Wall clock time and date at job start Fri Apr 10 2020 18:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34774 * 120.00032 * 2 1 4 4 O 1.21281 * 119.99903 * 5.04048 * 3 2 1 5 5 C 1.50702 * 120.00031 * 185.05098 * 3 2 1 6 6 C 1.50701 * 112.85231 * 56.23652 * 5 3 2 7 7 O 1.21275 * 119.99937 * 234.88660 * 6 5 3 8 8 N 1.34772 * 119.99752 * 54.89150 * 6 5 3 9 9 C 1.46498 * 120.00178 * 185.02932 * 8 6 5 10 10 H 1.09004 * 110.68538 * 37.05102 * 9 8 6 11 11 C 1.54845 * 110.63208 * 160.04097 * 9 8 6 12 12 C 1.56309 * 103.40750 * 118.35880 * 11 9 8 13 13 H 1.08994 * 115.71466 * 158.93134 * 12 11 9 14 14 C 1.55841 * 105.08351 * 288.43141 * 12 11 9 15 15 C 1.54225 * 103.56476 * 71.68539 * 14 12 11 16 16 C 1.55843 * 103.56440 * 0.02562 * 15 14 12 17 17 H 1.08996 * 116.12133 * 159.06187 * 16 15 14 18 18 N 1.50240 * 100.83557 * 33.12891 * 12 11 9 19 19 C 1.36932 * 130.84071 * 126.10383 * 18 12 11 20 20 H 1.08002 * 119.99935 * 179.65770 * 19 18 12 21 21 C 1.38813 * 120.00147 * 359.38667 * 19 18 12 22 22 N 1.31616 * 119.99711 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00067 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47224 * 60.00107 * 23 21 19 25 25 H 1.48508 * 109.46950 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47248 * 299.99954 * 23 21 19 27 27 C 1.53779 * 113.69182 * 187.51051 * 5 3 2 28 28 C 1.53784 * 87.08417 * 89.12170 * 27 5 3 29 29 C 1.53783 * 113.61207 * 285.04356 * 5 3 2 30 30 H 1.09002 * 109.47093 * 60.00904 * 1 2 3 31 31 H 1.08998 * 109.47342 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47583 * 300.00520 * 1 2 3 33 33 H 0.96996 * 119.99706 * 179.97438 * 2 1 3 34 34 H 0.97006 * 120.00234 * 5.01942 * 8 6 5 35 35 H 1.09000 * 110.63189 * 236.98222 * 11 9 8 36 36 H 1.09000 * 110.62833 * 359.84168 * 11 9 8 37 37 H 1.09002 * 110.62725 * 190.09086 * 14 12 11 38 38 H 1.09001 * 110.62513 * 312.94885 * 14 12 11 39 39 H 1.09000 * 110.64251 * 241.43475 * 15 14 12 40 40 H 1.09005 * 110.49391 * 118.49524 * 15 14 12 41 41 H 0.97005 * 120.00127 * 180.02562 * 22 21 19 42 42 H 1.08997 * 113.61580 * 203.67254 * 27 5 3 43 43 H 1.09007 * 113.61056 * 334.57523 * 27 5 3 44 44 H 1.08997 * 113.61539 * 270.88860 * 28 27 5 45 45 H 1.08993 * 113.61124 * 139.97752 * 28 27 5 46 46 H 1.09004 * 113.61489 * 25.34693 * 29 5 3 47 47 H 1.08997 * 113.61648 * 156.25200 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5359 2.2155 0.0923 5 6 3.6415 1.1697 -0.1149 6 6 4.1357 0.4505 -1.3435 7 8 4.9399 -0.4509 -1.2361 8 7 3.6840 0.8090 -2.5616 9 6 4.0783 0.0402 -3.7446 10 1 4.1345 -1.0232 -3.5117 11 6 3.0927 0.2914 -4.9122 12 6 3.9959 0.9262 -6.0187 13 1 3.6127 0.8608 -7.0370 14 6 4.3263 2.3583 -5.5004 15 6 5.3061 2.1046 -4.3367 16 6 5.4405 0.5524 -4.3038 17 1 6.3294 0.1580 -3.8114 18 7 5.2965 0.2196 -5.7614 19 6 6.1052 -0.5009 -6.5993 20 1 7.0197 -0.9365 -6.2246 21 6 5.7469 -0.6762 -7.9289 22 7 4.6295 -0.1503 -8.3840 23 14 6.8504 -1.6584 -9.0719 24 1 6.9934 -3.0426 -8.5535 25 1 6.2482 -1.6972 -10.4288 26 1 8.1873 -1.0157 -9.1425 27 6 4.2740 2.5574 0.0828 28 6 4.3361 2.2285 1.5838 29 6 4.3588 0.7455 1.1775 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.9499 -0.8400 0.0004 34 1 3.0976 1.5761 -2.6551 35 1 2.6599 -0.6472 -5.2582 36 1 2.3088 0.9860 -4.6102 37 1 4.8060 2.9482 -6.2815 38 1 3.4239 2.8556 -5.1448 39 1 4.8924 2.4746 -3.3985 40 1 6.2707 2.5690 -4.5418 41 1 4.3788 -0.2731 -9.3130 42 1 5.2542 2.6608 -0.3825 43 1 3.6018 3.3816 -0.1561 44 1 3.4393 2.5175 2.1316 45 1 5.2544 2.5631 2.0663 46 1 3.7551 0.1069 1.8225 47 1 5.3622 0.3535 1.0115 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001110012537.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:25 Heat of formation + Delta-G solvation = -20.949234 kcal Electronic energy + Delta-G solvation = -28924.284754 eV Core-core repulsion = 25108.293307 eV Total energy + Delta-G solvation = -3815.991447 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.36163 -41.06832 -39.64132 -38.01932 -35.67994 -35.49589 -34.22813 -31.07818 -30.86648 -29.89311 -28.76916 -27.02486 -26.47257 -25.99651 -23.11551 -22.66327 -22.25120 -21.34626 -20.38835 -20.17632 -19.30046 -18.68146 -17.31134 -17.14838 -17.06269 -16.79397 -16.46897 -16.07180 -15.94131 -15.79354 -15.32520 -15.18480 -14.42460 -14.12736 -14.00609 -13.85204 -13.52353 -13.47200 -13.27176 -13.14945 -12.95706 -12.87972 -12.79199 -12.61678 -12.45239 -12.38871 -12.02339 -11.97686 -11.90621 -11.60151 -11.44126 -11.20197 -11.07142 -11.03251 -10.79734 -10.65040 -10.20195 -10.03881 -8.87051 -7.79573 -5.19129 1.30494 1.46726 1.47817 1.49956 1.55125 2.07561 2.12354 2.50486 3.33624 3.38737 3.41390 3.49515 3.61709 3.70886 3.79577 3.95147 4.08471 4.12842 4.34801 4.40451 4.43728 4.48362 4.57166 4.62146 4.67752 4.68914 4.76111 4.82133 4.92919 4.94124 4.96257 5.01237 5.04651 5.06138 5.12060 5.18831 5.30386 5.32786 5.38702 5.43329 5.52722 5.69816 5.87827 6.25571 6.33615 6.50293 7.02638 7.04801 7.16676 7.68935 8.54792 9.27243 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.021081 B = 0.003517 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.887992 B = 7960.028858 C = 8248.745932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.723 5.723 3 C 0.546 3.454 4 O -0.553 6.553 5 C -0.137 4.137 6 C 0.533 3.467 7 O -0.562 6.562 8 N -0.696 5.696 9 C 0.149 3.851 10 H 0.060 0.940 11 C -0.126 4.126 12 C 0.140 3.860 13 H 0.122 0.878 14 C -0.127 4.127 15 C -0.117 4.117 16 C 0.122 3.878 17 H 0.070 0.930 18 N -0.616 5.616 19 C -0.226 4.226 20 H 0.073 0.927 21 C -0.061 4.061 22 N -0.944 5.944 23 Si 0.976 3.024 24 H -0.282 1.282 25 H -0.291 1.291 26 H -0.282 1.282 27 C -0.109 4.109 28 C -0.129 4.129 29 C -0.100 4.100 30 H 0.054 0.946 31 H 0.104 0.896 32 H 0.061 0.939 33 H 0.411 0.589 34 H 0.407 0.593 35 H 0.050 0.950 36 H 0.087 0.913 37 H 0.035 0.965 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.043 0.957 41 H 0.249 0.751 42 H 0.096 0.904 43 H 0.087 0.913 44 H 0.085 0.915 45 H 0.094 0.906 46 H 0.086 0.914 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.532 3.809 19.930 21.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.373 5.373 3 C 0.331 3.669 4 O -0.431 6.431 5 C -0.144 4.144 6 C 0.319 3.681 7 O -0.440 6.440 8 N -0.346 5.346 9 C 0.042 3.958 10 H 0.078 0.922 11 C -0.166 4.166 12 C 0.034 3.966 13 H 0.139 0.861 14 C -0.166 4.166 15 C -0.156 4.156 16 C 0.013 3.987 17 H 0.089 0.911 18 N -0.338 5.338 19 C -0.355 4.355 20 H 0.090 0.910 21 C -0.254 4.254 22 N -0.593 5.593 23 Si 0.805 3.195 24 H -0.208 1.208 25 H -0.217 1.217 26 H -0.209 1.209 27 C -0.147 4.147 28 C -0.166 4.166 29 C -0.138 4.138 30 H 0.073 0.927 31 H 0.123 0.877 32 H 0.080 0.920 33 H 0.246 0.754 34 H 0.243 0.757 35 H 0.069 0.931 36 H 0.105 0.895 37 H 0.054 0.946 38 H 0.099 0.901 39 H 0.100 0.900 40 H 0.062 0.938 41 H 0.059 0.941 42 H 0.114 0.886 43 H 0.106 0.894 44 H 0.103 0.897 45 H 0.113 0.887 46 H 0.104 0.896 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -7.367 3.744 19.749 21.408 hybrid contribution 0.630 -0.803 -1.202 1.577 sum -6.736 2.941 18.547 19.950 Atomic orbital electron populations 1.21735 0.77831 1.04305 1.02055 1.45790 1.08881 1.08408 1.74221 1.19563 0.87777 0.83983 0.75625 1.90700 1.69894 1.32256 1.50299 1.22434 0.93587 1.02321 0.96050 1.20220 0.80863 0.82762 0.84262 1.90711 1.34524 1.32028 1.86779 1.46081 1.50208 1.32566 1.05784 1.22132 0.95576 0.94304 0.83799 0.92156 1.23185 0.96974 1.00889 0.95542 1.23761 0.85073 0.89157 0.98618 0.86128 1.22828 0.98728 0.98051 0.97036 1.22696 0.98759 0.95784 0.98351 1.23315 0.95455 0.94749 0.85133 0.91135 1.46703 1.23235 1.59257 1.04612 1.19274 1.01361 1.24126 0.90770 0.90964 1.25400 0.99246 1.02685 0.98078 1.69657 1.24670 1.50338 1.14675 0.85190 0.77985 0.78491 0.77879 1.20831 1.21721 1.20882 1.22854 1.01052 0.92667 0.98082 1.22817 1.03742 0.94698 0.95387 1.22845 1.01286 0.98238 0.91397 0.92727 0.87693 0.92020 0.75421 0.75699 0.93136 0.89479 0.94565 0.90124 0.89977 0.93825 0.94135 0.88553 0.89425 0.89677 0.88716 0.89567 0.88345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.13 10.71 127.77 1.37 2.50 16 2 N -0.72 -12.37 5.62 -484.53 -2.72 -15.10 16 3 C 0.55 11.77 6.37 87.66 0.56 12.32 16 4 O -0.55 -14.76 15.90 -3.03 -0.05 -14.81 16 5 C -0.14 -2.89 1.05 -53.15 -0.06 -2.95 16 6 C 0.53 14.52 6.73 87.66 0.59 15.11 16 7 O -0.56 -19.30 15.74 -3.01 -0.05 -19.35 16 8 N -0.70 -19.16 3.53 -434.83 -1.53 -20.69 16 9 C 0.15 5.32 3.03 46.63 0.14 5.46 16 10 H 0.06 2.44 7.78 -2.39 -0.02 2.42 16 11 C -0.13 -4.64 6.22 32.38 0.20 -4.44 16 12 C 0.14 6.29 4.74 46.39 0.22 6.51 16 13 H 0.12 6.36 5.52 -2.39 -0.01 6.34 16 14 C -0.13 -4.78 6.41 31.99 0.21 -4.57 16 15 C -0.12 -4.15 6.29 31.99 0.20 -3.95 16 16 C 0.12 5.04 5.35 46.26 0.25 5.29 16 17 H 0.07 3.11 8.14 -2.39 -0.02 3.09 16 18 N -0.62 -31.02 2.98 -614.36 -1.83 -32.85 16 19 C -0.23 -12.73 10.59 84.03 0.89 -11.84 16 20 H 0.07 4.00 7.83 -2.91 -0.02 3.98 16 21 C -0.06 -3.43 5.50 84.86 0.47 -2.97 16 22 N -0.94 -54.58 10.47 21.65 0.23 -54.35 16 23 Si 0.98 45.83 29.55 68.60 2.03 47.85 16 24 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 25 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 26 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 27 C -0.11 -2.05 7.04 31.12 0.22 -1.83 16 28 C -0.13 -2.00 7.81 31.12 0.24 -1.76 16 29 C -0.10 -1.76 6.95 31.12 0.22 -1.55 16 30 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.41 6.20 8.79 -92.71 -0.81 5.38 16 34 H 0.41 9.84 7.94 -92.70 -0.74 9.11 16 35 H 0.05 2.00 8.14 -2.39 -0.02 1.99 16 36 H 0.09 2.59 7.36 -2.39 -0.02 2.57 16 37 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.08 2.45 7.84 -2.39 -0.02 2.43 16 39 H 0.08 2.40 6.48 -2.39 -0.02 2.39 16 40 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 41 H 0.25 14.06 8.31 -92.70 -0.77 13.29 16 42 H 0.10 1.80 8.09 -2.39 -0.02 1.78 16 43 H 0.09 1.74 7.37 -2.38 -0.02 1.72 16 44 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 45 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 46 H 0.09 1.29 8.09 -2.39 -0.02 1.27 16 47 H 0.10 1.95 7.52 -2.39 -0.02 1.94 16 Total: -1.00 -68.91 372.08 1.22 -67.68 By element: Atomic # 1 Polarization: 30.82 SS G_CDS: -0.56 Total: 30.26 kcal Atomic # 6 Polarization: 5.65 SS G_CDS: 5.71 Total: 11.36 kcal Atomic # 7 Polarization: -117.13 SS G_CDS: -5.86 Total: -123.00 kcal Atomic # 8 Polarization: -34.07 SS G_CDS: -0.10 Total: -34.16 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.85 kcal Total: -68.91 1.22 -67.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110012537.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.735 kcal (2) G-P(sol) polarization free energy of solvation -68.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds