Wall clock time and date at job start Fri Apr 10 2020 18:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46833 * 2 1 4 4 H 1.08997 * 109.47830 * 305.00085 * 3 2 1 5 5 C 1.53005 * 109.47279 * 65.00225 * 3 2 1 6 6 C 1.53007 * 109.47081 * 184.99900 * 3 2 1 7 7 C 1.50706 * 109.46908 * 175.00197 * 6 3 2 8 8 O 1.21271 * 120.00215 * 0.02562 * 7 6 3 9 9 N 1.34773 * 119.99465 * 180.02562 * 7 6 3 10 10 C 1.46501 * 120.00017 * 179.97438 * 9 7 6 11 11 C 1.50695 * 109.47705 * 179.97438 * 10 9 7 12 12 C 1.35348 * 126.75026 * 94.99599 * 11 10 9 13 13 N 1.35317 * 106.17735 * 179.78015 * 12 11 10 14 14 C 1.46497 * 125.87017 * 180.21003 * 13 12 11 15 15 C 1.53942 * 113.74196 * 13.74138 * 14 13 12 16 16 N 1.47811 * 86.03642 * 222.08692 * 15 14 13 17 17 C 1.36938 * 134.45712 * 204.64673 * 16 15 14 18 18 H 1.08006 * 119.99731 * 179.86683 * 17 16 15 19 19 C 1.38810 * 119.99900 * 359.86196 * 17 16 15 20 20 N 1.31615 * 120.00084 * 0.02562 * 19 17 16 21 21 Si 1.86808 * 119.99728 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47171 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.46783 * 120.00280 * 21 19 17 24 24 H 1.48496 * 109.46765 * 240.00006 * 21 19 17 25 25 C 1.47587 * 91.05119 * 24.54774 * 16 15 14 26 26 N 1.28721 * 108.26102 * 0.22816 * 13 12 11 27 27 N 1.28636 * 110.17709 * 0.02562 * 26 13 12 28 28 H 1.08994 * 109.46818 * 299.99444 * 1 2 3 29 29 H 1.09001 * 109.46786 * 59.99886 * 1 2 3 30 30 H 1.09002 * 109.46577 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47222 * 240.00663 * 2 1 3 32 32 H 1.08997 * 109.47389 * 119.99726 * 2 1 3 33 33 H 1.08998 * 109.46618 * 299.99975 * 5 3 2 34 34 H 1.09007 * 109.46695 * 59.99801 * 5 3 2 35 35 H 1.08996 * 109.47416 * 179.97438 * 5 3 2 36 36 H 1.08998 * 109.47160 * 55.00608 * 6 3 2 37 37 H 1.08996 * 109.47236 * 294.99996 * 6 3 2 38 38 H 0.96996 * 120.00676 * 359.97438 * 9 7 6 39 39 H 1.09004 * 109.46926 * 59.99730 * 10 9 7 40 40 H 1.09001 * 109.47077 * 300.00602 * 10 9 7 41 41 H 1.08002 * 126.91502 * 0.05047 * 12 11 10 42 42 H 1.09004 * 112.94415 * 145.33322 * 14 13 12 43 43 H 1.09001 * 113.77001 * 336.34585 * 15 14 13 44 44 H 1.08996 * 113.77272 * 107.74936 * 15 14 13 45 45 H 0.97005 * 119.99940 * 180.02562 * 20 19 17 46 46 H 1.09000 * 113.76860 * 221.15477 * 25 16 15 47 47 H 1.09000 * 113.86642 * 89.77210 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 1.6352 2.1266 1.3074 6 6 3.5648 1.4444 -0.1257 7 6 4.0569 2.8635 -0.2492 8 8 3.2660 3.7828 -0.2373 9 7 5.3759 3.1109 -0.3728 10 6 5.8544 4.4903 -0.4934 11 6 7.3562 4.4923 -0.6171 12 6 8.0743 4.5243 -1.7639 13 7 9.3759 4.5173 -1.3941 14 6 10.5261 4.5483 -2.3008 15 6 10.1640 4.9255 -3.7487 16 7 11.0976 3.8533 -4.1530 17 6 11.8389 3.6001 -5.2761 18 1 12.4637 2.7204 -5.3238 19 6 11.7872 4.4740 -6.3534 20 7 11.0261 5.5462 -6.2951 21 14 12.7980 4.1282 -7.8859 22 1 13.5638 2.8696 -7.7002 23 1 11.8928 3.9897 -9.0549 24 1 13.7412 5.2509 -8.1204 25 6 10.9120 3.1668 -2.8597 26 7 9.4297 4.4784 -0.1086 27 7 8.2419 4.4590 0.3849 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 0.5489 2.1252 1.3969 34 1 2.0699 1.5875 2.1492 35 1 1.9988 3.1541 1.3076 36 1 3.8571 0.8802 -1.0113 37 1 4.0030 0.9837 0.7596 38 1 6.0086 2.3757 -0.3819 39 1 5.5624 5.0549 0.3922 40 1 5.4159 4.9509 -1.3787 41 1 7.6865 4.5543 -2.7715 42 1 11.3692 5.1101 -1.8987 43 1 9.1247 4.7241 -4.0084 44 1 10.4897 5.9250 -4.0369 45 1 10.9897 6.1567 -7.0480 46 1 11.8338 2.7646 -2.4395 47 1 10.0934 2.4470 -2.8560 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107162126.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:11 Heat of formation + Delta-G solvation = 80.505024 kcal Electronic energy + Delta-G solvation = -26275.484361 eV Core-core repulsion = 22496.185051 eV Total energy + Delta-G solvation = -3779.299310 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.35396 -40.84346 -39.94249 -37.42521 -36.14075 -34.95304 -33.66676 -32.60867 -31.48717 -29.72092 -29.01113 -27.37220 -26.78019 -26.00777 -24.72659 -23.42314 -22.35876 -21.57059 -21.13671 -20.66776 -19.05030 -18.51206 -17.80981 -17.51593 -16.98131 -16.83475 -16.54653 -16.08400 -15.86703 -15.67837 -15.21901 -14.92791 -14.79036 -14.42549 -14.41863 -13.92949 -13.71917 -13.57924 -13.40864 -13.32300 -12.98055 -12.81875 -12.75939 -12.70439 -12.59483 -12.43071 -12.15158 -12.06593 -11.79460 -11.73196 -11.71975 -11.50503 -11.36070 -11.06332 -10.92480 -10.80042 -10.24797 -10.06286 -9.11148 -8.01445 -5.36654 0.56559 1.25082 1.29167 1.47826 1.49579 1.58237 1.72023 2.41905 2.45727 3.07314 3.12214 3.31144 3.33908 3.73466 3.81453 3.90332 3.91636 4.00264 4.04423 4.15659 4.30510 4.48150 4.50568 4.57111 4.59968 4.67066 4.69037 4.75298 4.78533 4.87628 4.92158 4.96129 5.00790 5.05348 5.10092 5.18257 5.21635 5.26965 5.34263 5.36641 5.40765 5.57949 5.63865 5.65972 5.77052 6.57452 6.80222 7.29583 7.45595 7.48553 8.33347 9.15529 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.016668 B = 0.002180 C = 0.002024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.484656 B =12839.153058 C =13833.998175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.116 4.116 3 C -0.075 4.075 4 H 0.059 0.941 5 C -0.152 4.152 6 C -0.133 4.133 7 C 0.512 3.488 8 O -0.575 6.575 9 N -0.719 5.719 10 C 0.219 3.781 11 C -0.048 4.048 12 C -0.014 4.014 13 N -0.268 5.268 14 C 0.104 3.896 15 C 0.165 3.835 16 N -0.628 5.628 17 C -0.236 4.236 18 H 0.092 0.908 19 C -0.057 4.057 20 N -0.949 5.949 21 Si 0.979 3.021 22 H -0.264 1.264 23 H -0.292 1.292 24 H -0.292 1.292 25 C 0.126 3.874 26 N -0.108 5.108 27 N -0.282 5.282 28 H 0.055 0.945 29 H 0.048 0.952 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.048 0.952 36 H 0.114 0.886 37 H 0.112 0.888 38 H 0.411 0.589 39 H 0.076 0.924 40 H 0.093 0.907 41 H 0.207 0.793 42 H 0.138 0.862 43 H 0.047 0.953 44 H 0.063 0.937 45 H 0.253 0.747 46 H 0.076 0.924 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.002 -9.853 11.725 21.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.154 4.154 3 C -0.094 4.094 4 H 0.078 0.922 5 C -0.209 4.209 6 C -0.172 4.172 7 C 0.300 3.700 8 O -0.455 6.455 9 N -0.372 5.372 10 C 0.094 3.906 11 C -0.188 4.188 12 C -0.167 4.167 13 N -0.061 5.061 14 C 0.002 3.998 15 C 0.039 3.961 16 N -0.355 5.355 17 C -0.364 4.364 18 H 0.109 0.891 19 C -0.251 4.251 20 N -0.596 5.596 21 Si 0.807 3.193 22 H -0.188 1.188 23 H -0.219 1.219 24 H -0.219 1.219 25 C 0.000 4.000 26 N -0.087 5.087 27 N -0.148 5.148 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.132 0.868 37 H 0.130 0.870 38 H 0.246 0.754 39 H 0.095 0.905 40 H 0.111 0.889 41 H 0.224 0.776 42 H 0.155 0.845 43 H 0.065 0.935 44 H 0.082 0.918 45 H 0.062 0.938 46 H 0.094 0.906 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.437 -9.181 12.664 21.286 hybrid contribution 0.332 0.100 -2.028 2.058 sum -14.105 -9.081 10.636 19.863 Atomic orbital electron populations 1.21823 0.95813 1.01885 1.01738 1.21566 0.96125 0.94875 1.02787 1.20895 0.93047 0.96792 0.98667 0.92237 1.21953 1.01351 1.00796 0.96790 1.21829 0.97372 0.91897 1.06141 1.21266 0.81344 0.92745 0.74640 1.90666 1.55423 1.48045 1.51381 1.46052 1.07901 1.08669 1.74564 1.19216 0.83595 0.84437 1.03400 1.21943 0.97371 1.10495 0.88956 1.23830 0.83344 1.06660 1.02898 1.47719 1.07979 1.44381 1.06017 1.24696 0.86215 1.01409 0.87471 1.22618 0.93890 0.95028 0.84609 1.45916 1.49644 1.25518 1.14416 1.19379 1.18680 1.07085 0.91275 0.89066 1.25604 1.01095 0.97186 1.01209 1.69920 1.43148 1.14469 1.32107 0.85003 0.77674 0.77687 0.78887 1.18844 1.21943 1.21932 1.23019 1.00112 0.92460 0.84436 1.78282 1.17951 1.20865 0.91606 1.75008 0.95212 1.16932 1.27648 0.92642 0.93273 0.92017 0.91154 0.91022 0.92474 0.92436 0.93331 0.86803 0.86965 0.75358 0.90548 0.88922 0.77638 0.84452 0.93495 0.91836 0.93804 0.90571 0.92787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.76 9.67 71.98 0.70 -1.06 16 2 C -0.12 -1.28 5.40 30.59 0.17 -1.11 16 3 C -0.08 -1.13 2.04 -10.79 -0.02 -1.15 16 4 H 0.06 1.13 7.95 -2.39 -0.02 1.11 16 5 C -0.15 -2.59 8.69 71.98 0.63 -1.97 16 6 C -0.13 -1.76 5.18 29.85 0.15 -1.61 16 7 C 0.51 10.46 7.55 87.66 0.66 11.12 16 8 O -0.58 -16.13 13.96 -3.00 -0.04 -16.17 16 9 N -0.72 -13.70 5.55 -466.80 -2.59 -16.29 16 10 C 0.22 4.86 6.23 85.63 0.53 5.40 16 11 C -0.05 -1.26 6.61 41.59 0.28 -0.99 16 12 C -0.01 -0.38 10.72 83.49 0.89 0.52 16 13 N -0.27 -8.20 3.54 -332.05 -1.18 -9.37 16 14 C 0.10 3.41 5.14 46.75 0.24 3.65 16 15 C 0.17 6.62 6.90 86.44 0.60 7.22 16 16 N -0.63 -28.11 3.70 -716.72 -2.65 -30.77 16 17 C -0.24 -11.92 10.70 84.03 0.90 -11.02 16 18 H 0.09 4.39 7.83 -2.91 -0.02 4.37 16 19 C -0.06 -2.96 5.50 84.86 0.47 -2.49 16 20 N -0.95 -52.10 11.39 21.65 0.25 -51.85 16 21 Si 0.98 42.19 29.55 68.60 2.03 44.22 16 22 H -0.26 -10.67 7.11 99.48 0.71 -9.97 16 23 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 24 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 25 C 0.13 4.34 8.74 86.48 0.76 5.10 16 26 N -0.11 -3.58 13.17 37.02 0.49 -3.09 16 27 N -0.28 -8.84 12.41 -48.60 -0.60 -9.44 16 28 H 0.05 0.64 6.56 -2.39 -0.02 0.63 16 29 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.06 0.91 6.56 -2.39 -0.02 0.89 16 34 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 35 H 0.05 1.10 5.95 -2.39 -0.01 1.09 16 36 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.41 6.51 8.46 -92.71 -0.78 5.73 16 39 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.21 4.78 6.73 -2.91 -0.02 4.76 16 42 H 0.14 4.37 8.14 -2.38 -0.02 4.35 16 43 H 0.05 1.82 6.31 -2.39 -0.02 1.80 16 44 H 0.06 2.92 7.16 -2.39 -0.02 2.90 16 45 H 0.25 13.58 8.31 -92.70 -0.77 12.81 16 46 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 47 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -64.22 383.20 2.83 -61.38 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: 0.19 Total: 19.79 kcal Atomic # 6 Polarization: 4.66 SS G_CDS: 6.94 Total: 11.60 kcal Atomic # 7 Polarization: -114.53 SS G_CDS: -6.29 Total: -120.82 kcal Atomic # 8 Polarization: -16.13 SS G_CDS: -0.04 Total: -16.17 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Total: -64.22 2.83 -61.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107162126.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.889 kcal (2) G-P(sol) polarization free energy of solvation -64.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds