Wall clock time and date at job start Fri Apr 10 2020 18:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47291 * 2 1 4 4 C 1.53001 * 109.46983 * 119.99930 * 2 1 3 5 5 H 1.09004 * 109.47399 * 300.00209 * 4 2 1 6 6 C 1.53002 * 109.47050 * 59.99922 * 4 2 1 7 7 C 1.50699 * 109.47432 * 179.97438 * 4 2 1 8 8 O 1.21285 * 119.99717 * 0.02562 * 7 4 2 9 9 N 1.34777 * 120.00128 * 179.97438 * 7 4 2 10 10 C 1.47587 * 134.49194 * 180.02562 * 9 7 4 11 11 C 1.53947 * 86.11492 * 155.35831 * 10 9 7 12 12 N 1.46494 * 113.73833 * 137.94973 * 11 10 9 13 13 C 1.35317 * 125.87155 * 275.32706 * 12 11 10 14 14 C 1.35352 * 106.17693 * 180.11507 * 13 12 11 15 15 C 1.50700 * 126.75361 * 179.84844 * 14 13 12 16 16 N 1.46498 * 109.46769 * 94.71485 * 15 14 13 17 17 C 1.36943 * 119.99752 * 179.72432 * 16 15 14 18 18 H 1.08002 * 119.99793 * 0.27665 * 17 16 15 19 19 C 1.38811 * 120.00012 * 180.27737 * 17 16 15 20 20 N 1.31624 * 119.99698 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00072 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47159 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.47290 * 120.00044 * 21 19 17 24 24 H 1.48503 * 109.47163 * 240.00049 * 21 19 17 25 25 N 1.33772 * 106.49634 * 359.59642 * 14 13 12 26 26 N 1.28636 * 108.88627 * 0.25926 * 25 14 13 27 27 C 1.47585 * 134.49454 * 0.02562 * 9 7 4 28 28 H 1.08999 * 109.47053 * 300.00200 * 1 2 3 29 29 H 1.09000 * 109.46812 * 59.99796 * 1 2 3 30 30 H 1.08993 * 109.46852 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47540 * 239.99707 * 2 1 3 32 32 H 1.09004 * 109.46785 * 59.99978 * 3 2 1 33 33 H 1.08998 * 109.47021 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.47053 * 299.99446 * 3 2 1 35 35 H 1.08998 * 109.47053 * 180.02562 * 6 4 2 36 36 H 1.08998 * 109.47021 * 300.00229 * 6 4 2 37 37 H 1.08996 * 109.47067 * 60.00471 * 6 4 2 38 38 H 1.09000 * 113.76791 * 41.06228 * 10 9 7 39 39 H 1.08999 * 113.76608 * 269.66150 * 10 9 7 40 40 H 1.08997 * 113.74241 * 269.15464 * 11 10 9 41 41 H 1.08002 * 126.91295 * 359.96910 * 13 12 11 42 42 H 1.09004 * 109.47210 * 334.71843 * 15 14 13 43 43 H 1.08994 * 109.47121 * 214.71813 * 15 14 13 44 44 H 0.97001 * 120.00384 * 0.02562 * 16 15 14 45 45 H 0.96999 * 119.99739 * 180.02562 * 20 19 17 46 46 H 1.08992 * 113.76674 * 90.33680 * 27 9 7 47 47 H 1.09002 * 113.76315 * 318.94269 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6766 -0.2074 2.1393 6 6 1.5299 -2.1638 1.2493 7 6 3.5470 -0.7219 1.2491 8 8 4.1534 -0.1966 0.3395 9 7 4.2208 -1.3051 2.2601 10 6 5.6497 -1.4897 2.5801 11 6 5.1993 -1.5973 4.0483 12 7 5.8795 -2.6564 4.7977 13 6 5.5213 -3.9609 4.8292 14 6 6.4136 -4.5776 5.6388 15 6 6.4425 -6.0403 6.0005 16 7 7.3533 -6.7485 5.0977 17 6 7.5467 -8.0968 5.2396 18 1 7.0244 -8.6386 6.0142 19 6 8.4141 -8.7669 4.3879 20 7 9.0510 -8.1063 3.4442 21 14 8.6774 -10.6061 4.5809 22 1 7.8506 -11.1090 5.7072 23 1 8.2796 -11.2974 3.3282 24 1 10.1111 -10.8742 4.8604 25 7 7.2682 -3.6343 6.0504 26 7 6.9244 -2.5072 5.5345 27 6 3.8262 -2.0157 3.4920 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.8928 -2.6774 2.1395 36 1 0.4399 -2.1637 1.2492 37 1 1.8933 -2.6776 0.3594 38 1 6.2633 -0.6132 2.3720 39 1 6.0734 -2.4116 2.1818 40 1 5.1890 -0.6432 4.5752 41 1 4.6892 -4.4177 4.3140 42 1 5.4400 -6.4577 5.9062 43 1 6.7882 -6.1537 7.0279 44 1 7.8226 -6.2618 4.4022 45 1 9.6568 -8.5747 2.8488 46 1 3.7143 -3.0920 3.3616 47 1 2.9839 -1.5590 4.0118 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105337270.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:47 Heat of formation + Delta-G solvation = 85.929367 kcal Electronic energy + Delta-G solvation = -26835.737209 eV Core-core repulsion = 23056.673117 eV Total energy + Delta-G solvation = -3779.064092 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -44.31293 -41.69213 -39.62969 -37.00871 -36.78422 -34.81582 -33.59053 -32.22526 -31.62246 -29.85382 -28.14836 -27.84438 -27.31073 -25.71948 -24.76914 -24.45590 -22.39610 -21.95047 -21.10563 -19.99873 -19.38218 -18.61362 -18.24549 -17.44055 -17.13218 -16.59127 -16.29550 -15.91742 -15.62186 -15.46110 -15.12824 -15.08177 -14.85636 -14.58118 -14.30195 -14.13984 -13.94293 -13.61312 -13.36755 -13.16334 -13.04473 -12.96456 -12.88351 -12.80071 -12.61624 -12.49110 -12.39703 -12.02361 -11.98582 -11.85993 -11.79322 -11.61824 -11.47966 -11.05531 -10.95819 -10.68376 -10.21251 -9.95918 -9.00020 -7.92310 -5.22257 0.57046 1.07977 1.42854 1.47070 1.51786 1.53426 1.62676 1.86649 2.60643 2.76153 3.05072 3.39234 3.45082 3.57041 3.67388 3.73470 3.91683 3.96632 4.10360 4.17756 4.23631 4.24892 4.33271 4.38562 4.41630 4.48976 4.53774 4.57925 4.65333 4.68922 4.82478 4.89710 4.91226 4.94568 5.05037 5.09123 5.15323 5.20996 5.22625 5.36606 5.46694 5.53497 5.54855 5.64710 6.27729 6.43823 6.99828 7.34583 7.52258 8.06751 8.31468 9.31844 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.016878 B = 0.002417 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.567574 B =11581.172464 C =12363.846908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.078 4.078 3 C -0.158 4.158 4 C -0.093 4.093 5 H 0.125 0.875 6 C -0.148 4.148 7 C 0.541 3.459 8 O -0.572 6.572 9 N -0.641 5.641 10 C 0.094 3.906 11 C 0.110 3.890 12 N -0.277 5.277 13 C -0.016 4.016 14 C -0.035 4.035 15 C 0.234 3.766 16 N -0.740 5.740 17 C -0.238 4.238 18 H 0.087 0.913 19 C -0.080 4.080 20 N -0.974 5.974 21 Si 0.977 3.023 22 H -0.260 1.260 23 H -0.293 1.293 24 H -0.299 1.299 25 N -0.297 5.297 26 N -0.109 5.109 27 C 0.109 3.891 28 H 0.068 0.932 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.052 0.948 34 H 0.052 0.948 35 H 0.076 0.924 36 H 0.093 0.907 37 H 0.044 0.956 38 H 0.095 0.905 39 H 0.082 0.918 40 H 0.167 0.833 41 H 0.231 0.769 42 H 0.068 0.932 43 H 0.029 0.971 44 H 0.370 0.630 45 H 0.249 0.751 46 H 0.116 0.884 47 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.234 18.638 -2.525 30.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.097 4.097 3 C -0.215 4.215 4 C -0.114 4.114 5 H 0.143 0.857 6 C -0.206 4.206 7 C 0.333 3.667 8 O -0.450 6.450 9 N -0.377 5.377 10 C -0.030 4.030 11 C 0.008 3.992 12 N -0.071 5.071 13 C -0.167 4.167 14 C -0.174 4.174 15 C 0.106 3.894 16 N -0.383 5.383 17 C -0.370 4.370 18 H 0.104 0.896 19 C -0.272 4.272 20 N -0.625 5.625 21 Si 0.806 3.194 22 H -0.183 1.183 23 H -0.220 1.220 24 H -0.227 1.227 25 N -0.164 5.164 26 N -0.087 5.087 27 C -0.013 4.013 28 H 0.087 0.913 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.094 0.906 36 H 0.111 0.889 37 H 0.063 0.937 38 H 0.114 0.886 39 H 0.100 0.900 40 H 0.184 0.816 41 H 0.247 0.753 42 H 0.085 0.915 43 H 0.047 0.953 44 H 0.201 0.799 45 H 0.058 0.942 46 H 0.134 0.866 47 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -23.048 19.895 -2.532 30.552 hybrid contribution 0.624 -1.393 -1.027 1.839 sum -22.424 18.502 -3.559 29.288 Atomic orbital electron populations 1.21882 0.92777 1.02811 1.02629 1.20926 0.96839 0.95850 0.96123 1.22031 1.01892 0.95833 1.01764 1.21418 0.87836 1.00122 1.01987 0.85734 1.21926 1.03422 0.92509 1.02699 1.21111 0.91065 0.75860 0.78650 1.90674 1.71481 1.46630 1.36246 1.49719 1.07870 1.56343 1.23748 1.23558 0.85357 1.03327 0.90789 1.24141 0.93475 0.91093 0.90467 1.47411 1.19608 1.08355 1.31753 1.23751 1.05047 0.83789 1.04121 1.22304 0.95441 0.97633 1.01984 1.19007 0.94802 0.82440 0.93107 1.42548 1.52467 1.05657 1.37599 1.19743 1.19927 0.85214 1.12087 0.89557 1.25638 1.00208 1.02697 0.98659 1.69864 1.33594 1.36508 1.22552 0.85013 0.77020 0.79876 0.77481 1.18349 1.22001 1.22654 1.75060 1.23813 0.96309 1.21246 1.78204 1.02414 1.19676 1.08386 1.23927 0.95867 1.00443 0.81094 0.91273 0.92528 0.91270 0.92884 0.92037 0.92889 0.92852 0.90560 0.88852 0.93659 0.88644 0.90021 0.81569 0.75309 0.91474 0.95343 0.79916 0.94197 0.86589 0.83614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 8.84 71.98 0.64 -0.49 16 2 C -0.08 -1.02 2.15 -10.79 -0.02 -1.05 16 3 C -0.16 -2.43 8.87 71.98 0.64 -1.79 16 4 C -0.09 -0.97 2.15 -11.54 -0.02 -1.00 16 5 H 0.12 0.67 8.14 -2.38 -0.02 0.65 16 6 C -0.15 -1.12 8.72 71.98 0.63 -0.49 16 7 C 0.54 9.75 7.09 87.66 0.62 10.37 16 8 O -0.57 -15.70 14.39 -3.05 -0.04 -15.75 16 9 N -0.64 -9.02 3.57 -837.12 -2.99 -12.01 16 10 C 0.09 1.62 8.64 86.48 0.75 2.37 16 11 C 0.11 1.45 5.15 46.75 0.24 1.69 16 12 N -0.28 -6.36 3.54 -332.03 -1.18 -7.53 16 13 C -0.02 -0.39 10.72 83.49 0.89 0.51 16 14 C -0.04 -1.24 6.61 41.60 0.28 -0.96 16 15 C 0.23 9.27 6.82 85.63 0.58 9.86 16 16 N -0.74 -38.01 5.59 -347.18 -1.94 -39.95 16 17 C -0.24 -13.16 9.99 84.03 0.84 -12.32 16 18 H 0.09 4.45 7.83 -2.91 -0.02 4.43 16 19 C -0.08 -4.64 5.50 84.86 0.47 -4.17 16 20 N -0.97 -60.92 13.06 21.65 0.28 -60.64 16 21 Si 0.98 46.09 29.55 68.60 2.03 48.11 16 22 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 23 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 24 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 25 N -0.30 -11.69 12.41 -48.60 -0.60 -12.30 16 26 N -0.11 -3.55 13.17 37.02 0.49 -3.06 16 27 C 0.11 0.74 6.24 86.48 0.54 1.28 16 28 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 29 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.07 0.42 6.43 -2.39 -0.02 0.40 16 31 H 0.05 0.94 8.10 -2.39 -0.02 0.92 16 32 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 33 H 0.05 1.15 5.51 -2.39 -0.01 1.13 16 34 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.08 0.35 6.14 -2.39 -0.01 0.34 16 36 H 0.09 0.38 6.43 -2.39 -0.02 0.37 16 37 H 0.04 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.17 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.23 3.43 6.72 -2.91 -0.02 3.41 16 42 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 43 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.37 20.97 7.66 -92.71 -0.71 20.26 16 45 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 46 H 0.12 0.58 6.13 -2.39 -0.01 0.57 16 47 H 0.15 -0.09 8.14 -2.39 -0.02 -0.11 16 Total: -1.00 -82.01 381.04 3.38 -78.62 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: 0.27 Total: 20.69 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: 7.06 Total: 3.81 kcal Atomic # 7 Polarization: -129.55 SS G_CDS: -5.94 Total: -135.48 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: -0.04 Total: -15.75 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.11 kcal Total: -82.01 3.38 -78.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105337270.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.553 kcal (2) G-P(sol) polarization free energy of solvation -82.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds