Wall clock time and date at job start Fri Apr 10 2020 18:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47291 * 2 1 4 4 C 1.53001 * 109.46983 * 119.99930 * 2 1 3 5 5 H 1.09004 * 109.47399 * 300.00209 * 4 2 1 6 6 C 1.53002 * 109.47050 * 59.99922 * 4 2 1 7 7 C 1.50699 * 109.47432 * 179.97438 * 4 2 1 8 8 O 1.21285 * 119.99717 * 0.02562 * 7 4 2 9 9 N 1.34777 * 120.00128 * 179.97438 * 7 4 2 10 10 C 1.47587 * 134.49194 * 180.02562 * 9 7 4 11 11 C 1.53947 * 86.11492 * 155.35831 * 10 9 7 12 12 N 1.46494 * 113.73833 * 137.94973 * 11 10 9 13 13 C 1.35317 * 125.87155 * 275.32706 * 12 11 10 14 14 C 1.35352 * 106.17693 * 180.11507 * 13 12 11 15 15 C 1.50700 * 126.75361 * 179.84844 * 14 13 12 16 16 N 1.46498 * 109.46769 * 94.71485 * 15 14 13 17 17 C 1.36943 * 119.99752 * 179.72432 * 16 15 14 18 18 H 1.08002 * 119.99793 * 0.27665 * 17 16 15 19 19 C 1.38811 * 120.00012 * 180.27737 * 17 16 15 20 20 N 1.31624 * 119.99698 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00072 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47159 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.47290 * 120.00044 * 21 19 17 24 24 H 1.48503 * 109.47163 * 240.00049 * 21 19 17 25 25 N 1.33772 * 106.49634 * 359.59642 * 14 13 12 26 26 N 1.28636 * 108.88627 * 0.25926 * 25 14 13 27 27 C 1.47585 * 134.49454 * 0.02562 * 9 7 4 28 28 H 1.08999 * 109.47053 * 300.00200 * 1 2 3 29 29 H 1.09000 * 109.46812 * 59.99796 * 1 2 3 30 30 H 1.08993 * 109.46852 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47540 * 239.99707 * 2 1 3 32 32 H 1.09004 * 109.46785 * 59.99978 * 3 2 1 33 33 H 1.08998 * 109.47021 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.47053 * 299.99446 * 3 2 1 35 35 H 1.08998 * 109.47053 * 180.02562 * 6 4 2 36 36 H 1.08998 * 109.47021 * 300.00229 * 6 4 2 37 37 H 1.08996 * 109.47067 * 60.00471 * 6 4 2 38 38 H 1.09000 * 113.76791 * 41.06228 * 10 9 7 39 39 H 1.08999 * 113.76608 * 269.66150 * 10 9 7 40 40 H 1.08997 * 113.74241 * 269.15464 * 11 10 9 41 41 H 1.08002 * 126.91295 * 359.96910 * 13 12 11 42 42 H 1.09004 * 109.47210 * 334.71843 * 15 14 13 43 43 H 1.08994 * 109.47121 * 214.71813 * 15 14 13 44 44 H 0.97001 * 120.00384 * 0.02562 * 16 15 14 45 45 H 0.96999 * 119.99739 * 180.02562 * 20 19 17 46 46 H 1.08992 * 113.76674 * 90.33680 * 27 9 7 47 47 H 1.09002 * 113.76315 * 318.94269 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6766 -0.2074 2.1393 6 6 1.5299 -2.1638 1.2493 7 6 3.5470 -0.7219 1.2491 8 8 4.1534 -0.1966 0.3395 9 7 4.2208 -1.3051 2.2601 10 6 5.6497 -1.4897 2.5801 11 6 5.1993 -1.5973 4.0483 12 7 5.8795 -2.6564 4.7977 13 6 5.5213 -3.9609 4.8292 14 6 6.4136 -4.5776 5.6388 15 6 6.4425 -6.0403 6.0005 16 7 7.3533 -6.7485 5.0977 17 6 7.5467 -8.0968 5.2396 18 1 7.0244 -8.6386 6.0142 19 6 8.4141 -8.7669 4.3879 20 7 9.0510 -8.1063 3.4442 21 14 8.6774 -10.6061 4.5809 22 1 7.8506 -11.1090 5.7072 23 1 8.2796 -11.2974 3.3282 24 1 10.1111 -10.8742 4.8604 25 7 7.2682 -3.6343 6.0504 26 7 6.9244 -2.5072 5.5345 27 6 3.8262 -2.0157 3.4920 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.8928 -2.6774 2.1395 36 1 0.4399 -2.1637 1.2492 37 1 1.8933 -2.6776 0.3594 38 1 6.2633 -0.6132 2.3720 39 1 6.0734 -2.4116 2.1818 40 1 5.1890 -0.6432 4.5752 41 1 4.6892 -4.4177 4.3140 42 1 5.4400 -6.4577 5.9062 43 1 6.7882 -6.1537 7.0279 44 1 7.8226 -6.2618 4.4022 45 1 9.6568 -8.5747 2.8488 46 1 3.7143 -3.0920 3.3616 47 1 2.9839 -1.5590 4.0118 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105337270.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:48 Heat of formation + Delta-G solvation = 111.502860 kcal Electronic energy + Delta-G solvation = -26834.628259 eV Core-core repulsion = 23056.673117 eV Total energy + Delta-G solvation = -3777.955143 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.15253 -40.98200 -38.91592 -36.37316 -35.02765 -33.59539 -31.93046 -31.57262 -29.97746 -29.11620 -27.64790 -26.95732 -25.89378 -25.00277 -23.68512 -22.84645 -21.34056 -20.85607 -20.40658 -19.36210 -17.93630 -17.64064 -17.07118 -16.60103 -16.13797 -15.47180 -15.04740 -14.87029 -14.62238 -14.52929 -14.17518 -13.96284 -13.81971 -13.46600 -13.33654 -13.15265 -12.75791 -12.66224 -12.62541 -12.50678 -12.44860 -12.08813 -11.99198 -11.72792 -11.40305 -11.30806 -11.11822 -10.97822 -10.91035 -10.83834 -10.53265 -10.08554 -9.99962 -9.91147 -9.75450 -9.27144 -8.93335 -8.88862 -6.93500 -5.75377 -3.05280 1.68113 1.89655 2.12929 2.61756 2.84344 3.43265 3.44718 3.50229 3.52712 3.68657 4.10906 4.21036 4.26817 4.42798 4.59802 4.62894 4.66362 4.71020 4.80087 4.85984 4.95765 5.03909 5.08425 5.16922 5.20458 5.28654 5.30473 5.37479 5.40820 5.43835 5.49079 5.56987 5.59972 5.69909 5.75178 5.81925 5.98782 6.13156 6.14747 6.34281 6.60683 6.65407 6.74236 7.09438 7.70010 7.70397 8.41727 8.76133 9.53667 10.08902 10.44523 11.47360 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.016878 B = 0.002417 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.567574 B =11581.172464 C =12363.846908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.077 4.077 3 C -0.160 4.160 4 C -0.100 4.100 5 H 0.097 0.903 6 C -0.150 4.150 7 C 0.548 3.452 8 O -0.524 6.524 9 N -0.643 5.643 10 C 0.103 3.897 11 C 0.113 3.887 12 N -0.295 5.295 13 C -0.046 4.046 14 C 0.000 4.000 15 C 0.232 3.768 16 N -0.726 5.726 17 C -0.240 4.240 18 H 0.074 0.926 19 C -0.013 4.013 20 N -0.931 5.931 21 Si 0.909 3.091 22 H -0.279 1.279 23 H -0.292 1.292 24 H -0.291 1.291 25 N -0.250 5.250 26 N -0.090 5.090 27 C 0.099 3.901 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.077 0.923 32 H 0.046 0.954 33 H 0.081 0.919 34 H 0.052 0.948 35 H 0.061 0.939 36 H 0.074 0.926 37 H 0.063 0.937 38 H 0.101 0.899 39 H 0.099 0.901 40 H 0.145 0.855 41 H 0.188 0.812 42 H 0.038 0.962 43 H 0.040 0.960 44 H 0.385 0.615 45 H 0.255 0.745 46 H 0.104 0.896 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.699 18.748 -3.592 28.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.096 4.096 3 C -0.217 4.217 4 C -0.121 4.121 5 H 0.115 0.885 6 C -0.208 4.208 7 C 0.338 3.662 8 O -0.399 6.399 9 N -0.380 5.380 10 C -0.020 4.020 11 C 0.009 3.991 12 N -0.089 5.089 13 C -0.196 4.196 14 C -0.138 4.138 15 C 0.103 3.897 16 N -0.371 5.371 17 C -0.371 4.371 18 H 0.092 0.908 19 C -0.210 4.210 20 N -0.580 5.580 21 Si 0.740 3.260 22 H -0.205 1.205 23 H -0.219 1.219 24 H -0.218 1.218 25 N -0.118 5.118 26 N -0.069 5.069 27 C -0.025 4.025 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.095 0.905 32 H 0.065 0.935 33 H 0.100 0.900 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.119 0.881 39 H 0.117 0.883 40 H 0.162 0.838 41 H 0.205 0.795 42 H 0.056 0.944 43 H 0.058 0.942 44 H 0.219 0.781 45 H 0.065 0.935 46 H 0.122 0.878 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -19.466 19.983 -3.663 28.137 hybrid contribution -0.430 -1.562 -0.671 1.754 sum -19.896 18.421 -4.334 27.458 Atomic orbital electron populations 1.21923 0.94726 1.01988 1.02029 1.20933 0.95345 0.96742 0.96562 1.22082 1.03782 0.94812 1.01055 1.21371 0.90435 0.98984 1.01353 0.88458 1.21901 1.02266 0.93712 1.02886 1.20430 0.89769 0.76723 0.79256 1.90683 1.70355 1.44567 1.34308 1.49701 1.08422 1.56655 1.23267 1.23612 0.84353 1.04292 0.89777 1.23695 0.92488 0.91209 0.91740 1.47116 1.20961 1.07596 1.33269 1.23309 1.05736 0.83946 1.06638 1.22495 0.93463 0.98548 0.99253 1.18964 0.94918 0.80958 0.94885 1.42318 1.51647 1.05997 1.37127 1.19268 1.21010 0.83995 1.12795 0.90805 1.24770 0.99650 0.98158 0.98373 1.69692 1.32273 1.34829 1.21175 0.86089 0.77588 0.85155 0.77165 1.20452 1.21921 1.21838 1.75131 1.22147 0.95179 1.19328 1.78309 1.00858 1.20471 1.07216 1.23661 0.96328 0.99553 0.82947 0.92628 0.92325 0.92233 0.90457 0.93452 0.90028 0.92864 0.92008 0.90746 0.91816 0.88097 0.88251 0.83751 0.79480 0.94423 0.94249 0.78112 0.93538 0.87808 0.87816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 8.84 37.16 0.33 -0.45 16 2 C -0.08 -0.55 2.15 -90.62 -0.19 -0.75 16 3 C -0.16 -1.27 8.87 37.16 0.33 -0.95 16 4 C -0.10 -0.66 2.15 -91.77 -0.20 -0.86 16 5 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 6 C -0.15 -0.82 8.72 37.16 0.32 -0.50 16 7 C 0.55 5.28 7.09 -10.99 -0.08 5.20 16 8 O -0.52 -7.00 14.39 5.55 0.08 -6.92 16 9 N -0.64 -5.24 3.57 -178.53 -0.64 -5.88 16 10 C 0.10 0.94 8.64 -2.97 -0.03 0.91 16 11 C 0.11 0.90 5.15 -70.14 -0.36 0.54 16 12 N -0.29 -3.69 3.54 -56.30 -0.20 -3.89 16 13 C -0.05 -0.63 10.72 -17.04 -0.18 -0.81 16 14 C 0.00 0.00 6.61 -82.78 -0.55 -0.55 16 15 C 0.23 4.69 6.82 -5.19 -0.04 4.65 16 16 N -0.73 -18.61 5.59 -61.09 -0.34 -18.95 16 17 C -0.24 -6.67 9.99 -15.06 -0.15 -6.82 16 18 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 19 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 20 N -0.93 -28.54 13.06 55.49 0.72 -27.81 16 21 Si 0.91 22.36 29.55 -169.99 -5.02 17.34 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 24 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 25 N -0.25 -4.89 12.41 33.29 0.41 -4.48 16 26 N -0.09 -1.50 13.17 60.35 0.79 -0.70 16 27 C 0.10 0.56 6.24 -2.97 -0.02 0.54 16 28 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.27 6.43 -51.93 -0.33 -0.06 16 31 H 0.08 0.67 8.10 -51.93 -0.42 0.25 16 32 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.08 0.85 5.51 -51.93 -0.29 0.57 16 34 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 0.29 6.14 -51.93 -0.32 -0.03 16 36 H 0.07 0.31 6.43 -51.93 -0.33 -0.02 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.14 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.19 1.85 6.72 -52.49 -0.35 1.50 16 42 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.39 10.70 7.66 -40.82 -0.31 10.38 16 45 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 46 H 0.10 0.54 6.13 -51.93 -0.32 0.22 16 47 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 381.04 15.07 5.74 5.74 Total: -1.00 -35.71 381.04 -6.65 -42.36 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -7.30 Total: 3.52 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: -0.91 Total: -0.32 kcal Atomic # 7 Polarization: -62.47 SS G_CDS: 0.75 Total: -61.72 kcal Atomic # 8 Polarization: -7.00 SS G_CDS: 0.08 Total: -6.92 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.71 -6.65 -42.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105337270.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.861 kcal (2) G-P(sol) polarization free energy of solvation -35.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds