Wall clock time and date at job start Fri Apr 10 2020 18:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.46898 * 2 1 4 4 C 1.53001 * 109.47259 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.47399 * 305.00322 * 4 3 2 6 6 C 1.53002 * 109.47050 * 65.00034 * 4 3 2 7 7 C 1.50699 * 109.47432 * 184.99921 * 4 3 2 8 8 O 1.21285 * 119.99717 * 0.02562 * 7 4 3 9 9 N 1.34777 * 120.00128 * 179.97438 * 7 4 3 10 10 C 1.47587 * 134.49194 * 180.02562 * 9 7 4 11 11 C 1.53947 * 86.11492 * 155.35831 * 10 9 7 12 12 N 1.46494 * 113.73833 * 137.94973 * 11 10 9 13 13 C 1.35317 * 125.87155 * 275.32706 * 12 11 10 14 14 C 1.35352 * 106.17693 * 180.11507 * 13 12 11 15 15 C 1.50700 * 126.75361 * 179.84844 * 14 13 12 16 16 N 1.46498 * 109.46769 * 94.71485 * 15 14 13 17 17 C 1.36943 * 119.99752 * 179.72432 * 16 15 14 18 18 H 1.08002 * 119.99793 * 0.27665 * 17 16 15 19 19 C 1.38811 * 120.00012 * 180.27737 * 17 16 15 20 20 N 1.31624 * 119.99698 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00072 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47213 * 60.00246 * 21 19 17 23 23 H 1.48502 * 109.47317 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47081 * 299.99875 * 21 19 17 25 25 N 1.33772 * 106.49634 * 359.59642 * 14 13 12 26 26 N 1.28636 * 108.88627 * 0.25926 * 25 14 13 27 27 C 1.47585 * 134.49454 * 0.02562 * 9 7 4 28 28 H 1.09006 * 109.46820 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47404 * 299.99338 * 1 2 3 30 30 H 1.08995 * 109.47294 * 59.99990 * 1 2 3 31 31 H 1.09001 * 109.47404 * 240.00662 * 2 1 3 32 32 H 1.09004 * 109.47892 * 120.00009 * 2 1 3 33 33 H 1.08999 * 109.47269 * 60.00334 * 3 2 1 34 34 H 1.08995 * 109.47157 * 300.00094 * 3 2 1 35 35 H 1.08998 * 109.47021 * 300.00229 * 6 4 3 36 36 H 1.08996 * 109.47067 * 60.00471 * 6 4 3 37 37 H 1.08998 * 109.47053 * 180.02562 * 6 4 3 38 38 H 1.09000 * 113.76791 * 41.06228 * 10 9 7 39 39 H 1.08999 * 113.76608 * 269.66150 * 10 9 7 40 40 H 1.08997 * 113.74241 * 269.15464 * 11 10 9 41 41 H 1.08002 * 126.91295 * 359.96910 * 13 12 11 42 42 H 1.09004 * 109.47210 * 334.71843 * 15 14 13 43 43 H 1.08994 * 109.47121 * 214.71813 * 15 14 13 44 44 H 0.97001 * 120.00384 * 0.02562 * 16 15 14 45 45 H 0.96999 * 119.99739 * 180.02562 * 20 19 17 46 46 H 1.08992 * 113.76674 * 90.33680 * 27 9 7 47 47 H 1.09002 * 113.76315 * 318.94269 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9337 0.8530 0.8409 6 6 4.0794 0.8332 -1.3083 7 6 4.0722 2.8580 0.1232 8 8 3.2841 3.7763 0.2044 9 7 5.3973 3.1033 0.1446 10 6 6.2218 4.3227 0.2518 11 6 7.3215 3.4035 0.8137 12 7 8.6592 3.6987 0.2945 13 6 9.1800 3.2345 -0.8649 14 6 10.4291 3.7488 -0.9499 15 6 11.4231 3.5244 -2.0602 16 7 11.3229 4.6152 -3.0329 17 6 12.1383 4.6286 -4.1330 18 1 12.8522 3.8326 -4.2857 19 6 12.0474 5.6651 -5.0518 20 7 11.1778 6.6354 -4.8653 21 14 13.1592 5.6830 -6.5528 22 1 12.9161 4.4627 -7.3634 23 1 12.8673 6.8875 -7.3708 24 1 14.5786 5.7132 -6.1171 25 7 10.6057 4.4999 0.1429 26 7 9.5389 4.4494 0.8598 27 6 6.6066 2.2606 0.0704 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6765 1.9563 -0.8899 35 1 3.7160 -0.1905 -1.3979 36 1 3.7157 1.4228 -2.1498 37 1 5.1693 0.8329 -1.3086 38 1 5.8435 5.0469 0.9733 39 1 6.4720 4.7697 -0.7104 40 1 7.2990 3.3052 1.8990 41 1 8.6971 2.5825 -1.5778 42 1 11.2086 2.5766 -2.5538 43 1 12.4308 3.4984 -1.6458 44 1 10.6820 5.3303 -2.8956 45 1 11.1140 7.3596 -5.5076 46 1 6.9698 2.1019 -0.9449 47 1 6.5353 1.3384 0.6471 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105196965.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:34 Heat of formation + Delta-G solvation = 104.604797 kcal Electronic energy + Delta-G solvation = -26491.536697 eV Core-core repulsion = 22713.282432 eV Total energy + Delta-G solvation = -3778.254265 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.15083 -40.89888 -38.70066 -36.32816 -35.02082 -33.59582 -32.52322 -31.84857 -29.97972 -29.35020 -27.27784 -26.84124 -25.91234 -24.79747 -23.33150 -22.83757 -21.40184 -20.93779 -20.52760 -19.36795 -17.90994 -17.55784 -17.06312 -16.54441 -16.08034 -15.90626 -15.25210 -14.91249 -14.59029 -14.52417 -14.13081 -13.94781 -13.80907 -13.55418 -13.35315 -13.19604 -13.00769 -12.72026 -12.69560 -12.62600 -12.31011 -12.09519 -11.79682 -11.67618 -11.38542 -11.31864 -11.27888 -10.95892 -10.91234 -10.80401 -10.54236 -10.15729 -10.10938 -9.93107 -9.74464 -9.31160 -8.92957 -8.87585 -6.93207 -5.74635 -3.04645 1.68211 1.89635 2.13005 2.61930 2.84507 3.43309 3.45769 3.50276 3.51479 3.66989 4.12294 4.23873 4.26603 4.43029 4.59750 4.63007 4.66510 4.71181 4.72162 4.79997 4.81405 4.94058 5.08748 5.15399 5.18950 5.24055 5.30692 5.34715 5.36434 5.43613 5.46551 5.54116 5.60269 5.63396 5.74866 5.75439 5.86595 5.95938 6.15257 6.34530 6.60957 6.65509 6.74545 7.07969 7.67846 7.69781 8.42457 8.76282 9.54182 10.09447 10.45131 11.47921 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.015900 B = 0.002314 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.615974 B =12097.899332 C =13013.716003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.102 4.102 4 C -0.104 4.104 5 H 0.098 0.902 6 C -0.149 4.149 7 C 0.547 3.453 8 O -0.529 6.529 9 N -0.643 5.643 10 C 0.103 3.897 11 C 0.113 3.887 12 N -0.295 5.295 13 C -0.046 4.046 14 C 0.000 4.000 15 C 0.232 3.768 16 N -0.726 5.726 17 C -0.241 4.241 18 H 0.073 0.927 19 C -0.013 4.013 20 N -0.932 5.932 21 Si 0.910 3.090 22 H -0.286 1.286 23 H -0.292 1.292 24 H -0.285 1.285 25 N -0.250 5.250 26 N -0.090 5.090 27 C 0.100 3.900 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.101 0.899 39 H 0.100 0.900 40 H 0.145 0.855 41 H 0.188 0.812 42 H 0.038 0.962 43 H 0.040 0.960 44 H 0.385 0.615 45 H 0.256 0.744 46 H 0.104 0.896 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.075 -17.156 12.745 28.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.140 4.140 4 C -0.125 4.125 5 H 0.116 0.884 6 C -0.206 4.206 7 C 0.337 3.663 8 O -0.404 6.404 9 N -0.381 5.381 10 C -0.021 4.021 11 C 0.009 3.991 12 N -0.090 5.090 13 C -0.196 4.196 14 C -0.138 4.138 15 C 0.103 3.897 16 N -0.371 5.371 17 C -0.372 4.372 18 H 0.091 0.909 19 C -0.209 4.209 20 N -0.580 5.580 21 Si 0.741 3.259 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.212 1.212 25 N -0.118 5.118 26 N -0.069 5.069 27 C -0.025 4.025 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.119 0.881 39 H 0.118 0.882 40 H 0.163 0.837 41 H 0.205 0.795 42 H 0.056 0.944 43 H 0.057 0.943 44 H 0.219 0.781 45 H 0.066 0.934 46 H 0.122 0.878 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -19.314 -15.842 13.890 28.582 hybrid contribution 0.073 -0.292 -1.720 1.746 sum -19.241 -16.134 12.170 27.904 Atomic orbital electron populations 1.21761 0.95621 1.01607 1.02063 1.21595 0.96180 0.96367 1.02147 1.21471 0.91819 0.96993 1.03742 1.21314 0.97961 0.92424 1.00848 0.88400 1.21887 1.01381 1.01672 0.95707 1.20454 0.79260 0.91714 0.74871 1.90744 1.53610 1.46853 1.49196 1.49683 1.03965 1.10154 1.74275 1.23616 0.85757 0.90057 1.02628 1.23693 0.76672 0.97431 1.01331 1.47116 1.12991 1.33105 1.15739 1.23309 0.96635 1.07477 0.92201 1.22499 0.95613 0.98401 0.97257 1.18965 0.93082 0.92736 0.84948 1.42299 1.45720 1.25531 1.23503 1.19178 1.13473 1.06114 0.98471 0.90916 1.24768 0.99570 0.97205 0.99353 1.69671 1.38046 1.12779 1.37491 0.86229 0.80268 0.76791 0.82636 1.21237 1.21747 1.21171 1.75131 1.15164 1.17422 1.04045 1.78309 0.94647 1.12255 1.21658 1.23661 0.81500 0.95399 1.01890 0.92712 0.92676 0.92616 0.91604 0.91987 0.91020 0.91116 0.90831 0.91816 0.92022 0.88094 0.88239 0.83735 0.79477 0.94431 0.94255 0.78105 0.93438 0.87801 0.87784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.91 37.15 0.37 -0.44 16 2 C -0.13 -0.65 5.69 -26.73 -0.15 -0.80 16 3 C -0.10 -0.72 4.03 -26.73 -0.11 -0.82 16 4 C -0.10 -0.68 2.55 -91.77 -0.23 -0.91 16 5 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 6 C -0.15 -0.80 8.83 37.16 0.33 -0.47 16 7 C 0.55 5.41 7.38 -10.99 -0.08 5.33 16 8 O -0.53 -7.47 16.65 5.55 0.09 -7.38 16 9 N -0.64 -5.34 3.57 -178.53 -0.64 -5.98 16 10 C 0.10 0.95 8.64 -2.97 -0.03 0.92 16 11 C 0.11 0.91 5.15 -70.14 -0.36 0.54 16 12 N -0.29 -3.71 3.54 -56.30 -0.20 -3.91 16 13 C -0.05 -0.63 10.72 -17.04 -0.18 -0.81 16 14 C 0.00 0.00 6.61 -82.78 -0.55 -0.55 16 15 C 0.23 4.70 6.82 -5.19 -0.04 4.66 16 16 N -0.73 -18.62 5.59 -61.09 -0.34 -18.96 16 17 C -0.24 -6.73 9.99 -15.06 -0.15 -6.88 16 18 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 19 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 20 N -0.93 -28.54 13.06 55.49 0.72 -27.82 16 21 Si 0.91 22.37 29.55 -169.99 -5.02 17.34 16 22 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 N -0.25 -4.89 12.41 33.29 0.41 -4.48 16 26 N -0.09 -1.50 13.17 60.35 0.79 -0.71 16 27 C 0.10 0.56 6.24 -2.97 -0.02 0.54 16 28 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.07 0.30 6.56 -51.93 -0.34 -0.04 16 32 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.07 0.58 7.95 -51.93 -0.41 0.17 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.30 6.56 -51.93 -0.34 -0.04 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.28 6.14 -51.93 -0.32 -0.03 16 38 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.15 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.19 1.86 6.72 -52.49 -0.35 1.51 16 42 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.39 10.70 7.66 -40.82 -0.31 10.39 16 45 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 46 H 0.10 0.54 6.13 -51.93 -0.32 0.22 16 47 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 LS Contribution 386.64 15.07 5.83 5.83 Total: -1.00 -36.14 386.64 -7.09 -43.23 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -7.44 Total: 2.97 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: -1.30 Total: -0.14 kcal Atomic # 7 Polarization: -62.61 SS G_CDS: 0.75 Total: -61.85 kcal Atomic # 8 Polarization: -7.47 SS G_CDS: 0.09 Total: -7.38 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.14 -7.09 -43.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105196965.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.830 kcal (2) G-P(sol) polarization free energy of solvation -36.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds