Wall clock time and date at job start Fri Apr 10 2020 18:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46833 * 2 1 4 4 H 1.08997 * 109.47830 * 305.00085 * 3 2 1 5 5 C 1.53005 * 109.47279 * 65.00225 * 3 2 1 6 6 C 1.53007 * 109.47081 * 184.99900 * 3 2 1 7 7 C 1.50706 * 109.46908 * 175.00197 * 6 3 2 8 8 O 1.21271 * 120.00215 * 0.02562 * 7 6 3 9 9 N 1.34773 * 119.99465 * 180.02562 * 7 6 3 10 10 C 1.46501 * 120.00017 * 179.97438 * 9 7 6 11 11 C 1.50695 * 109.47705 * 179.97438 * 10 9 7 12 12 C 1.35348 * 126.75026 * 94.99599 * 11 10 9 13 13 N 1.35317 * 106.17735 * 179.78015 * 12 11 10 14 14 C 1.46497 * 125.87017 * 180.21003 * 13 12 11 15 15 C 1.53942 * 113.74196 * 13.74138 * 14 13 12 16 16 N 1.47811 * 86.03642 * 222.08692 * 15 14 13 17 17 C 1.36938 * 134.45712 * 204.64673 * 16 15 14 18 18 H 1.08006 * 119.99731 * 179.86683 * 17 16 15 19 19 C 1.38810 * 119.99900 * 359.86196 * 17 16 15 20 20 N 1.31615 * 120.00084 * 0.02562 * 19 17 16 21 21 Si 1.86808 * 119.99728 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47171 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.46783 * 120.00280 * 21 19 17 24 24 H 1.48496 * 109.46765 * 240.00006 * 21 19 17 25 25 C 1.47587 * 91.05119 * 24.54774 * 16 15 14 26 26 N 1.28721 * 108.26102 * 0.22816 * 13 12 11 27 27 N 1.28636 * 110.17709 * 0.02562 * 26 13 12 28 28 H 1.08994 * 109.46818 * 299.99444 * 1 2 3 29 29 H 1.09001 * 109.46786 * 59.99886 * 1 2 3 30 30 H 1.09002 * 109.46577 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47222 * 240.00663 * 2 1 3 32 32 H 1.08997 * 109.47389 * 119.99726 * 2 1 3 33 33 H 1.08998 * 109.46618 * 299.99975 * 5 3 2 34 34 H 1.09007 * 109.46695 * 59.99801 * 5 3 2 35 35 H 1.08996 * 109.47416 * 179.97438 * 5 3 2 36 36 H 1.08998 * 109.47160 * 55.00608 * 6 3 2 37 37 H 1.08996 * 109.47236 * 294.99996 * 6 3 2 38 38 H 0.96996 * 120.00676 * 359.97438 * 9 7 6 39 39 H 1.09004 * 109.46926 * 59.99730 * 10 9 7 40 40 H 1.09001 * 109.47077 * 300.00602 * 10 9 7 41 41 H 1.08002 * 126.91502 * 0.05047 * 12 11 10 42 42 H 1.09004 * 112.94415 * 145.33322 * 14 13 12 43 43 H 1.09001 * 113.77001 * 336.34585 * 15 14 13 44 44 H 1.08996 * 113.77272 * 107.74936 * 15 14 13 45 45 H 0.97005 * 119.99940 * 180.02562 * 20 19 17 46 46 H 1.09000 * 113.76860 * 221.15477 * 25 16 15 47 47 H 1.09000 * 113.86642 * 89.77210 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 1.6352 2.1266 1.3074 6 6 3.5648 1.4444 -0.1257 7 6 4.0569 2.8635 -0.2492 8 8 3.2660 3.7828 -0.2373 9 7 5.3759 3.1109 -0.3728 10 6 5.8544 4.4903 -0.4934 11 6 7.3562 4.4923 -0.6171 12 6 8.0743 4.5243 -1.7639 13 7 9.3759 4.5173 -1.3941 14 6 10.5261 4.5483 -2.3008 15 6 10.1640 4.9255 -3.7487 16 7 11.0976 3.8533 -4.1530 17 6 11.8389 3.6001 -5.2761 18 1 12.4637 2.7204 -5.3238 19 6 11.7872 4.4740 -6.3534 20 7 11.0261 5.5462 -6.2951 21 14 12.7980 4.1282 -7.8859 22 1 13.5638 2.8696 -7.7002 23 1 11.8928 3.9897 -9.0549 24 1 13.7412 5.2509 -8.1204 25 6 10.9120 3.1668 -2.8597 26 7 9.4297 4.4784 -0.1086 27 7 8.2419 4.4590 0.3849 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 0.5489 2.1252 1.3969 34 1 2.0699 1.5875 2.1492 35 1 1.9988 3.1541 1.3076 36 1 3.8571 0.8802 -1.0113 37 1 4.0030 0.9837 0.7596 38 1 6.0086 2.3757 -0.3819 39 1 5.5624 5.0549 0.3922 40 1 5.4159 4.9509 -1.3787 41 1 7.6865 4.5543 -2.7715 42 1 11.3692 5.1101 -1.8987 43 1 9.1247 4.7241 -4.0084 44 1 10.4897 5.9250 -4.0369 45 1 10.9897 6.1567 -7.0480 46 1 11.8338 2.7646 -2.4395 47 1 10.0934 2.4470 -2.8560 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107162126.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:12 Heat of formation + Delta-G solvation = 99.420599 kcal Electronic energy + Delta-G solvation = -26274.664120 eV Core-core repulsion = 22496.185051 eV Total energy + Delta-G solvation = -3778.479069 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.09865 -39.97772 -38.40236 -36.74786 -35.14618 -33.43881 -32.05439 -31.53631 -30.77750 -28.26711 -27.94804 -26.38753 -25.29768 -24.44046 -24.06988 -21.96708 -21.16490 -20.76437 -19.99813 -19.64948 -17.64337 -17.15802 -16.66577 -16.39365 -15.93582 -15.56414 -15.23551 -15.14959 -14.74767 -14.47078 -14.12755 -14.09046 -13.66440 -13.37917 -13.02730 -12.96857 -12.70502 -12.28261 -12.17112 -12.14382 -11.99523 -11.86782 -11.58870 -11.40151 -11.21275 -11.08396 -11.01236 -10.97214 -10.87294 -10.79795 -10.54948 -10.23619 -9.96452 -9.89947 -9.58468 -9.16652 -9.12778 -9.06375 -7.29289 -6.08016 -3.43494 1.78847 2.41658 2.55955 2.61221 3.23705 3.29598 3.32017 3.34916 4.19016 4.33368 4.49989 4.52639 4.62576 4.68586 4.70872 4.87552 4.96905 5.01051 5.12323 5.17365 5.22227 5.30598 5.37714 5.41516 5.44505 5.50072 5.53645 5.59254 5.71942 5.73385 5.80781 5.82150 5.96078 6.01852 6.07517 6.13245 6.16529 6.22789 6.26968 6.36722 6.50420 6.76403 6.99707 7.13251 7.39387 7.64491 8.12821 8.70643 8.72414 9.38569 10.15771 11.09272 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.016668 B = 0.002180 C = 0.002024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.484656 B =12839.153058 C =13833.998175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.076 4.076 4 H 0.078 0.922 5 C -0.154 4.154 6 C -0.139 4.139 7 C 0.514 3.486 8 O -0.539 6.539 9 N -0.725 5.725 10 C 0.215 3.785 11 C -0.063 4.063 12 C -0.015 4.015 13 N -0.265 5.265 14 C 0.077 3.923 15 C 0.163 3.837 16 N -0.599 5.599 17 C -0.232 4.232 18 H 0.088 0.912 19 C -0.001 4.001 20 N -0.919 5.919 21 Si 0.920 3.080 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.287 1.287 25 C 0.120 3.880 26 N -0.089 5.089 27 N -0.268 5.268 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.053 0.947 34 H 0.046 0.954 35 H 0.074 0.926 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.402 0.598 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.191 0.809 42 H 0.132 0.868 43 H 0.041 0.959 44 H 0.092 0.908 45 H 0.259 0.741 46 H 0.062 0.938 47 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.797 -7.935 11.275 20.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.095 4.095 4 H 0.097 0.903 5 C -0.212 4.212 6 C -0.179 4.179 7 C 0.301 3.699 8 O -0.416 6.416 9 N -0.378 5.378 10 C 0.090 3.910 11 C -0.202 4.202 12 C -0.169 4.169 13 N -0.057 5.057 14 C -0.025 4.025 15 C 0.037 3.963 16 N -0.325 5.325 17 C -0.359 4.359 18 H 0.106 0.894 19 C -0.199 4.199 20 N -0.565 5.565 21 Si 0.749 3.251 22 H -0.202 1.202 23 H -0.214 1.214 24 H -0.214 1.214 25 C -0.007 4.007 26 N -0.068 5.068 27 N -0.134 5.134 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.093 0.907 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.236 0.764 39 H 0.101 0.899 40 H 0.103 0.897 41 H 0.208 0.792 42 H 0.150 0.850 43 H 0.059 0.941 44 H 0.110 0.890 45 H 0.069 0.931 46 H 0.080 0.920 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -14.243 -7.222 12.170 20.078 hybrid contribution 0.354 -0.490 -1.985 2.075 sum -13.889 -7.712 10.185 18.871 Atomic orbital electron populations 1.21807 0.95759 1.01401 1.02101 1.21600 0.96174 0.96151 1.01924 1.20918 0.92667 0.95955 0.99937 0.90336 1.21999 1.01111 1.02198 0.95845 1.21784 0.97843 0.93919 1.04308 1.20689 0.81756 0.91771 0.75698 1.90670 1.54575 1.46649 1.49748 1.46120 1.07697 1.09058 1.74887 1.19267 0.84978 0.83477 1.03298 1.21742 0.96810 1.11886 0.89727 1.23508 0.84017 1.07368 1.02002 1.47917 1.07771 1.43799 1.06247 1.25290 0.86073 1.02339 0.88793 1.22747 0.94113 0.96852 0.82617 1.45680 1.49276 1.23892 1.13674 1.19051 1.18974 1.07429 0.90444 0.89424 1.24860 0.99578 0.96962 0.98497 1.69769 1.41389 1.13561 1.31738 0.85942 0.79191 0.77714 0.82261 1.20199 1.21414 1.21363 1.22928 0.99135 0.91974 0.86681 1.78275 1.17459 1.19665 0.91405 1.75020 0.94948 1.16560 1.26899 0.92406 0.92706 0.92944 0.91994 0.91987 0.92783 0.93463 0.90669 0.88864 0.88898 0.76357 0.89859 0.89705 0.79240 0.85029 0.94093 0.89011 0.93123 0.91964 0.93979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.67 37.16 0.36 -0.62 16 2 C -0.12 -0.80 5.40 -26.73 -0.14 -0.94 16 3 C -0.08 -0.62 2.04 -90.61 -0.18 -0.81 16 4 H 0.08 0.76 7.95 -51.93 -0.41 0.35 16 5 C -0.15 -1.37 8.69 37.16 0.32 -1.05 16 6 C -0.14 -1.07 5.18 -27.88 -0.14 -1.22 16 7 C 0.51 5.58 7.55 -10.98 -0.08 5.50 16 8 O -0.54 -7.60 13.96 5.56 0.08 -7.53 16 9 N -0.73 -7.53 5.55 -61.47 -0.34 -7.87 16 10 C 0.21 2.53 6.23 -5.20 -0.03 2.49 16 11 C -0.06 -0.87 6.61 -82.78 -0.55 -1.42 16 12 C -0.02 -0.22 10.72 -17.05 -0.18 -0.40 16 13 N -0.26 -4.25 3.54 -56.31 -0.20 -4.45 16 14 C 0.08 1.31 5.14 -70.15 -0.36 0.95 16 15 C 0.16 3.31 6.90 -2.84 -0.02 3.29 16 16 N -0.60 -13.64 3.70 -177.89 -0.66 -14.30 16 17 C -0.23 -5.92 10.70 -15.06 -0.16 -6.08 16 18 H 0.09 2.16 7.83 -52.48 -0.41 1.75 16 19 C 0.00 -0.04 5.50 -17.43 -0.10 -0.13 16 20 N -0.92 -24.92 11.39 55.49 0.63 -24.28 16 21 Si 0.92 20.54 29.55 -169.99 -5.02 15.52 16 22 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 23 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 25 C 0.12 2.18 8.74 -2.96 -0.03 2.16 16 26 N -0.09 -1.53 13.17 60.35 0.79 -0.74 16 27 N -0.27 -4.39 12.41 33.29 0.41 -3.98 16 28 H 0.06 0.37 6.56 -51.93 -0.34 0.03 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.05 0.44 6.56 -51.93 -0.34 0.10 16 34 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.85 5.95 -51.93 -0.31 0.54 16 36 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.40 3.66 8.46 -40.82 -0.35 3.31 16 39 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 41 H 0.19 2.39 6.73 -52.49 -0.35 2.04 16 42 H 0.13 2.17 8.14 -51.93 -0.42 1.75 16 43 H 0.04 0.81 6.31 -51.93 -0.33 0.48 16 44 H 0.09 2.07 7.16 -51.93 -0.37 1.70 16 45 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 46 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 47 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 383.20 15.07 5.77 5.77 Total: -1.00 -30.00 383.20 -7.25 -37.25 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -7.42 Total: 2.89 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: -1.30 Total: 1.71 kcal Atomic # 7 Polarization: -56.26 SS G_CDS: 0.64 Total: -55.62 kcal Atomic # 8 Polarization: -7.60 SS G_CDS: 0.08 Total: -7.53 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -30.00 -7.25 -37.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107162126.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.675 kcal (2) G-P(sol) polarization free energy of solvation -30.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds