Wall clock time and date at job start Fri Apr 10 2020 18:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.53002 * 109.47233 * 240.00343 * 2 1 3 5 5 H 1.09002 * 109.47075 * 59.99068 * 4 2 1 6 6 C 1.52997 * 109.47415 * 179.97438 * 4 2 1 7 7 C 1.50703 * 109.46966 * 299.99716 * 4 2 1 8 8 O 1.21284 * 120.00087 * 0.02562 * 7 4 2 9 9 N 1.34777 * 119.99991 * 179.97438 * 7 4 2 10 10 C 1.46507 * 119.99713 * 180.02562 * 9 7 4 11 11 C 1.50699 * 109.46949 * 180.02562 * 10 9 7 12 12 C 1.35347 * 126.75081 * 94.71090 * 11 10 9 13 13 N 1.35316 * 106.17424 * 179.85683 * 12 11 10 14 14 C 1.46503 * 125.87038 * 180.19060 * 13 12 11 15 15 C 1.53944 * 113.73870 * 14.02604 * 14 13 12 16 16 N 1.47806 * 86.03796 * 222.08573 * 15 14 13 17 17 C 1.36936 * 134.46220 * 204.64611 * 16 15 14 18 18 H 1.08001 * 120.00863 * 179.86943 * 17 16 15 19 19 C 1.38819 * 119.99579 * 359.87059 * 17 16 15 20 20 N 1.31620 * 120.00087 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99722 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.47200 * 90.00030 * 21 19 17 23 23 H 1.48506 * 109.46775 * 209.99842 * 21 19 17 24 24 H 1.48495 * 109.47247 * 329.99500 * 21 19 17 25 25 C 1.47586 * 91.04949 * 24.55288 * 16 15 14 26 26 N 1.28716 * 108.26132 * 0.41520 * 13 12 11 27 27 N 1.28636 * 110.17887 * 359.73552 * 26 13 12 28 28 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 30 30 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 31 31 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 32 32 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 33 33 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 34 34 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 35 35 H 1.09000 * 109.47140 * 300.00024 * 6 4 2 36 36 H 1.09002 * 109.47045 * 59.99931 * 6 4 2 37 37 H 1.08998 * 109.47171 * 179.97438 * 6 4 2 38 38 H 0.96992 * 119.99924 * 359.97438 * 9 7 4 39 39 H 1.09002 * 109.46822 * 299.99691 * 10 9 7 40 40 H 1.08996 * 109.46955 * 60.00216 * 10 9 7 41 41 H 1.07997 * 126.91764 * 359.97438 * 12 11 10 42 42 H 1.09000 * 112.94668 * 145.61955 * 14 13 12 43 43 H 1.08997 * 113.77569 * 336.35309 * 15 14 13 44 44 H 1.09007 * 113.76508 * 107.75255 * 15 14 13 45 45 H 0.96997 * 119.99620 * 179.97438 * 20 19 17 46 46 H 1.08999 * 113.76859 * 221.14892 * 25 16 15 47 47 H 1.08999 * 113.86662 * 89.76618 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 1 1.6766 -0.2074 -2.1393 6 6 3.5700 -0.7206 -1.2497 7 6 1.5377 -2.1420 -1.2493 8 8 0.8401 -2.5386 -0.3399 9 7 1.8629 -2.9717 -2.2604 10 6 1.3741 -4.3529 -2.2607 11 6 1.8766 -5.0633 -3.4911 12 6 2.9868 -5.8316 -3.5860 13 7 3.0389 -6.2619 -4.8678 14 6 4.0705 -7.1302 -5.4406 15 6 4.9538 -7.8218 -4.3863 16 7 6.0887 -7.5055 -5.2788 17 6 7.3324 -8.0434 -5.4764 18 1 7.9948 -7.6160 -6.2146 19 6 7.7419 -9.1384 -4.7278 20 7 6.9349 -9.6592 -3.8277 21 14 9.4387 -9.8719 -4.9968 22 1 10.4142 -9.2057 -4.0971 23 1 9.4024 -11.3260 -4.6977 24 1 9.8482 -9.6671 -6.4094 25 6 5.3428 -6.3791 -5.8729 26 7 2.0289 -5.7733 -5.4987 27 7 1.3161 -5.0538 -4.7057 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8934 -0.5139 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 3.1299 1.4426 -0.0005 35 1 3.9330 0.3071 -1.2498 36 1 3.9337 -1.2343 -0.3597 37 1 3.9333 -1.2348 -2.1394 38 1 2.4199 -2.6542 -2.9882 39 1 1.7375 -4.8670 -1.3709 40 1 0.2842 -4.3525 -2.2605 41 1 3.6887 -6.0575 -2.7970 42 1 3.6816 -7.8082 -6.2003 43 1 4.9878 -7.2993 -3.4304 44 1 4.7595 -8.8894 -4.2824 45 1 7.2210 -10.4245 -3.3050 46 1 5.4586 -6.2968 -6.9536 47 1 5.4904 -5.4309 -5.3559 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107216205.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:19 Heat of formation + Delta-G solvation = 104.569398 kcal Electronic energy + Delta-G solvation = -26755.059229 eV Core-core repulsion = 22976.803429 eV Total energy + Delta-G solvation = -3778.255800 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.09973 -40.22545 -38.40434 -36.53547 -35.17586 -33.46135 -32.11422 -31.65509 -30.56879 -28.00607 -27.58554 -26.68145 -25.31154 -24.49879 -24.30903 -21.97491 -21.40837 -20.97314 -19.81991 -19.63915 -17.74370 -17.23526 -16.68440 -16.42581 -15.75933 -15.42488 -15.15274 -15.00209 -14.70356 -14.38357 -14.12508 -14.07648 -13.65162 -13.34177 -12.96862 -12.78037 -12.47322 -12.36004 -12.28870 -12.23806 -12.13012 -11.87189 -11.77120 -11.41953 -11.22300 -11.18358 -10.99268 -10.97833 -10.93066 -10.78550 -10.55211 -10.26457 -9.93038 -9.78929 -9.57735 -9.15604 -9.11661 -9.05008 -7.29379 -6.07815 -3.43332 1.78851 2.41454 2.54945 2.61265 3.24142 3.29497 3.31410 3.34184 4.19232 4.33330 4.38175 4.54103 4.62997 4.68803 4.70810 4.89518 4.97442 5.09021 5.12670 5.17334 5.19981 5.26557 5.37634 5.45760 5.48428 5.53825 5.58630 5.60751 5.66299 5.72820 5.74028 5.87606 5.98644 6.01826 6.07453 6.13247 6.15824 6.21302 6.27055 6.42599 6.50474 6.76316 6.99718 7.13073 7.39394 7.64494 8.12923 8.70738 8.72483 9.38669 10.15890 11.09430 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.017285 B = 0.002404 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.545920 B =11644.908114 C =12521.747347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.075 4.075 3 C -0.150 4.150 4 C -0.107 4.107 5 H 0.096 0.904 6 C -0.148 4.148 7 C 0.519 3.481 8 O -0.537 6.537 9 N -0.723 5.723 10 C 0.215 3.785 11 C -0.063 4.063 12 C -0.015 4.015 13 N -0.265 5.265 14 C 0.077 3.923 15 C 0.164 3.836 16 N -0.599 5.599 17 C -0.233 4.233 18 H 0.087 0.913 19 C -0.001 4.001 20 N -0.919 5.919 21 Si 0.920 3.080 22 H -0.286 1.286 23 H -0.287 1.287 24 H -0.278 1.278 25 C 0.120 3.880 26 N -0.089 5.089 27 N -0.268 5.268 28 H 0.083 0.917 29 H 0.049 0.951 30 H 0.045 0.955 31 H 0.076 0.924 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.402 0.598 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.190 0.810 42 H 0.132 0.868 43 H 0.041 0.959 44 H 0.092 0.908 45 H 0.259 0.741 46 H 0.062 0.938 47 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.454 16.510 5.003 19.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.094 4.094 3 C -0.207 4.207 4 C -0.128 4.128 5 H 0.114 0.886 6 C -0.205 4.205 7 C 0.305 3.695 8 O -0.414 6.414 9 N -0.375 5.375 10 C 0.090 3.910 11 C -0.202 4.202 12 C -0.169 4.169 13 N -0.057 5.057 14 C -0.025 4.025 15 C 0.037 3.963 16 N -0.325 5.325 17 C -0.360 4.360 18 H 0.105 0.895 19 C -0.199 4.199 20 N -0.565 5.565 21 Si 0.749 3.251 22 H -0.213 1.213 23 H -0.213 1.213 24 H -0.203 1.203 25 C -0.007 4.007 26 N -0.068 5.068 27 N -0.134 5.134 28 H 0.102 0.898 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.095 0.905 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.236 0.764 39 H 0.103 0.897 40 H 0.102 0.898 41 H 0.207 0.793 42 H 0.150 0.850 43 H 0.059 0.941 44 H 0.110 0.890 45 H 0.069 0.931 46 H 0.080 0.920 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -9.405 16.003 4.311 19.056 hybrid contribution 1.922 -0.466 0.468 2.032 sum -7.483 15.537 4.779 17.896 Atomic orbital electron populations 1.22078 0.94710 1.04105 1.00795 1.20893 0.96526 0.95240 0.96731 1.21931 1.01122 0.95816 1.01854 1.21402 0.97489 0.92765 1.01167 0.88583 1.21856 0.92871 1.03063 1.02748 1.20638 0.79865 0.87539 0.81417 1.90637 1.37776 1.77143 1.35875 1.46108 1.53846 1.12054 1.25497 1.19275 0.99485 0.80259 0.92021 1.21737 0.96766 1.05723 0.95932 1.23503 1.01737 1.01922 0.89725 1.47916 1.18490 1.31843 1.07479 1.25289 0.83315 0.92569 1.01312 1.22745 0.82136 1.00482 0.90939 1.45675 1.14263 1.30660 1.41926 1.19001 0.88920 1.09869 1.18168 0.89484 1.24860 0.98939 0.98216 0.97849 1.69760 1.35858 1.25351 1.25507 0.86011 0.82767 0.78373 0.77954 1.21266 1.21339 1.20323 1.22929 0.86623 0.92411 0.98766 1.78274 0.96465 1.10678 1.21375 1.75020 1.22780 1.15302 1.00319 0.89798 0.93148 0.93556 0.90545 0.92716 0.92519 0.92341 0.91088 0.91886 0.92071 0.76367 0.89692 0.89828 0.79253 0.85026 0.94102 0.89021 0.93070 0.91965 0.93988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 8.87 37.16 0.33 -1.17 16 2 C -0.08 -0.64 2.15 -90.62 -0.19 -0.84 16 3 C -0.15 -0.99 8.84 37.16 0.33 -0.67 16 4 C -0.11 -0.89 2.32 -91.77 -0.21 -1.10 16 5 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 6 C -0.15 -1.05 8.74 37.16 0.32 -0.73 16 7 C 0.52 5.76 6.86 -10.98 -0.08 5.68 16 8 O -0.54 -7.61 13.66 5.55 0.08 -7.53 16 9 N -0.72 -7.62 5.44 -61.47 -0.33 -7.96 16 10 C 0.21 2.53 6.23 -5.19 -0.03 2.50 16 11 C -0.06 -0.87 6.61 -82.78 -0.55 -1.42 16 12 C -0.02 -0.22 10.72 -17.05 -0.18 -0.40 16 13 N -0.26 -4.25 3.54 -56.30 -0.20 -4.45 16 14 C 0.08 1.31 5.14 -70.15 -0.36 0.95 16 15 C 0.16 3.31 6.90 -2.84 -0.02 3.29 16 16 N -0.60 -13.64 3.70 -177.89 -0.66 -14.30 16 17 C -0.23 -5.93 10.70 -15.06 -0.16 -6.09 16 18 H 0.09 2.14 7.83 -52.49 -0.41 1.73 16 19 C 0.00 -0.03 5.50 -17.43 -0.10 -0.12 16 20 N -0.92 -24.91 11.39 55.49 0.63 -24.28 16 21 Si 0.92 20.53 29.55 -169.99 -5.02 15.50 16 22 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 25 C 0.12 2.18 8.74 -2.96 -0.03 2.15 16 26 N -0.09 -1.53 13.17 60.35 0.79 -0.73 16 27 N -0.27 -4.39 12.41 33.29 0.41 -3.98 16 28 H 0.08 0.99 5.51 -51.93 -0.29 0.70 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.08 0.74 8.10 -51.93 -0.42 0.32 16 32 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.35 6.43 -51.93 -0.33 0.01 16 35 H 0.07 0.42 6.43 -51.93 -0.33 0.08 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.42 7.57 -51.93 -0.39 0.02 16 38 H 0.40 3.78 7.88 -40.82 -0.32 3.46 16 39 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 41 H 0.19 2.39 6.74 -52.49 -0.35 2.04 16 42 H 0.13 2.17 8.14 -51.93 -0.42 1.75 16 43 H 0.04 0.81 6.31 -51.93 -0.33 0.48 16 44 H 0.09 2.07 7.17 -51.93 -0.37 1.70 16 45 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 46 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 47 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 380.33 15.07 5.73 5.73 Total: -1.00 -29.75 380.33 -6.83 -36.59 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -7.34 Total: 3.36 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: -0.93 Total: 2.05 kcal Atomic # 7 Polarization: -56.34 SS G_CDS: 0.65 Total: -55.69 kcal Atomic # 8 Polarization: -7.61 SS G_CDS: 0.08 Total: -7.53 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -29.75 -6.83 -36.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107216205.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.155 kcal (2) G-P(sol) polarization free energy of solvation -29.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds