Wall clock time and date at job start Fri Apr 10 2020 18:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.46898 * 2 1 4 4 C 1.53001 * 109.47259 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.47399 * 305.00322 * 4 3 2 6 6 C 1.53002 * 109.47050 * 65.00034 * 4 3 2 7 7 C 1.50699 * 109.47432 * 184.99921 * 4 3 2 8 8 O 1.21285 * 119.99717 * 0.02562 * 7 4 3 9 9 N 1.34777 * 120.00128 * 179.97438 * 7 4 3 10 10 C 1.47587 * 134.49194 * 180.02562 * 9 7 4 11 11 C 1.53947 * 86.11492 * 155.35831 * 10 9 7 12 12 N 1.46494 * 113.73833 * 137.94973 * 11 10 9 13 13 C 1.35317 * 125.87155 * 275.32706 * 12 11 10 14 14 C 1.35352 * 106.17693 * 180.11507 * 13 12 11 15 15 C 1.50700 * 126.75361 * 179.84844 * 14 13 12 16 16 N 1.46498 * 109.46769 * 94.71485 * 15 14 13 17 17 C 1.36943 * 119.99752 * 179.72432 * 16 15 14 18 18 H 1.08002 * 119.99793 * 0.27665 * 17 16 15 19 19 C 1.38811 * 120.00012 * 180.27737 * 17 16 15 20 20 N 1.31624 * 119.99698 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00072 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47213 * 60.00246 * 21 19 17 23 23 H 1.48502 * 109.47317 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47081 * 299.99875 * 21 19 17 25 25 N 1.33772 * 106.49634 * 359.59642 * 14 13 12 26 26 N 1.28636 * 108.88627 * 0.25926 * 25 14 13 27 27 C 1.47585 * 134.49454 * 0.02562 * 9 7 4 28 28 H 1.09006 * 109.46820 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47404 * 299.99338 * 1 2 3 30 30 H 1.08995 * 109.47294 * 59.99990 * 1 2 3 31 31 H 1.09001 * 109.47404 * 240.00662 * 2 1 3 32 32 H 1.09004 * 109.47892 * 120.00009 * 2 1 3 33 33 H 1.08999 * 109.47269 * 60.00334 * 3 2 1 34 34 H 1.08995 * 109.47157 * 300.00094 * 3 2 1 35 35 H 1.08998 * 109.47021 * 300.00229 * 6 4 3 36 36 H 1.08996 * 109.47067 * 60.00471 * 6 4 3 37 37 H 1.08998 * 109.47053 * 180.02562 * 6 4 3 38 38 H 1.09000 * 113.76791 * 41.06228 * 10 9 7 39 39 H 1.08999 * 113.76608 * 269.66150 * 10 9 7 40 40 H 1.08997 * 113.74241 * 269.15464 * 11 10 9 41 41 H 1.08002 * 126.91295 * 359.96910 * 13 12 11 42 42 H 1.09004 * 109.47210 * 334.71843 * 15 14 13 43 43 H 1.08994 * 109.47121 * 214.71813 * 15 14 13 44 44 H 0.97001 * 120.00384 * 0.02562 * 16 15 14 45 45 H 0.96999 * 119.99739 * 180.02562 * 20 19 17 46 46 H 1.08992 * 113.76674 * 90.33680 * 27 9 7 47 47 H 1.09002 * 113.76315 * 318.94269 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9337 0.8530 0.8409 6 6 4.0794 0.8332 -1.3083 7 6 4.0722 2.8580 0.1232 8 8 3.2841 3.7763 0.2044 9 7 5.3973 3.1033 0.1446 10 6 6.2218 4.3227 0.2518 11 6 7.3215 3.4035 0.8137 12 7 8.6592 3.6987 0.2945 13 6 9.1800 3.2345 -0.8649 14 6 10.4291 3.7488 -0.9499 15 6 11.4231 3.5244 -2.0602 16 7 11.3229 4.6152 -3.0329 17 6 12.1383 4.6286 -4.1330 18 1 12.8522 3.8326 -4.2857 19 6 12.0474 5.6651 -5.0518 20 7 11.1778 6.6354 -4.8653 21 14 13.1592 5.6830 -6.5528 22 1 12.9161 4.4627 -7.3634 23 1 12.8673 6.8875 -7.3708 24 1 14.5786 5.7132 -6.1171 25 7 10.6057 4.4999 0.1429 26 7 9.5389 4.4494 0.8598 27 6 6.6066 2.2606 0.0704 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6765 1.9563 -0.8899 35 1 3.7160 -0.1905 -1.3979 36 1 3.7157 1.4228 -2.1498 37 1 5.1693 0.8329 -1.3086 38 1 5.8435 5.0469 0.9733 39 1 6.4720 4.7697 -0.7104 40 1 7.2990 3.3052 1.8990 41 1 8.6971 2.5825 -1.5778 42 1 11.2086 2.5766 -2.5538 43 1 12.4308 3.4984 -1.6458 44 1 10.6820 5.3303 -2.8956 45 1 11.1140 7.3596 -5.5076 46 1 6.9698 2.1019 -0.9449 47 1 6.5353 1.3384 0.6471 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105196965.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:33 Heat of formation + Delta-G solvation = 78.809560 kcal Electronic energy + Delta-G solvation = -26492.655262 eV Core-core repulsion = 22713.282432 eV Total energy + Delta-G solvation = -3779.372830 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.31435 -41.63164 -39.45307 -36.91124 -36.78196 -34.80947 -33.60152 -33.00734 -31.62128 -30.14694 -27.92793 -27.60353 -27.27061 -25.63336 -24.73785 -24.03405 -22.36943 -21.95482 -21.30242 -20.02516 -19.37707 -18.59676 -18.18193 -17.46133 -16.96580 -16.64459 -16.47442 -16.10665 -15.82181 -15.46165 -15.17341 -15.03705 -14.70421 -14.62822 -14.28447 -14.19858 -13.95807 -13.71351 -13.52389 -13.32848 -13.16075 -12.97284 -12.74422 -12.71801 -12.61928 -12.48754 -12.17475 -12.11839 -11.87531 -11.85986 -11.80258 -11.73110 -11.41002 -11.07189 -10.92781 -10.84016 -10.21457 -10.01596 -8.99611 -7.91614 -5.21669 0.56859 1.07254 1.40264 1.46889 1.52915 1.54982 1.60966 1.85553 2.61131 2.75657 3.03204 3.39049 3.44671 3.57085 3.68622 3.77234 3.93078 3.96699 4.10130 4.18179 4.25326 4.25788 4.31363 4.34218 4.37310 4.39788 4.50230 4.53536 4.65790 4.69216 4.80302 4.89899 4.90168 4.93652 5.02645 5.12122 5.15332 5.21211 5.23750 5.30488 5.43466 5.51002 5.53178 5.64525 6.27962 6.40647 6.94783 7.34929 7.52165 8.07309 8.32096 9.32017 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.015900 B = 0.002314 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.615974 B =12097.899332 C =13013.716003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.119 4.119 3 C -0.101 4.101 4 C -0.096 4.096 5 H 0.128 0.872 6 C -0.147 4.147 7 C 0.541 3.459 8 O -0.583 6.583 9 N -0.640 5.640 10 C 0.093 3.907 11 C 0.110 3.890 12 N -0.277 5.277 13 C -0.016 4.016 14 C -0.036 4.036 15 C 0.234 3.766 16 N -0.740 5.740 17 C -0.241 4.241 18 H 0.086 0.914 19 C -0.080 4.080 20 N -0.974 5.974 21 Si 0.978 3.022 22 H -0.271 1.271 23 H -0.300 1.300 24 H -0.279 1.279 25 N -0.297 5.297 26 N -0.109 5.109 27 C 0.110 3.890 28 H 0.064 0.936 29 H 0.049 0.951 30 H 0.047 0.953 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.053 0.947 34 H 0.049 0.951 35 H 0.093 0.907 36 H 0.044 0.956 37 H 0.076 0.924 38 H 0.095 0.905 39 H 0.082 0.918 40 H 0.168 0.832 41 H 0.231 0.769 42 H 0.068 0.932 43 H 0.028 0.972 44 H 0.370 0.630 45 H 0.249 0.751 46 H 0.117 0.883 47 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.203 -20.794 12.811 31.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.156 4.156 3 C -0.139 4.139 4 C -0.117 4.117 5 H 0.146 0.854 6 C -0.204 4.204 7 C 0.333 3.667 8 O -0.462 6.462 9 N -0.376 5.376 10 C -0.032 4.032 11 C 0.008 3.992 12 N -0.071 5.071 13 C -0.167 4.167 14 C -0.174 4.174 15 C 0.106 3.894 16 N -0.382 5.382 17 C -0.373 4.373 18 H 0.104 0.896 19 C -0.272 4.272 20 N -0.624 5.624 21 Si 0.807 3.193 22 H -0.196 1.196 23 H -0.227 1.227 24 H -0.205 1.205 25 N -0.164 5.164 26 N -0.087 5.087 27 C -0.013 4.013 28 H 0.083 0.917 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.111 0.889 36 H 0.063 0.937 37 H 0.095 0.905 38 H 0.113 0.887 39 H 0.100 0.900 40 H 0.185 0.815 41 H 0.247 0.753 42 H 0.085 0.915 43 H 0.046 0.954 44 H 0.201 0.799 45 H 0.058 0.942 46 H 0.135 0.865 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -19.411 -19.546 14.000 30.900 hybrid contribution 0.023 0.810 -1.642 1.831 sum -19.388 -18.736 12.359 29.659 Atomic orbital electron populations 1.21793 0.96052 1.02074 1.01476 1.21569 0.95818 0.94947 1.03307 1.21433 0.92628 0.97999 1.01870 1.21366 0.97219 0.90345 1.02747 0.85389 1.21912 1.02288 1.02198 0.94025 1.21186 0.79181 0.92649 0.73713 1.90722 1.55093 1.48687 1.51738 1.49700 1.04242 1.10352 1.73317 1.23576 0.86854 0.90912 1.01809 1.24137 0.73902 0.98265 1.02849 1.47409 1.13606 1.31106 1.15025 1.23753 0.94900 1.05833 0.92192 1.22310 0.97305 1.00667 0.97112 1.19008 0.93495 0.92040 0.84828 1.42525 1.45020 1.26526 1.24162 1.19671 1.13069 1.05868 0.98674 0.89604 1.25645 1.01510 0.97270 1.02736 1.69853 1.40333 1.13669 1.38592 0.85139 0.78395 0.76745 0.79026 1.19624 1.22692 1.20525 1.75060 1.17041 1.18975 1.05303 1.78205 0.94928 1.13526 1.22054 1.23943 0.78778 0.95610 1.02931 0.91658 0.93213 0.93376 0.90500 0.90575 0.92810 0.93259 0.88874 0.93717 0.90517 0.88663 0.89969 0.81511 0.75284 0.91479 0.95363 0.79909 0.94197 0.86528 0.83444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.47 9.91 71.98 0.71 -0.75 16 2 C -0.12 -0.96 5.69 30.59 0.17 -0.78 16 3 C -0.10 -1.33 4.03 30.60 0.12 -1.20 16 4 C -0.10 -0.99 2.55 -11.54 -0.03 -1.02 16 5 H 0.13 0.60 8.14 -2.38 -0.02 0.58 16 6 C -0.15 -1.08 8.83 71.98 0.64 -0.44 16 7 C 0.54 10.02 7.38 87.66 0.65 10.67 16 8 O -0.58 -16.91 16.65 -3.05 -0.05 -16.96 16 9 N -0.64 -9.14 3.57 -837.12 -2.99 -12.12 16 10 C 0.09 1.62 8.64 86.48 0.75 2.37 16 11 C 0.11 1.45 5.15 46.75 0.24 1.69 16 12 N -0.28 -6.36 3.54 -332.03 -1.18 -7.53 16 13 C -0.02 -0.38 10.72 83.49 0.89 0.52 16 14 C -0.04 -1.25 6.61 41.60 0.28 -0.98 16 15 C 0.23 9.28 6.82 85.63 0.58 9.86 16 16 N -0.74 -38.01 5.59 -347.18 -1.94 -39.95 16 17 C -0.24 -13.35 9.99 84.03 0.84 -12.51 16 18 H 0.09 4.42 7.83 -2.91 -0.02 4.39 16 19 C -0.08 -4.61 5.50 84.86 0.47 -4.14 16 20 N -0.97 -60.86 13.06 21.65 0.28 -60.57 16 21 Si 0.98 46.06 29.55 68.60 2.03 48.08 16 22 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 23 H -0.30 -14.43 7.11 99.48 0.71 -13.73 16 24 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 25 N -0.30 -11.67 12.41 -48.60 -0.60 -12.28 16 26 N -0.11 -3.56 13.17 37.02 0.49 -3.07 16 27 C 0.11 0.73 6.24 86.48 0.54 1.27 16 28 H 0.06 0.47 8.14 -2.38 -0.02 0.45 16 29 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.08 0.47 6.56 -2.39 -0.02 0.45 16 32 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.05 0.89 7.95 -2.39 -0.02 0.87 16 34 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.09 0.36 6.56 -2.39 -0.02 0.34 16 36 H 0.04 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.08 0.33 6.14 -2.39 -0.01 0.32 16 38 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.17 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.23 3.42 6.72 -2.91 -0.02 3.40 16 42 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 43 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.37 20.97 7.66 -92.71 -0.71 20.26 16 45 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 46 H 0.12 0.57 6.13 -2.39 -0.01 0.55 16 47 H 0.15 -0.14 8.14 -2.39 -0.02 -0.16 16 Total: -1.00 -83.03 386.64 3.16 -79.87 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: 0.27 Total: 19.99 kcal Atomic # 6 Polarization: -2.31 SS G_CDS: 6.85 Total: 4.54 kcal Atomic # 7 Polarization: -129.60 SS G_CDS: -5.94 Total: -135.53 kcal Atomic # 8 Polarization: -16.91 SS G_CDS: -0.05 Total: -16.96 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.08 kcal Total: -83.03 3.16 -79.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105196965.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.681 kcal (2) G-P(sol) polarization free energy of solvation -83.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds