Wall clock time and date at job start Fri Apr 10 2020 18:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46503 * 109.46665 * 2 1 4 4 N 1.28519 * 124.44141 * 89.97953 * 3 2 1 5 5 C 1.31134 * 109.05427 * 180.02562 * 4 3 2 6 6 C 1.50702 * 127.11196 * 180.02562 * 5 4 3 7 7 C 1.40922 * 105.77956 * 359.97438 * 5 4 3 8 8 C 1.47799 * 127.24008 * 179.97438 * 7 5 4 9 9 O 1.21558 * 120.00016 * 359.97438 * 8 7 5 10 10 N 1.34773 * 120.00195 * 180.02562 * 8 7 5 11 11 C 1.47020 * 125.64807 * 179.97438 * 10 8 7 12 12 C 1.54325 * 107.27137 * 178.90348 * 11 10 8 13 13 H 1.09004 * 110.72145 * 96.34593 * 12 11 10 14 14 C 1.53004 * 110.71948 * 219.44289 * 12 11 10 15 15 N 1.46499 * 109.47198 * 291.15745 * 14 12 11 16 16 C 1.36939 * 119.99933 * 180.27608 * 15 14 12 17 17 H 1.08001 * 119.99700 * 359.72658 * 16 15 14 18 18 C 1.38810 * 120.00095 * 179.71972 * 16 15 14 19 19 N 1.31624 * 119.99740 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00044 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47173 * 60.00435 * 20 18 16 22 22 H 1.48497 * 109.47172 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.47132 * 300.00314 * 20 18 16 24 24 C 1.55155 * 103.10293 * 337.89534 * 12 11 10 25 25 H 1.08997 * 111.00346 * 277.34006 * 24 12 11 26 26 C 1.52999 * 111.00477 * 153.48576 * 24 12 11 27 27 C 1.47420 * 125.64904 * 359.95583 * 10 8 7 28 28 N 1.28591 * 124.43930 * 270.28057 * 3 2 1 29 29 H 1.09005 * 109.47146 * 60.00212 * 1 2 3 30 30 H 1.09004 * 109.46771 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47035 * 299.99836 * 1 2 3 32 32 H 1.08996 * 109.47035 * 240.00164 * 2 1 3 33 33 H 1.08996 * 109.46572 * 119.99742 * 2 1 3 34 34 H 1.09002 * 109.47435 * 269.97510 * 6 5 4 35 35 H 1.09003 * 109.46467 * 29.97277 * 6 5 4 36 36 H 1.09000 * 109.47204 * 149.96936 * 6 5 4 37 37 H 1.08997 * 109.88257 * 59.48494 * 11 10 8 38 38 H 1.09003 * 109.88420 * 298.32042 * 11 10 8 39 39 H 1.09009 * 109.46730 * 171.15533 * 14 12 11 40 40 H 1.08998 * 109.46846 * 51.16077 * 14 12 11 41 41 H 0.97001 * 119.99790 * 359.97438 * 15 14 12 42 42 H 0.96998 * 119.99409 * 179.97438 * 19 18 16 43 43 H 1.08998 * 109.46911 * 60.00277 * 26 24 12 44 44 H 1.09004 * 109.46795 * 180.02562 * 26 24 12 45 45 H 1.08998 * 109.47407 * 300.00086 * 26 24 12 46 46 H 1.09002 * 110.36938 * 323.00298 * 27 10 8 47 47 H 1.09002 * 110.37126 * 85.21683 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2602 2.0667 1.0599 5 6 2.6811 3.2589 0.7120 6 6 3.0795 4.3862 1.6294 7 6 2.6850 3.2678 -0.6972 8 6 3.0786 4.3831 -1.5836 9 8 3.4494 5.4375 -1.1056 10 7 3.0254 4.2315 -2.9217 11 6 3.3856 5.2540 -3.9148 12 6 3.1940 4.6244 -5.3107 13 1 2.2195 4.8877 -5.7221 14 6 4.3143 5.0578 -6.2584 15 7 4.1754 6.4849 -6.5585 16 6 5.0680 7.0984 -7.3965 17 1 5.8769 6.5311 -7.8326 18 6 4.9330 8.4494 -7.6854 19 7 3.9473 9.1408 -7.1536 20 14 6.1509 9.2864 -8.8279 21 1 6.1130 8.6294 -10.1591 22 1 5.7898 10.7196 -8.9723 23 1 7.5187 9.1759 -8.2601 24 6 3.2757 3.1018 -5.0241 25 1 4.3123 2.7687 -4.9742 26 6 2.4955 2.3041 -6.0709 27 6 2.5967 3.0129 -3.6320 28 7 2.2557 2.0687 -1.0605 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.2067 5.0005 1.8506 35 1 3.4794 3.9757 2.5566 36 1 3.8407 4.9975 1.1446 37 1 4.4261 5.5500 -3.7814 38 1 2.7345 6.1214 -3.8068 39 1 4.2502 4.4840 -7.1831 40 1 5.2799 4.8781 -5.7856 41 1 3.4486 6.9943 -6.1671 42 1 3.8532 10.0849 -7.3552 43 1 2.9125 2.4964 -7.0594 44 1 2.5690 1.2400 -5.8459 45 1 1.4487 2.6073 -6.0529 46 1 2.9359 2.1243 -3.0996 47 1 1.5122 2.9985 -3.7402 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107090773.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:02 Heat of formation + Delta-G solvation = 58.806413 kcal Electronic energy + Delta-G solvation = -27418.030133 eV Core-core repulsion = 23637.789901 eV Total energy + Delta-G solvation = -3780.240232 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.77398 -41.17801 -39.13895 -36.48048 -36.08011 -34.60421 -33.77923 -33.05075 -32.38688 -30.73164 -29.09144 -27.64570 -27.21409 -25.89354 -24.74720 -23.51408 -22.45402 -22.04584 -21.21636 -20.77270 -19.16951 -18.42126 -18.12211 -17.76424 -17.23067 -16.66293 -16.50884 -15.72635 -15.42745 -15.37752 -15.21702 -14.98104 -14.89795 -14.38458 -14.13403 -14.06661 -13.95449 -13.56876 -13.41477 -13.35069 -13.26429 -13.02303 -12.92331 -12.73059 -12.60887 -12.49995 -12.36239 -12.22493 -12.09742 -11.94019 -11.76967 -11.57937 -11.41513 -11.29024 -11.26187 -10.92019 -10.33475 -9.76090 -8.99096 -7.93538 -5.22703 0.14071 0.77625 1.13900 1.47534 1.51117 1.57066 1.79583 2.04215 2.56962 2.72983 3.34971 3.40918 3.49429 3.62309 3.72015 3.80659 3.92260 3.96211 4.16394 4.23023 4.25084 4.39953 4.41714 4.49873 4.53616 4.58250 4.66034 4.71150 4.72893 4.78812 4.80469 4.85668 4.89358 4.93722 5.03379 5.15752 5.16991 5.18664 5.23894 5.25845 5.35845 5.49482 5.53190 5.58644 6.28133 6.32655 6.84031 7.05988 7.34517 8.10020 8.32740 9.29902 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.020130 B = 0.002758 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.631973 B =10149.542420 C =11229.051974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.118 3.882 3 N -0.129 5.129 4 N -0.296 5.296 5 C 0.050 3.950 6 C -0.067 4.067 7 C -0.067 4.067 8 C 0.612 3.388 9 O -0.561 6.561 10 N -0.603 5.603 11 C 0.124 3.876 12 C -0.090 4.090 13 H 0.086 0.914 14 C 0.166 3.834 15 N -0.746 5.746 16 C -0.245 4.245 17 H 0.077 0.923 18 C -0.077 4.077 19 N -0.970 5.970 20 Si 0.974 3.026 21 H -0.274 1.274 22 H -0.296 1.296 23 H -0.280 1.280 24 C -0.087 4.087 25 H 0.088 0.912 26 C -0.133 4.133 27 C 0.111 3.889 28 N -0.238 5.238 29 H 0.056 0.944 30 H 0.118 0.882 31 H 0.054 0.946 32 H 0.134 0.866 33 H 0.132 0.868 34 H 0.087 0.913 35 H 0.095 0.905 36 H 0.079 0.921 37 H 0.052 0.948 38 H 0.051 0.949 39 H 0.036 0.964 40 H 0.017 0.983 41 H 0.373 0.627 42 H 0.251 0.749 43 H 0.059 0.941 44 H 0.081 0.919 45 H 0.061 0.939 46 H 0.101 0.899 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.832 -25.559 15.123 30.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.002 3.998 3 N -0.034 5.034 4 N -0.138 5.138 5 C -0.113 4.113 6 C -0.125 4.125 7 C -0.227 4.227 8 C 0.398 3.602 9 O -0.439 6.439 10 N -0.335 5.335 11 C 0.002 3.998 12 C -0.109 4.109 13 H 0.105 0.895 14 C 0.040 3.960 15 N -0.389 5.389 16 C -0.377 4.377 17 H 0.095 0.905 18 C -0.269 4.269 19 N -0.621 5.621 20 Si 0.803 3.197 21 H -0.200 1.200 22 H -0.223 1.223 23 H -0.206 1.206 24 C -0.107 4.107 25 H 0.107 0.893 26 C -0.190 4.190 27 C -0.010 4.010 28 N -0.088 5.088 29 H 0.075 0.925 30 H 0.137 0.863 31 H 0.073 0.927 32 H 0.152 0.848 33 H 0.150 0.850 34 H 0.106 0.894 35 H 0.114 0.886 36 H 0.097 0.903 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.054 0.946 40 H 0.035 0.965 41 H 0.205 0.795 42 H 0.060 0.940 43 H 0.078 0.922 44 H 0.100 0.900 45 H 0.081 0.919 46 H 0.119 0.881 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.936 -26.282 15.334 31.447 hybrid contribution 0.631 2.222 -0.486 2.360 sum -7.305 -24.060 14.848 29.202 Atomic orbital electron populations 1.22180 0.92005 1.05639 1.02547 1.22701 0.96909 0.71853 1.08362 1.48826 1.41741 1.14269 0.98531 1.73939 1.19049 1.04954 1.15813 1.23545 1.00615 0.94650 0.92477 1.20250 1.02806 0.92341 0.97132 1.22560 1.11773 0.93986 0.94400 1.16577 0.77763 0.85341 0.80472 1.90781 1.49578 1.28408 1.75133 1.48374 1.64264 1.16803 1.04068 1.21860 0.99789 0.90597 0.87589 1.22385 0.99989 0.96218 0.92304 0.89547 1.20767 0.95115 0.84429 0.95722 1.42587 1.33840 1.06071 1.56388 1.19602 1.06133 0.92637 1.19332 0.90499 1.25591 1.00726 0.97501 1.03083 1.69821 1.34543 1.07916 1.49817 0.85204 0.78499 0.76995 0.79020 1.20038 1.22278 1.20581 1.22416 1.01145 0.92808 0.94328 0.89345 1.21657 0.99724 1.00218 0.97410 1.22739 0.99733 0.86784 0.91773 1.74367 1.14688 1.03819 1.15956 0.92495 0.86325 0.92662 0.84756 0.84980 0.89416 0.88596 0.90258 0.92994 0.93087 0.94603 0.96462 0.79495 0.94046 0.92155 0.90012 0.91948 0.88105 0.90265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.02 10.24 71.98 0.74 -0.28 16 2 C 0.12 0.89 7.24 86.38 0.63 1.52 16 3 N -0.13 -2.41 3.94 -187.49 -0.74 -3.15 16 4 N -0.30 -6.63 12.01 -46.59 -0.56 -7.19 16 5 C 0.05 1.28 7.39 43.32 0.32 1.60 16 6 C -0.07 -1.46 10.00 71.24 0.71 -0.75 16 7 C -0.07 -1.90 7.02 42.24 0.30 -1.60 16 8 C 0.61 20.83 7.86 86.77 0.68 21.51 16 9 O -0.56 -22.64 15.53 -3.90 -0.06 -22.70 16 10 N -0.60 -18.99 3.33 -814.78 -2.71 -21.70 16 11 C 0.12 4.49 6.27 86.73 0.54 5.03 16 12 C -0.09 -2.85 2.45 -9.60 -0.02 -2.87 16 13 H 0.09 2.78 8.04 -2.38 -0.02 2.76 16 14 C 0.17 6.55 5.59 86.38 0.48 7.03 16 15 N -0.75 -38.47 5.48 -343.44 -1.88 -40.35 16 16 C -0.25 -13.92 9.99 84.03 0.84 -13.08 16 17 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 18 C -0.08 -4.51 5.50 84.86 0.47 -4.04 16 19 N -0.97 -60.90 13.06 21.65 0.28 -60.62 16 20 Si 0.97 47.01 29.55 68.60 2.03 49.04 16 21 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 22 H -0.30 -14.44 7.11 99.48 0.71 -13.74 16 23 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 24 C -0.09 -2.01 3.10 -9.32 -0.03 -2.04 16 25 H 0.09 2.03 8.05 -2.39 -0.02 2.01 16 26 C -0.13 -2.34 9.32 71.98 0.67 -1.67 16 27 C 0.11 2.59 5.65 86.94 0.49 3.08 16 28 N -0.24 -5.45 9.31 -48.17 -0.45 -5.90 16 29 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 30 H 0.12 0.02 8.14 -2.38 -0.02 0.00 16 31 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.13 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.13 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.08 2.03 6.77 -2.39 -0.02 2.02 16 37 H 0.05 2.13 7.73 -2.39 -0.02 2.11 16 38 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 40 H 0.02 0.71 8.00 -2.39 -0.02 0.69 16 41 H 0.37 20.63 7.60 -92.71 -0.70 19.92 16 42 H 0.25 15.30 8.31 -92.71 -0.77 14.53 16 43 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.06 1.06 8.08 -2.39 -0.02 1.04 16 46 H 0.10 2.11 6.24 -2.39 -0.01 2.10 16 47 H 0.08 1.70 7.99 -2.39 -0.02 1.68 16 Total: -1.00 -76.38 385.31 2.99 -73.39 By element: Atomic # 1 Polarization: 25.48 SS G_CDS: 0.26 Total: 25.74 kcal Atomic # 6 Polarization: 6.63 SS G_CDS: 6.82 Total: 13.45 kcal Atomic # 7 Polarization: -132.86 SS G_CDS: -6.06 Total: -138.91 kcal Atomic # 8 Polarization: -22.64 SS G_CDS: -0.06 Total: -22.70 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 2.03 Total: 49.04 kcal Total: -76.38 2.99 -73.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107090773.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.198 kcal (2) G-P(sol) polarization free energy of solvation -76.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds