02562 * 19 18 16 46 46 H 1.09002 * 113.77031 * 90.37650 * 26 8 6 47 47 H 1.08999 * 113.84046 * 318.91260 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5648 -0.8312 1.1879 6 6 4.0672 -1.5411 2.4185 7 8 3.2829 -1.9214 3.2619 8 7 5.3881 -1.7535 2.5821 9 6 6.2112 -2.3938 3.6262 10 6 7.2532 -2.6236 2.5166 11 7 8.6315 -2.3617 2.9384 12 6 9.2305 -1.1491 2.9819 13 6 10.4919 -1.3672 3.4217 14 6 11.5633 -0.3299 3.6383 15 7 11.5582 0.0917 5.0413 16 6 12.4553 1.0299 5.4775 17 1 13.1637 1.4621 4.7863 18 6 12.4543 1.4252 6.8082 19 7 11.5913 0.8980 7.6506 20 14 13.6776 2.7054 7.4031 21 1 13.0864 4.0600 7.2584 22 1 14.0000 2.4560 8.8311 23 1 14.9190 2.6180 6.5929 24 7 10.5986 -2.6841 3.6316 25 7 9.4793 -3.2449 3.3358 26 6 6.5932 -1.4407 1.7855 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 3.1299 1.4425 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9562 0.8901 34 1 1.6053 -1.7198 1.2950 35 1 1.7517 -0.1584 2.1369 36 1 3.9994 0.1674 1.1420 37 1 3.8531 -1.3940 0.3001 38 1 5.7809 -3.3136 4.0223 39 1 6.5442 -1.7096 4.4067 40 1 7.1409 -3.5766 1.9997 41 1 8.7913 -0.1988 2.7166 42 1 11.3695 0.5316 2.9993 43 1 12.5359 -0.7548 3.3901 44 1 10.9222 -0.2967 5.6622 45 1 11.5903 1.1746 8.5804 46 1 7.0380 -0.4742 2.0226 47 1 6.4674 -1.6012 0.7147 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105157490.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:24 Heat of formation + Delta-G solvation = 77.013398 kcal Electronic energy + Delta-G solvation = -26153.983844 eV Core-core repulsion = 22374.533127 eV Total energy + Delta-G solvation = -3779.450718 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -44.31041 -41.47794 -39.38032 -37.39382 -36.78442 -34.78259 -33.57925 -32.24582 -31.62095 -30.04141 -27.97909 -27.85329 -27.43648 -25.74912 -24.75031 -24.23752 -22.34158 -21.74595 -20.79651 -20.04980 -19.40058 -18.69218 -18.10543 -17.44369 -16.85793 -16.80488 -16.54065 -16.04362 -15.77951 -15.45988 -15.15273 -15.04939 -14.82925 -14.47248 -14.31476 -14.14981 -13.91280 -13.82305 -13.56053 -13.31530 -13.05578 -12.96199 -12.76925 -12.67179 -12.59188 -12.48451 -12.23343 -12.07986 -11.86603 -11.80831 -11.69203 -11.50793 -11.43929 -11.09830 -10.96364 -10.92541 -10.21308 -10.00172 -8.99872 -7.92072 -5.22065 0.56866 1.08193 1.43787 1.46897 1.52799 1.53429 1.62055 1.86521 2.60801 2.79136 3.06240 3.39423 3.45738 3.60836 3.69310 3.86113 3.95175 3.98768 4.08416 4.17466 4.22117 4.25251 4.33464 4.34702 4.41404 4.46260 4.54453 4.60932 4.68433 4.69959 4.82258 4.87751 4.90029 4.96300 5.08798 5.15276 5.15534 5.20173 5.21260 5.34565 5.49624 5.53213 5.55622 5.64963 6.27733 6.42620 6.97600 7.34647 7.52205 8.06965 8.31703 9.31800 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.014738 B = 0.002208 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.346093 B =12679.346502 C =13672.027522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.092 4.092 3 C -0.152 4.152 4 C -0.099 4.099 5 C -0.126 4.126 6 C 0.536 3.464 7 O -0.585 6.585 8 N -0.644 5.644 9 C 0.092 3.908 10 C 0.109 3.891 11 N -0.277 5.277 12 C -0.015 4.015 13 C -0.036 4.036 14 C 0.234 3.766 15 N -0.740 5.740 16 C -0.240 4.240 17 H 0.086 0.914 18 C -0.080 4.080 19 N -0.974 5.974 20 Si 0.978 3.022 21 H -0.283 1.283 22 H -0.301 1.301 23 H -0.267 1.267 24 N -0.297 5.297 25 N -0.109 5.109 26 C 0.112 3.888 27 H 0.046 0.954 28 H 0.063 0.937 29 H 0.052 0.948 30 H 0.086 0.914 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.045 0.955 34 H 0.056 0.944 35 H 0.048 0.952 36 H 0.117 0.883 37 H 0.126 0.874 38 H 0.094 0.906 39 H 0.082 0.918 40 H 0.167 0.833 41 H 0.231 0.769 42 H 0.068 0.932 43 H 0.029 0.971 44 H 0.370 0.630 45 H 0.249 0.751 46 H 0.117 0.883 47 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.873 -1.731 -23.652 31.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.110 4.110 3 C -0.210 4.210 4 C -0.138 4.138 5 C -0.165 4.165 6 C 0.329 3.671 7 O -0.465 6.465 8 N -0.380 5.380 9 C -0.032 4.032 10 C 0.007 3.993 11 N -0.072 5.072 12 C -0.167 4.167 13 C -0.174 4.174 14 C 0.106 3.894 15 N -0.383 5.383 16 C -0.372 4.372 17 H 0.104 0.896 18 C -0.272 4.272 19 N -0.625 5.625 20 Si 0.807 3.193 21 H -0.210 1.210 22 H -0.228 1.228 23 H -0.191 1.191 24 N -0.164 5.164 25 N -0.087 5.087 26 C -0.010 4.010 27 H 0.065 0.935 28 H 0.082 0.918 29 H 0.072 0.928 30 H 0.104 0.896 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.135 0.865 37 H 0.144 0.856 38 H 0.112 0.888 39 H 0.100 0.900 40 H 0.184 0.816 41 H 0.247 0.753 42 H 0.085 0.915 43 H 0.047 0.953 44 H 0.201 0.799 45 H 0.058 0.942 46 H 0.135 0.865 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -21.146 -3.305 -23.024 31.435 hybrid contribution 0.160 1.224 1.395 1.862 sum -20.986 -2.082 -21.629 30.209 Atomic orbital electron populations 1.21859 0.95383 1.01734 1.01836 1.21114 0.95752 0.96591 0.97569 1.21939 1.01781 0.95488 1.01757 1.21394 0.93386 1.00716 0.98255 1.21785 0.97336 1.02615 0.94811 1.21253 0.79151 0.77884 0.88858 1.90728 1.55246 1.53354 1.47134 1.49813 1.04690 1.59409 1.24126 1.23557 0.87711 0.99138 0.92795 1.24138 0.72787 1.04626 0.97727 1.47417 1.12384 1.05232 1.42122 1.23754 0.93382 0.92615 1.06917 1.22311 0.97280 0.92459 1.05372 1.19009 0.92584 0.91429 0.86355 1.42535 1.41404 1.48453 1.05860 1.19707 1.10299 1.13565 0.93583 0.89585 1.25646 1.01739 1.03231 0.96593 1.69860 1.40632 1.48192 1.03782 0.85064 0.78870 0.78646 0.76711 1.20979 1.22829 1.19132 1.75059 1.15278 1.08287 1.17770 1.78203 0.95087 1.18389 1.17060 1.23950 0.79707 0.97284 1.00078 0.93479 0.91788 0.92840 0.89593 0.91367 0.92052 0.93620 0.92569 0.93331 0.86462 0.85601 0.88781 0.89965 0.81579 0.75272 0.91476 0.95347 0.79908 0.94200 0.86505 0.83373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.19 71.98 0.66 -0.76 16 2 C -0.09 -0.76 2.92 -10.80 -0.03 -0.79 16 3 C -0.15 -1.14 8.95 71.98 0.64 -0.50 16 4 C -0.10 -1.23 3.97 30.59 0.12 -1.11 16 5 C -0.13 -1.11 5.20 29.85 0.16 -0.96 16 6 C 0.54 9.46 8.06 87.65 0.71 10.17 16 7 O -0.59 -16.59 16.71 -3.03 -0.05 -16.64 16 8 N -0.64 -8.87 3.61 -836.60 -3.02 -11.89 16 9 C 0.09 1.60 8.64 86.49 0.75 2.34 16 10 C 0.11 1.42 5.13 46.74 0.24 1.66 16 11 N -0.28 -6.35 3.54 -332.09 -1.18 -7.53 16 12 C -0.02 -0.38 10.72 83.49 0.89 0.52 16 13 C -0.04 -1.26 6.61 41.60 0.28 -0.99 16 14 C 0.23 9.28 6.82 85.63 0.58 9.86 16 15 N -0.74 -38.04 5.59 -347.18 -1.94 -39.98 16 16 C -0.24 -13.28 9.99 84.03 0.84 -12.45 16 17 H 0.09 4.44 7.83 -2.91 -0.02 4.41 16 18 C -0.08 -4.64 5.50 84.86 0.47 -4.18 16 19 N -0.97 -60.91 13.06 21.65 0.28 -60.62 16 20 Si 0.98 46.12 29.55 68.60 2.03 48.14 16 21 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 22 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 23 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 24 N -0.30 -11.68 12.41 -48.60 -0.60 -12.29 16 25 N -0.11 -3.57 13.17 37.02 0.49 -3.08 16 26 C 0.11 0.68 8.00 86.44 0.69 1.37 16 27 H 0.05 0.52 8.14 -2.38 -0.02 0.50 16 28 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.09 0.48 8.14 -2.38 -0.02 0.46 16 31 H 0.07 0.35 6.56 -2.39 -0.02 0.34 16 32 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 33 H 0.04 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.06 0.85 8.10 -2.39 -0.02 0.83 16 35 H 0.05 0.82 8.10 -2.38 -0.02 0.80 16 36 H 0.12 0.62 6.56 -2.39 -0.02 0.61 16 37 H 0.13 0.37 8.14 -2.39 -0.02 0.35 16 38 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.17 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.23 3.42 6.74 -2.91 -0.02 3.40 16 42 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 43 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.37 20.99 7.66 -92.71 -0.71 20.28 16 45 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 46 H 0.12 0.50 6.31 -2.39 -0.02 0.49 16 47 H 0.15 -0.25 8.14 -2.39 -0.02 -0.27 16 Total: -1.00 -83.35 390.70 3.26 -80.09 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: 0.26 Total: 19.60 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: 7.00 Total: 4.20 kcal Atomic # 7 Polarization: -129.42 SS G_CDS: -5.97 Total: -135.39 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: -0.05 Total: -16.64 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.14 kcal Total: -83.35 3.26 -80.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105157490.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.099 kcal (2) G-P(sol) polarization free energy of solvation -83.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds