Wall clock time and date at job start Fri Apr 10 2020 18:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.33245 * 125.52581 * 2 1 4 4 C 1.30827 * 109.83307 * 179.97438 * 3 2 1 5 5 C 1.50702 * 125.96262 * 179.97438 * 4 3 2 6 6 N 1.34433 * 108.07662 * 0.02562 * 4 3 2 7 7 C 1.46492 * 126.82296 * 179.97438 * 6 4 3 8 8 C 1.52999 * 109.47388 * 89.99934 * 7 6 4 9 9 C 1.52999 * 109.47232 * 179.97438 * 8 7 6 10 10 C 1.50704 * 109.47080 * 179.97438 * 9 8 7 11 11 O 1.21286 * 119.99950 * 359.97438 * 10 9 8 12 12 N 1.34774 * 120.00284 * 179.97438 * 10 9 8 13 13 C 1.46957 * 120.59483 * 179.97438 * 12 10 9 14 14 C 1.53378 * 108.63600 * 235.24927 * 13 12 10 15 15 N 1.46960 * 108.63441 * 310.57541 * 14 13 12 16 16 C 1.36929 * 120.59772 * 235.19929 * 15 14 13 17 17 H 1.08001 * 120.00154 * 26.80307 * 16 15 14 18 18 C 1.38818 * 120.00276 * 206.52209 * 16 15 14 19 19 N 1.31616 * 120.00013 * 217.35632 * 18 16 15 20 20 Si 1.86795 * 119.99797 * 37.35637 * 18 16 15 21 21 H 1.48497 * 109.47307 * 95.28345 * 20 18 16 22 22 H 1.48499 * 109.46918 * 215.28171 * 20 18 16 23 23 H 1.48500 * 109.47058 * 335.28197 * 20 18 16 24 24 C 1.46972 * 118.81093 * 55.48291 * 15 14 13 25 25 C 1.46973 * 120.59110 * 0.02618 * 12 10 9 26 26 N 1.30716 * 125.53303 * 180.28076 * 2 1 3 27 27 H 1.09000 * 109.47342 * 90.02789 * 1 2 3 28 28 H 1.09002 * 109.46937 * 210.02446 * 1 2 3 29 29 H 1.08999 * 109.47307 * 330.02220 * 1 2 3 30 30 H 1.09001 * 109.46970 * 270.04497 * 5 4 3 31 31 H 1.08994 * 109.46931 * 30.04716 * 5 4 3 32 32 H 1.08998 * 109.46880 * 150.04572 * 5 4 3 33 33 H 1.08997 * 109.47698 * 329.99704 * 7 6 4 34 34 H 1.09010 * 109.47245 * 209.99800 * 7 6 4 35 35 H 1.09005 * 109.47388 * 59.99593 * 8 7 6 36 36 H 1.08999 * 109.47114 * 299.99736 * 8 7 6 37 37 H 1.08997 * 109.46961 * 60.00215 * 9 8 7 38 38 H 1.08994 * 109.47261 * 299.99590 * 9 8 7 39 39 H 1.09004 * 109.60829 * 115.50719 * 13 12 10 40 40 H 1.08995 * 109.61517 * 354.99897 * 13 12 10 41 41 H 1.09001 * 109.60979 * 190.83526 * 14 13 12 42 42 H 1.08998 * 109.74677 * 70.41012 * 14 13 12 43 43 H 0.97000 * 120.00046 * 180.02562 * 19 18 16 44 44 H 1.09002 * 109.61298 * 64.25873 * 24 15 14 45 45 H 1.08995 * 109.61261 * 184.77395 * 24 15 14 46 46 H 1.08994 * 109.60538 * 244.49313 * 25 12 10 47 47 H 1.09004 * 109.60748 * 4.83428 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2812 1.0844 0.0000 4 6 3.5407 0.7306 0.0006 5 6 4.7227 1.6655 0.0002 6 7 3.5966 -0.6126 0.0003 7 6 4.8048 -1.4411 0.0003 8 6 5.2254 -1.7297 1.4427 9 6 6.4869 -2.5955 1.4426 10 6 6.9015 -2.8793 2.8634 11 8 6.2522 -2.4326 3.7853 12 7 7.9938 -3.6295 3.1096 13 6 8.4102 -3.9138 4.4900 14 6 9.8665 -3.4653 4.6648 15 7 10.6627 -4.0132 3.5578 16 6 11.7730 -4.7745 3.8078 17 1 11.8472 -5.3355 4.7278 18 6 12.8008 -4.8300 2.8764 19 7 13.4453 -5.9596 2.6741 20 14 13.2691 -3.3014 1.9103 21 1 14.4019 -2.6175 2.5843 22 1 13.6729 -3.6896 0.5350 23 1 12.1049 -2.3820 1.8435 24 6 10.2495 -3.7240 2.1773 25 6 8.7904 -4.1768 2.0024 26 7 2.2666 -1.0637 -0.0052 27 1 -0.3634 -0.0005 -1.0276 28 1 -0.3633 -0.8898 0.5142 29 1 -0.3634 0.8902 0.5135 30 1 5.0073 1.8908 -1.0276 31 1 4.4556 2.5889 0.5140 32 1 5.5598 1.1929 0.5138 33 1 5.6078 -0.9126 -0.5135 34 1 4.6011 -2.3806 -0.5137 35 1 4.4224 -2.2583 1.9565 36 1 5.4291 -0.7903 1.9567 37 1 7.2900 -2.0673 0.9288 38 1 6.2828 -3.5349 0.9288 39 1 8.3313 -4.9837 4.6828 40 1 7.7730 -3.3665 5.1845 41 1 10.2529 -3.8388 5.6132 42 1 9.9208 -2.3768 4.6510 43 1 14.1637 -5.9983 2.0235 44 1 10.3280 -2.6534 1.9885 45 1 10.8889 -4.2684 1.4824 46 1 8.7385 -5.2654 2.0178 47 1 8.4022 -3.8054 1.0540 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001113522562.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:31 Heat of formation + Delta-G solvation = 78.377426 kcal Electronic energy + Delta-G solvation = -26985.655360 eV Core-core repulsion = 23206.263791 eV Total energy + Delta-G solvation = -3779.391569 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.35421 -39.92843 -37.26007 -35.96846 -34.03359 -33.39589 -32.54675 -31.65267 -30.77604 -29.81276 -28.65130 -27.38670 -26.16436 -23.76108 -23.30035 -22.50922 -20.94428 -20.72215 -20.61115 -18.77869 -17.51310 -16.85328 -16.40628 -16.18242 -15.91502 -15.60832 -14.96106 -14.74354 -14.55592 -14.36610 -13.97355 -13.79491 -13.70211 -13.60350 -13.24880 -13.12180 -13.02196 -12.80101 -12.59673 -12.50463 -12.28090 -12.22684 -12.06737 -11.85654 -11.74938 -11.14338 -11.08061 -10.88468 -10.55251 -10.45281 -10.26636 -10.19055 -9.92988 -9.61855 -9.57840 -9.51355 -8.81151 -8.30861 -7.10946 -6.17932 -3.36983 1.35830 2.01568 2.65187 2.76348 3.19818 3.28283 3.40687 3.45647 3.75891 4.09121 4.33223 4.39693 4.43701 4.59771 4.66914 4.75792 4.90225 4.96415 4.98992 5.02363 5.04846 5.16108 5.27168 5.28486 5.40041 5.48550 5.50188 5.53181 5.53522 5.70508 5.72517 5.82078 5.92106 5.98757 6.03430 6.11063 6.17415 6.26191 6.42349 6.49044 6.58298 6.66105 6.83337 7.66601 7.79338 7.90622 8.16703 8.33488 8.79726 9.58191 9.97907 10.96351 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.023488 B = 0.002425 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.817114 B =11542.079775 C =12077.424831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.217 3.783 3 N -0.546 5.546 4 C 0.279 3.721 5 C -0.080 4.080 6 N -0.374 5.374 7 C 0.126 3.874 8 C -0.118 4.118 9 C -0.137 4.137 10 C 0.510 3.490 11 O -0.556 6.556 12 N -0.598 5.598 13 C 0.095 3.905 14 C 0.132 3.868 15 N -0.599 5.599 16 C -0.277 4.277 17 H 0.083 0.917 18 C 0.039 3.961 19 N -0.877 5.877 20 Si 0.835 3.165 21 H -0.292 1.292 22 H -0.293 1.293 23 H -0.258 1.258 24 C 0.131 3.869 25 C 0.085 3.915 26 N -0.318 5.318 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.097 0.903 32 H 0.084 0.916 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.067 0.933 40 H 0.084 0.916 41 H 0.075 0.925 42 H 0.026 0.974 43 H 0.264 0.736 44 H 0.032 0.968 45 H 0.078 0.922 46 H 0.074 0.926 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.461 10.718 -8.203 22.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.065 4.065 3 N -0.275 5.275 4 C 0.003 3.997 5 C -0.139 4.139 6 N -0.164 5.164 7 C 0.004 3.996 8 C -0.157 4.157 9 C -0.178 4.178 10 C 0.298 3.702 11 O -0.435 6.435 12 N -0.330 5.330 13 C -0.028 4.028 14 C 0.006 3.994 15 N -0.322 5.322 16 C -0.404 4.404 17 H 0.100 0.900 18 C -0.162 4.162 19 N -0.516 5.516 20 Si 0.662 3.338 21 H -0.219 1.219 22 H -0.220 1.220 23 H -0.183 1.183 24 C 0.004 3.996 25 C -0.040 4.040 26 N -0.147 5.147 27 H 0.100 0.900 28 H 0.099 0.901 29 H 0.103 0.897 30 H 0.110 0.890 31 H 0.116 0.884 32 H 0.103 0.897 33 H 0.118 0.882 34 H 0.119 0.881 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.115 0.885 38 H 0.115 0.885 39 H 0.085 0.915 40 H 0.103 0.897 41 H 0.093 0.907 42 H 0.044 0.956 43 H 0.073 0.927 44 H 0.050 0.950 45 H 0.096 0.904 46 H 0.092 0.908 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -18.954 10.349 -7.787 22.956 hybrid contribution 0.999 0.684 -0.642 1.371 sum -17.955 11.033 -8.429 22.697 Atomic orbital electron populations 1.20069 0.83996 1.03991 1.03555 1.24270 0.98242 0.85791 0.98188 1.70347 0.99875 1.30991 1.26294 1.24358 0.95289 0.83931 0.96075 1.20426 0.91438 0.97594 1.04434 1.50319 1.05915 1.05499 1.54703 1.21900 0.82509 0.96205 0.98987 1.21690 0.97814 1.01523 0.94631 1.21570 0.98525 1.01974 0.95698 1.20437 0.80309 0.78318 0.91098 1.90671 1.53884 1.52457 1.46470 1.48046 1.26123 1.50535 1.08337 1.22207 0.97623 1.00902 0.82099 1.21347 0.89283 0.96038 0.92764 1.44294 1.28750 1.59826 0.99375 1.18766 0.94491 1.19979 1.07125 0.89974 1.25219 0.97205 0.96495 0.97320 1.70121 1.24204 1.23516 1.33774 0.87600 0.79810 0.87568 0.78840 1.21949 1.22014 1.18299 1.21778 0.91688 0.97996 0.88112 1.22612 0.93946 0.99411 0.88032 1.78021 0.86768 1.22620 1.27274 0.90003 0.90057 0.89657 0.89048 0.88381 0.89675 0.88198 0.88114 0.90087 0.90483 0.88456 0.88475 0.91473 0.89725 0.90706 0.95637 0.92655 0.94981 0.90362 0.90798 0.90690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.45 10.51 36.00 0.38 -0.07 16 2 C 0.22 2.65 8.14 -156.85 -1.28 1.37 16 3 N -0.55 -6.92 11.19 -8.16 -0.09 -7.01 16 4 C 0.28 3.01 7.98 -155.69 -1.24 1.77 16 5 C -0.08 -0.51 10.01 36.01 0.36 -0.15 16 6 N -0.37 -4.16 3.64 -58.34 -0.21 -4.37 16 7 C 0.13 1.01 6.13 -4.05 -0.02 0.98 16 8 C -0.12 -1.17 4.83 -26.73 -0.13 -1.30 16 9 C -0.14 -1.35 4.04 -27.88 -0.11 -1.46 16 10 C 0.51 7.58 7.70 -10.98 -0.08 7.50 16 11 O -0.56 -10.09 15.39 5.55 0.09 -10.01 16 12 N -0.60 -9.45 2.95 -172.23 -0.51 -9.95 16 13 C 0.10 1.60 6.59 -3.60 -0.02 1.58 16 14 C 0.13 2.49 6.67 -3.60 -0.02 2.47 16 15 N -0.60 -13.19 2.71 -171.78 -0.47 -13.66 16 16 C -0.28 -7.21 9.84 -15.06 -0.15 -7.36 16 17 H 0.08 2.30 8.05 -52.49 -0.42 1.88 16 18 C 0.04 1.06 4.80 -17.43 -0.08 0.97 16 19 N -0.88 -25.12 13.97 55.49 0.78 -24.35 16 20 Si 0.84 19.84 26.46 -169.99 -4.50 15.34 16 21 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.26 -5.76 4.99 56.52 0.28 -5.47 16 24 C 0.13 2.52 4.58 -3.38 -0.02 2.51 16 25 C 0.08 1.27 6.52 -3.38 -0.02 1.25 16 26 N -0.32 -4.17 12.70 32.42 0.41 -3.76 16 27 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.08 0.44 7.76 -51.93 -0.40 0.04 16 33 H 0.10 0.51 7.72 -51.93 -0.40 0.11 16 34 H 0.10 0.73 8.14 -51.92 -0.42 0.31 16 35 H 0.08 1.01 8.10 -51.93 -0.42 0.59 16 36 H 0.08 0.85 8.10 -51.93 -0.42 0.42 16 37 H 0.10 0.77 7.72 -51.93 -0.40 0.37 16 38 H 0.10 0.78 7.91 -51.93 -0.41 0.37 16 39 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.08 1.40 6.99 -51.93 -0.36 1.04 16 41 H 0.07 1.38 7.93 -51.93 -0.41 0.96 16 42 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 44 H 0.03 0.62 6.78 -51.93 -0.35 0.27 16 45 H 0.08 1.62 5.59 -51.93 -0.29 1.33 16 46 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 47 H 0.07 0.84 5.91 -51.93 -0.31 0.53 16 LS Contribution 376.70 15.07 5.68 5.68 Total: -1.00 -34.82 376.70 -8.94 -43.76 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -7.66 Total: -1.73 kcal Atomic # 6 Polarization: 12.50 SS G_CDS: -2.45 Total: 10.05 kcal Atomic # 7 Polarization: -63.01 SS G_CDS: -0.09 Total: -63.10 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.09 Total: -10.01 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -4.50 Total: 15.34 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.82 -8.94 -43.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113522562.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.140 kcal (2) G-P(sol) polarization free energy of solvation -34.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds