Wall clock time and date at job start Fri Apr 10 2020 18:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46503 * 109.46665 * 2 1 4 4 N 1.28519 * 124.44141 * 89.97953 * 3 2 1 5 5 C 1.31134 * 109.05427 * 180.02562 * 4 3 2 6 6 C 1.50702 * 127.11196 * 180.02562 * 5 4 3 7 7 C 1.40922 * 105.77956 * 359.97438 * 5 4 3 8 8 C 1.47799 * 127.24008 * 179.97438 * 7 5 4 9 9 O 1.21558 * 120.00016 * 359.97438 * 8 7 5 10 10 N 1.34773 * 120.00195 * 180.02562 * 8 7 5 11 11 C 1.47020 * 125.64807 * 179.97438 * 10 8 7 12 12 C 1.54325 * 107.27137 * 178.90348 * 11 10 8 13 13 H 1.09004 * 110.72145 * 96.34593 * 12 11 10 14 14 C 1.53004 * 110.71948 * 219.44289 * 12 11 10 15 15 N 1.46499 * 109.47198 * 291.15745 * 14 12 11 16 16 C 1.36939 * 119.99933 * 180.27608 * 15 14 12 17 17 H 1.08001 * 119.99700 * 359.72658 * 16 15 14 18 18 C 1.38810 * 120.00095 * 179.71972 * 16 15 14 19 19 N 1.31624 * 119.99740 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00044 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47173 * 60.00435 * 20 18 16 22 22 H 1.48497 * 109.47172 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.47132 * 300.00314 * 20 18 16 24 24 C 1.55155 * 103.10293 * 337.89534 * 12 11 10 25 25 H 1.08997 * 111.00346 * 277.34006 * 24 12 11 26 26 C 1.52999 * 111.00477 * 153.48576 * 24 12 11 27 27 C 1.47420 * 125.64904 * 359.95583 * 10 8 7 28 28 N 1.28591 * 124.43930 * 270.28057 * 3 2 1 29 29 H 1.09005 * 109.47146 * 60.00212 * 1 2 3 30 30 H 1.09004 * 109.46771 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47035 * 299.99836 * 1 2 3 32 32 H 1.08996 * 109.47035 * 240.00164 * 2 1 3 33 33 H 1.08996 * 109.46572 * 119.99742 * 2 1 3 34 34 H 1.09002 * 109.47435 * 269.97510 * 6 5 4 35 35 H 1.09003 * 109.46467 * 29.97277 * 6 5 4 36 36 H 1.09000 * 109.47204 * 149.96936 * 6 5 4 37 37 H 1.08997 * 109.88257 * 59.48494 * 11 10 8 38 38 H 1.09003 * 109.88420 * 298.32042 * 11 10 8 39 39 H 1.09009 * 109.46730 * 171.15533 * 14 12 11 40 40 H 1.08998 * 109.46846 * 51.16077 * 14 12 11 41 41 H 0.97001 * 119.99790 * 359.97438 * 15 14 12 42 42 H 0.96998 * 119.99409 * 179.97438 * 19 18 16 43 43 H 1.08998 * 109.46911 * 60.00277 * 26 24 12 44 44 H 1.09004 * 109.46795 * 180.02562 * 26 24 12 45 45 H 1.08998 * 109.47407 * 300.00086 * 26 24 12 46 46 H 1.09002 * 110.36938 * 323.00298 * 27 10 8 47 47 H 1.09002 * 110.37126 * 85.21683 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2602 2.0667 1.0599 5 6 2.6811 3.2589 0.7120 6 6 3.0795 4.3862 1.6294 7 6 2.6850 3.2678 -0.6972 8 6 3.0786 4.3831 -1.5836 9 8 3.4494 5.4375 -1.1056 10 7 3.0254 4.2315 -2.9217 11 6 3.3856 5.2540 -3.9148 12 6 3.1940 4.6244 -5.3107 13 1 2.2195 4.8877 -5.7221 14 6 4.3143 5.0578 -6.2584 15 7 4.1754 6.4849 -6.5585 16 6 5.0680 7.0984 -7.3965 17 1 5.8769 6.5311 -7.8326 18 6 4.9330 8.4494 -7.6854 19 7 3.9473 9.1408 -7.1536 20 14 6.1509 9.2864 -8.8279 21 1 6.1130 8.6294 -10.1591 22 1 5.7898 10.7196 -8.9723 23 1 7.5187 9.1759 -8.2601 24 6 3.2757 3.1018 -5.0241 25 1 4.3123 2.7687 -4.9742 26 6 2.4955 2.3041 -6.0709 27 6 2.5967 3.0129 -3.6320 28 7 2.2557 2.0687 -1.0605 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.2067 5.0005 1.8506 35 1 3.4794 3.9757 2.5566 36 1 3.8407 4.9975 1.1446 37 1 4.4261 5.5500 -3.7814 38 1 2.7345 6.1214 -3.8068 39 1 4.2502 4.4840 -7.1831 40 1 5.2799 4.8781 -5.7856 41 1 3.4486 6.9943 -6.1671 42 1 3.8532 10.0849 -7.3552 43 1 2.9125 2.4964 -7.0594 44 1 2.5690 1.2400 -5.8459 45 1 1.4487 2.6073 -6.0529 46 1 2.9359 2.1243 -3.0996 47 1 1.5122 2.9985 -3.7402 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107090773.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:03 Heat of formation + Delta-G solvation = 82.260559 kcal Electronic energy + Delta-G solvation = -27417.013084 eV Core-core repulsion = 23637.789901 eV Total energy + Delta-G solvation = -3779.223184 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.84958 -39.91398 -37.83244 -35.38827 -34.67461 -33.39735 -32.61410 -31.66305 -31.30956 -29.18369 -28.18401 -26.50584 -25.93093 -24.63552 -23.21788 -22.53865 -21.35537 -20.93963 -20.01777 -19.52997 -17.58958 -17.19862 -17.04150 -16.65751 -16.00214 -15.33345 -14.95204 -14.69049 -14.29965 -14.18299 -13.96014 -13.62851 -13.56170 -13.22533 -13.06419 -12.91680 -12.77207 -12.73006 -12.60342 -12.36203 -12.04483 -11.96172 -11.90859 -11.61622 -11.37144 -11.19830 -10.97114 -10.81043 -10.55745 -10.47357 -10.37850 -10.29714 -10.01655 -9.95708 -9.61997 -9.40149 -8.84030 -8.48696 -6.89233 -5.72427 -3.01542 1.17928 1.75659 1.86329 2.97265 3.25412 3.47300 3.51510 3.52723 3.66923 4.29469 4.31390 4.50538 4.57757 4.58705 4.63698 4.65736 4.91801 4.95399 5.04791 5.14066 5.30609 5.42405 5.50165 5.51194 5.53671 5.56153 5.57548 5.61856 5.67501 5.78531 5.79902 5.89722 6.05214 6.09152 6.13765 6.18517 6.26604 6.34124 6.40357 6.44929 6.48456 6.73624 6.87622 7.55001 7.72828 7.92831 8.19092 8.46064 9.57198 10.14216 10.48793 11.50293 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.020130 B = 0.002758 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.631973 B =10149.542420 C =11229.051974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.134 3.866 3 N -0.145 5.145 4 N -0.294 5.294 5 C 0.061 3.939 6 C -0.069 4.069 7 C -0.039 4.039 8 C 0.616 3.384 9 O -0.524 6.524 10 N -0.602 5.602 11 C 0.118 3.882 12 C -0.100 4.100 13 H 0.086 0.914 14 C 0.165 3.835 15 N -0.733 5.733 16 C -0.241 4.241 17 H 0.069 0.931 18 C -0.013 4.013 19 N -0.932 5.932 20 Si 0.907 3.093 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 C -0.100 4.100 25 H 0.085 0.915 26 C -0.137 4.137 27 C 0.107 3.893 28 N -0.246 5.246 29 H 0.069 0.931 30 H 0.087 0.913 31 H 0.067 0.933 32 H 0.111 0.889 33 H 0.110 0.890 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.097 0.903 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.024 0.976 40 H 0.021 0.979 41 H 0.384 0.616 42 H 0.256 0.744 43 H 0.065 0.935 44 H 0.054 0.946 45 H 0.056 0.944 46 H 0.087 0.913 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.526 -22.176 15.193 27.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.015 3.985 3 N -0.048 5.048 4 N -0.135 5.135 5 C -0.103 4.103 6 C -0.128 4.128 7 C -0.201 4.201 8 C 0.402 3.598 9 O -0.398 6.398 10 N -0.335 5.335 11 C -0.004 4.004 12 C -0.120 4.120 13 H 0.105 0.895 14 C 0.037 3.963 15 N -0.377 5.377 16 C -0.372 4.372 17 H 0.087 0.913 18 C -0.209 4.209 19 N -0.581 5.581 20 Si 0.738 3.262 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.213 1.213 24 C -0.120 4.120 25 H 0.103 0.897 26 C -0.195 4.195 27 C -0.016 4.016 28 N -0.094 5.094 29 H 0.088 0.912 30 H 0.106 0.894 31 H 0.086 0.914 32 H 0.129 0.871 33 H 0.128 0.872 34 H 0.099 0.901 35 H 0.093 0.907 36 H 0.115 0.885 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.042 0.958 40 H 0.039 0.961 41 H 0.218 0.782 42 H 0.066 0.934 43 H 0.084 0.916 44 H 0.073 0.927 45 H 0.075 0.925 46 H 0.105 0.895 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.640 -22.831 15.415 28.587 hybrid contribution 0.575 1.348 -0.576 1.575 sum -7.065 -21.483 14.838 27.048 Atomic orbital electron populations 1.22195 0.92905 1.04015 1.03866 1.22071 0.96208 0.74161 1.06029 1.48160 1.43967 1.13297 0.99329 1.73925 1.18900 1.05313 1.15391 1.23270 1.00529 0.93827 0.92636 1.20244 1.02988 0.92782 0.96754 1.22918 1.09276 0.93675 0.94256 1.16217 0.78418 0.85081 0.80131 1.90814 1.47894 1.26746 1.74390 1.48313 1.64531 1.16289 1.04343 1.22120 1.01991 0.90323 0.85926 1.22539 1.01575 0.93487 0.94360 0.89536 1.20637 0.93905 0.87191 0.94550 1.42357 1.34619 1.03892 1.56824 1.19161 1.05972 0.92226 1.19830 0.91262 1.24741 0.98645 0.96621 1.00898 1.69651 1.32484 1.08039 1.47911 0.86269 0.80703 0.78577 0.80631 1.21317 1.21706 1.21272 1.22423 1.00319 0.95587 0.93655 0.89657 1.21667 1.00011 0.99033 0.98774 1.22587 0.99056 0.87734 0.92228 1.74448 1.15117 1.04488 1.15377 0.91227 0.89431 0.91364 0.87111 0.87183 0.90060 0.90736 0.88462 0.90293 0.90821 0.95802 0.96127 0.78213 0.93446 0.91604 0.92723 0.92459 0.89505 0.91465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.78 10.24 37.16 0.38 -0.40 16 2 C 0.13 0.74 7.24 -4.04 -0.03 0.71 16 3 N -0.15 -1.52 3.94 -10.61 -0.04 -1.57 16 4 N -0.29 -3.54 12.01 33.92 0.41 -3.13 16 5 C 0.06 0.80 7.39 -81.88 -0.61 0.20 16 6 C -0.07 -0.75 10.00 36.01 0.36 -0.39 16 7 C -0.04 -0.55 7.02 -82.68 -0.58 -1.13 16 8 C 0.62 10.17 7.86 -12.35 -0.10 10.08 16 9 O -0.52 -9.96 15.53 5.31 0.08 -9.88 16 10 N -0.60 -9.34 3.33 -171.50 -0.57 -9.91 16 11 C 0.12 2.03 6.27 -3.06 -0.02 2.01 16 12 C -0.10 -1.60 2.45 -88.78 -0.22 -1.81 16 13 H 0.09 1.40 8.04 -51.93 -0.42 0.98 16 14 C 0.17 3.25 5.59 -4.04 -0.02 3.23 16 15 N -0.73 -18.51 5.48 -59.90 -0.33 -18.83 16 16 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 17 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 18 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 19 N -0.93 -28.54 13.06 55.49 0.72 -27.81 16 20 Si 0.91 22.67 29.55 -169.99 -5.02 17.64 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 22 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 C -0.10 -1.25 3.10 -88.34 -0.27 -1.52 16 25 H 0.09 1.07 8.05 -51.93 -0.42 0.65 16 26 C -0.14 -1.42 9.32 37.16 0.35 -1.08 16 27 C 0.11 1.33 5.65 -2.40 -0.01 1.32 16 28 N -0.25 -3.04 9.31 33.42 0.31 -2.72 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.11 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.10 1.18 6.77 -51.93 -0.35 0.83 16 37 H 0.08 1.52 7.73 -51.93 -0.40 1.12 16 38 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 39 H 0.02 0.47 8.14 -51.92 -0.42 0.05 16 40 H 0.02 0.42 8.00 -51.93 -0.42 0.01 16 41 H 0.38 10.23 7.60 -40.82 -0.31 9.92 16 42 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 43 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.06 0.57 8.08 -51.93 -0.42 0.16 16 46 H 0.09 1.02 6.24 -51.93 -0.32 0.70 16 47 H 0.07 0.80 7.99 -51.93 -0.41 0.38 16 LS Contribution 385.31 15.07 5.81 5.81 Total: -1.00 -34.35 385.31 -7.32 -41.67 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -7.67 Total: 4.94 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: -1.02 Total: 3.80 kcal Atomic # 7 Polarization: -64.48 SS G_CDS: 0.50 Total: -63.98 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.08 Total: -9.88 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.35 -7.32 -41.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107090773.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.928 kcal (2) G-P(sol) polarization free energy of solvation -34.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds