Wall clock time and date at job start Fri Apr 10 2020 18:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34774 * 120.00032 * 2 1 4 4 O 1.21281 * 119.99903 * 5.04048 * 3 2 1 5 5 C 1.50702 * 120.00031 * 185.05098 * 3 2 1 6 6 C 1.50701 * 112.85231 * 56.23652 * 5 3 2 7 7 O 1.21275 * 119.99937 * 234.88660 * 6 5 3 8 8 N 1.34772 * 119.99752 * 54.89150 * 6 5 3 9 9 C 1.46498 * 120.00178 * 185.02932 * 8 6 5 10 10 H 1.09004 * 110.68538 * 37.05102 * 9 8 6 11 11 C 1.54845 * 110.63208 * 160.04097 * 9 8 6 12 12 C 1.56309 * 103.40750 * 118.35880 * 11 9 8 13 13 H 1.08994 * 115.71466 * 158.93134 * 12 11 9 14 14 C 1.55841 * 105.08351 * 288.43141 * 12 11 9 15 15 C 1.54225 * 103.56476 * 71.68539 * 14 12 11 16 16 C 1.55843 * 103.56440 * 0.02562 * 15 14 12 17 17 H 1.08996 * 116.12133 * 159.06187 * 16 15 14 18 18 N 1.50240 * 100.83557 * 33.12891 * 12 11 9 19 19 C 1.36932 * 130.84071 * 126.10383 * 18 12 11 20 20 H 1.08002 * 119.99935 * 179.65770 * 19 18 12 21 21 C 1.38813 * 120.00147 * 359.38667 * 19 18 12 22 22 N 1.31616 * 119.99711 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00067 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47224 * 60.00107 * 23 21 19 25 25 H 1.48508 * 109.46950 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47248 * 299.99954 * 23 21 19 27 27 C 1.53779 * 113.69182 * 187.51051 * 5 3 2 28 28 C 1.53784 * 87.08417 * 89.12170 * 27 5 3 29 29 C 1.53783 * 113.61207 * 285.04356 * 5 3 2 30 30 H 1.09002 * 109.47093 * 60.00904 * 1 2 3 31 31 H 1.08998 * 109.47342 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47583 * 300.00520 * 1 2 3 33 33 H 0.96996 * 119.99706 * 179.97438 * 2 1 3 34 34 H 0.97006 * 120.00234 * 5.01942 * 8 6 5 35 35 H 1.09000 * 110.63189 * 236.98222 * 11 9 8 36 36 H 1.09000 * 110.62833 * 359.84168 * 11 9 8 37 37 H 1.09002 * 110.62725 * 190.09086 * 14 12 11 38 38 H 1.09001 * 110.62513 * 312.94885 * 14 12 11 39 39 H 1.09000 * 110.64251 * 241.43475 * 15 14 12 40 40 H 1.09005 * 110.49391 * 118.49524 * 15 14 12 41 41 H 0.97005 * 120.00127 * 180.02562 * 22 21 19 42 42 H 1.08997 * 113.61580 * 203.67254 * 27 5 3 43 43 H 1.09007 * 113.61056 * 334.57523 * 27 5 3 44 44 H 1.08997 * 113.61539 * 270.88860 * 28 27 5 45 45 H 1.08993 * 113.61124 * 139.97752 * 28 27 5 46 46 H 1.09004 * 113.61489 * 25.34693 * 29 5 3 47 47 H 1.08997 * 113.61648 * 156.25200 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5359 2.2155 0.0923 5 6 3.6415 1.1697 -0.1149 6 6 4.1357 0.4505 -1.3435 7 8 4.9399 -0.4509 -1.2361 8 7 3.6840 0.8090 -2.5616 9 6 4.0783 0.0402 -3.7446 10 1 4.1345 -1.0232 -3.5117 11 6 3.0927 0.2914 -4.9122 12 6 3.9959 0.9262 -6.0187 13 1 3.6127 0.8608 -7.0370 14 6 4.3263 2.3583 -5.5004 15 6 5.3061 2.1046 -4.3367 16 6 5.4405 0.5524 -4.3038 17 1 6.3294 0.1580 -3.8114 18 7 5.2965 0.2196 -5.7614 19 6 6.1052 -0.5009 -6.5993 20 1 7.0197 -0.9365 -6.2246 21 6 5.7469 -0.6762 -7.9289 22 7 4.6295 -0.1503 -8.3840 23 14 6.8504 -1.6584 -9.0719 24 1 6.9934 -3.0426 -8.5535 25 1 6.2482 -1.6972 -10.4288 26 1 8.1873 -1.0157 -9.1425 27 6 4.2740 2.5574 0.0828 28 6 4.3361 2.2285 1.5838 29 6 4.3588 0.7455 1.1775 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.9499 -0.8400 0.0004 34 1 3.0976 1.5761 -2.6551 35 1 2.6599 -0.6472 -5.2582 36 1 2.3088 0.9860 -4.6102 37 1 4.8060 2.9482 -6.2815 38 1 3.4239 2.8556 -5.1448 39 1 4.8924 2.4746 -3.3985 40 1 6.2707 2.5690 -4.5418 41 1 4.3788 -0.2731 -9.3130 42 1 5.2542 2.6608 -0.3825 43 1 3.6018 3.3816 -0.1561 44 1 3.4393 2.5175 2.1316 45 1 5.2544 2.5631 2.0663 46 1 3.7551 0.1069 1.8225 47 1 5.3622 0.3535 1.0115 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001110012537.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:26 Heat of formation + Delta-G solvation = -0.468824 kcal Electronic energy + Delta-G solvation = -28923.396657 eV Core-core repulsion = 25108.293307 eV Total energy + Delta-G solvation = -3815.103350 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.33763 -39.63389 -38.41481 -37.03160 -34.82760 -33.98658 -32.35188 -29.53449 -29.10207 -28.66374 -27.48901 -26.03783 -25.66000 -24.16113 -21.90295 -21.54090 -20.99089 -19.67954 -19.44001 -18.62970 -18.01743 -16.94263 -16.42633 -16.13420 -15.85695 -15.16150 -15.12098 -14.98164 -14.74790 -14.19027 -14.05904 -13.81949 -13.41144 -13.11015 -12.67980 -12.56755 -12.43425 -12.33891 -12.04463 -11.80432 -11.50682 -11.45502 -11.19811 -11.05590 -10.93168 -10.90572 -10.83549 -10.63524 -10.22531 -10.15538 -10.11764 -9.86523 -9.56706 -9.39825 -9.39228 -9.22978 -8.93840 -8.55566 -6.92829 -5.73690 -3.11774 2.26172 2.61359 2.92405 3.31750 3.40183 3.44030 3.45314 4.26407 4.30685 4.42800 4.45380 4.57119 4.75569 4.97706 5.19379 5.20357 5.25013 5.36841 5.44753 5.52995 5.54598 5.61142 5.69201 5.77086 5.79792 5.82066 5.82869 5.97680 6.04463 6.09709 6.11289 6.15051 6.27677 6.33116 6.51842 6.60015 6.64782 6.80032 6.94259 6.98517 7.14954 7.24917 7.51018 7.68292 7.79801 7.90139 8.15620 8.36142 9.09387 9.72093 10.52473 11.35894 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.021081 B = 0.003517 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.887992 B = 7960.028858 C = 8248.745932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.729 5.729 3 C 0.545 3.455 4 O -0.528 6.528 5 C -0.141 4.141 6 C 0.528 3.472 7 O -0.531 6.531 8 N -0.704 5.704 9 C 0.128 3.872 10 H 0.081 0.919 11 C -0.141 4.141 12 C 0.155 3.845 13 H 0.155 0.845 14 C -0.137 4.137 15 C -0.130 4.130 16 C 0.130 3.870 17 H 0.086 0.914 18 N -0.590 5.590 19 C -0.211 4.211 20 H 0.079 0.921 21 C -0.011 4.011 22 N -0.924 5.924 23 Si 0.917 3.083 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.286 1.286 27 C -0.107 4.107 28 C -0.141 4.141 29 C -0.102 4.102 30 H 0.062 0.938 31 H 0.077 0.923 32 H 0.061 0.939 33 H 0.405 0.595 34 H 0.396 0.604 35 H 0.065 0.935 36 H 0.053 0.947 37 H 0.055 0.945 38 H 0.045 0.955 39 H 0.051 0.949 40 H 0.051 0.949 41 H 0.254 0.746 42 H 0.095 0.905 43 H 0.090 0.910 44 H 0.084 0.916 45 H 0.077 0.923 46 H 0.072 0.928 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.787 3.217 17.956 19.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.380 5.380 3 C 0.330 3.670 4 O -0.404 6.404 5 C -0.147 4.147 6 C 0.312 3.688 7 O -0.408 6.408 8 N -0.354 5.354 9 C 0.022 3.978 10 H 0.099 0.901 11 C -0.181 4.181 12 C 0.048 3.952 13 H 0.172 0.828 14 C -0.177 4.177 15 C -0.170 4.170 16 C 0.021 3.979 17 H 0.104 0.896 18 N -0.310 5.310 19 C -0.339 4.339 20 H 0.096 0.904 21 C -0.207 4.207 22 N -0.572 5.572 23 Si 0.748 3.252 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.213 1.213 27 C -0.145 4.145 28 C -0.178 4.178 29 C -0.140 4.140 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.079 0.921 33 H 0.239 0.761 34 H 0.231 0.769 35 H 0.084 0.916 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.065 0.935 42 H 0.113 0.887 43 H 0.108 0.892 44 H 0.102 0.898 45 H 0.095 0.905 46 H 0.091 0.909 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -6.600 3.147 17.732 19.180 hybrid contribution 0.402 -0.591 -0.643 0.961 sum -6.198 2.556 17.089 18.357 Atomic orbital electron populations 1.21576 0.79060 1.02523 1.02441 1.45733 1.07995 1.08762 1.75528 1.19575 0.87880 0.83811 0.75730 1.90706 1.69551 1.31332 1.48778 1.22409 0.93350 1.01810 0.97160 1.19768 0.81794 0.83422 0.83843 1.90713 1.33130 1.30623 1.86322 1.46290 1.50027 1.32519 1.06599 1.22683 0.97159 0.95130 0.82817 0.90095 1.23374 0.96841 1.01128 0.96753 1.23857 0.85186 0.87183 0.98929 0.82817 1.22930 0.97300 1.00047 0.97400 1.22797 0.99042 0.97823 0.97309 1.23186 0.94729 0.93122 0.86895 0.89605 1.46470 1.22524 1.58890 1.03124 1.19017 1.01027 1.23989 0.89876 0.90366 1.24690 0.97828 1.01302 0.96840 1.69423 1.23533 1.49297 1.14945 0.86108 0.79535 0.79714 0.79890 1.21217 1.21576 1.21251 1.22799 1.01252 0.93606 0.96814 1.22871 1.02813 0.95765 0.96363 1.22828 1.01755 0.97224 0.92192 0.91934 0.90463 0.92078 0.76076 0.76938 0.91603 0.92852 0.92651 0.93643 0.93081 0.93048 0.93508 0.88676 0.89158 0.89763 0.90458 0.90907 0.87553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.70 10.71 59.84 0.64 1.34 16 2 N -0.73 -7.10 5.62 -67.08 -0.38 -7.48 16 3 C 0.55 6.51 6.37 -10.99 -0.07 6.44 16 4 O -0.53 -7.62 15.90 5.56 0.09 -7.54 16 5 C -0.14 -1.64 1.05 -156.00 -0.16 -1.80 16 6 C 0.53 7.65 6.73 -10.99 -0.07 7.58 16 7 O -0.53 -9.38 15.74 5.56 0.09 -9.29 16 8 N -0.70 -10.43 3.53 -51.37 -0.18 -10.61 16 9 C 0.13 2.34 3.03 -65.41 -0.20 2.14 16 10 H 0.08 1.64 7.78 -51.93 -0.40 1.23 16 11 C -0.14 -2.66 6.22 -23.98 -0.15 -2.81 16 12 C 0.16 3.48 4.74 -62.54 -0.30 3.18 16 13 H 0.16 3.95 5.52 -51.93 -0.29 3.66 16 14 C -0.14 -2.67 6.41 -24.57 -0.16 -2.83 16 15 C -0.13 -2.42 6.29 -24.57 -0.15 -2.57 16 16 C 0.13 2.70 5.35 -62.79 -0.34 2.36 16 17 H 0.09 1.86 8.14 -51.93 -0.42 1.44 16 18 N -0.59 -14.57 2.98 -145.54 -0.43 -15.01 16 19 C -0.21 -5.78 10.59 -15.06 -0.16 -5.94 16 20 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 21 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 22 N -0.92 -26.02 10.47 55.49 0.58 -25.43 16 23 Si 0.92 21.89 29.55 -169.99 -5.02 16.86 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 26 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 27 C -0.11 -1.14 7.04 -25.92 -0.18 -1.32 16 28 C -0.14 -1.29 7.81 -25.91 -0.20 -1.49 16 29 C -0.10 -1.02 6.95 -25.91 -0.18 -1.20 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.41 3.53 8.79 -40.82 -0.36 3.17 16 34 H 0.40 5.43 7.94 -40.82 -0.32 5.11 16 35 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.05 0.87 7.36 -51.93 -0.38 0.49 16 37 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.04 0.76 7.84 -51.93 -0.41 0.36 16 39 H 0.05 0.82 6.48 -51.93 -0.34 0.49 16 40 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 42 H 0.09 1.01 8.09 -51.93 -0.42 0.59 16 43 H 0.09 1.01 7.37 -51.93 -0.38 0.63 16 44 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 47 H 0.11 1.15 7.52 -51.93 -0.39 0.76 16 LS Contribution 372.08 15.07 5.61 5.61 Total: -1.00 -31.22 372.08 -8.90 -40.12 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: -7.46 Total: 10.10 kcal Atomic # 6 Polarization: 4.45 SS G_CDS: -1.78 Total: 2.67 kcal Atomic # 7 Polarization: -58.12 SS G_CDS: -0.41 Total: -58.53 kcal Atomic # 8 Polarization: -17.00 SS G_CDS: 0.18 Total: -16.83 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.22 -8.90 -40.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110012537.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.651 kcal (2) G-P(sol) polarization free energy of solvation -31.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds