Wall clock time and date at job start Fri Apr 10 2020 18:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.33245 * 125.52581 * 2 1 4 4 C 1.30827 * 109.83307 * 179.97438 * 3 2 1 5 5 C 1.50702 * 125.96262 * 179.97438 * 4 3 2 6 6 N 1.34433 * 108.07662 * 0.02562 * 4 3 2 7 7 C 1.46492 * 126.82296 * 179.97438 * 6 4 3 8 8 C 1.52999 * 109.47388 * 89.99934 * 7 6 4 9 9 C 1.52999 * 109.47232 * 179.97438 * 8 7 6 10 10 C 1.50704 * 109.47080 * 179.97438 * 9 8 7 11 11 O 1.21286 * 119.99950 * 359.97438 * 10 9 8 12 12 N 1.34774 * 120.00284 * 179.97438 * 10 9 8 13 13 C 1.46957 * 120.59483 * 179.97438 * 12 10 9 14 14 C 1.53378 * 108.63600 * 235.24927 * 13 12 10 15 15 N 1.46960 * 108.63441 * 310.57541 * 14 13 12 16 16 C 1.36929 * 120.59772 * 235.19929 * 15 14 13 17 17 H 1.08001 * 120.00154 * 26.80307 * 16 15 14 18 18 C 1.38818 * 120.00276 * 206.52209 * 16 15 14 19 19 N 1.31616 * 120.00013 * 217.35632 * 18 16 15 20 20 Si 1.86795 * 119.99797 * 37.35637 * 18 16 15 21 21 H 1.48497 * 109.47307 * 95.28345 * 20 18 16 22 22 H 1.48499 * 109.46918 * 215.28171 * 20 18 16 23 23 H 1.48500 * 109.47058 * 335.28197 * 20 18 16 24 24 C 1.46972 * 118.81093 * 55.48291 * 15 14 13 25 25 C 1.46973 * 120.59110 * 0.02618 * 12 10 9 26 26 N 1.30716 * 125.53303 * 180.28076 * 2 1 3 27 27 H 1.09000 * 109.47342 * 90.02789 * 1 2 3 28 28 H 1.09002 * 109.46937 * 210.02446 * 1 2 3 29 29 H 1.08999 * 109.47307 * 330.02220 * 1 2 3 30 30 H 1.09001 * 109.46970 * 270.04497 * 5 4 3 31 31 H 1.08994 * 109.46931 * 30.04716 * 5 4 3 32 32 H 1.08998 * 109.46880 * 150.04572 * 5 4 3 33 33 H 1.08997 * 109.47698 * 329.99704 * 7 6 4 34 34 H 1.09010 * 109.47245 * 209.99800 * 7 6 4 35 35 H 1.09005 * 109.47388 * 59.99593 * 8 7 6 36 36 H 1.08999 * 109.47114 * 299.99736 * 8 7 6 37 37 H 1.08997 * 109.46961 * 60.00215 * 9 8 7 38 38 H 1.08994 * 109.47261 * 299.99590 * 9 8 7 39 39 H 1.09004 * 109.60829 * 115.50719 * 13 12 10 40 40 H 1.08995 * 109.61517 * 354.99897 * 13 12 10 41 41 H 1.09001 * 109.60979 * 190.83526 * 14 13 12 42 42 H 1.08998 * 109.74677 * 70.41012 * 14 13 12 43 43 H 0.97000 * 120.00046 * 180.02562 * 19 18 16 44 44 H 1.09002 * 109.61298 * 64.25873 * 24 15 14 45 45 H 1.08995 * 109.61261 * 184.77395 * 24 15 14 46 46 H 1.08994 * 109.60538 * 244.49313 * 25 12 10 47 47 H 1.09004 * 109.60748 * 4.83428 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2812 1.0844 0.0000 4 6 3.5407 0.7306 0.0006 5 6 4.7227 1.6655 0.0002 6 7 3.5966 -0.6126 0.0003 7 6 4.8048 -1.4411 0.0003 8 6 5.2254 -1.7297 1.4427 9 6 6.4869 -2.5955 1.4426 10 6 6.9015 -2.8793 2.8634 11 8 6.2522 -2.4326 3.7853 12 7 7.9938 -3.6295 3.1096 13 6 8.4102 -3.9138 4.4900 14 6 9.8665 -3.4653 4.6648 15 7 10.6627 -4.0132 3.5578 16 6 11.7730 -4.7745 3.8078 17 1 11.8472 -5.3355 4.7278 18 6 12.8008 -4.8300 2.8764 19 7 13.4453 -5.9596 2.6741 20 14 13.2691 -3.3014 1.9103 21 1 14.4019 -2.6175 2.5843 22 1 13.6729 -3.6896 0.5350 23 1 12.1049 -2.3820 1.8435 24 6 10.2495 -3.7240 2.1773 25 6 8.7904 -4.1768 2.0024 26 7 2.2666 -1.0637 -0.0052 27 1 -0.3634 -0.0005 -1.0276 28 1 -0.3633 -0.8898 0.5142 29 1 -0.3634 0.8902 0.5135 30 1 5.0073 1.8908 -1.0276 31 1 4.4556 2.5889 0.5140 32 1 5.5598 1.1929 0.5138 33 1 5.6078 -0.9126 -0.5135 34 1 4.6011 -2.3806 -0.5137 35 1 4.4224 -2.2583 1.9565 36 1 5.4291 -0.7903 1.9567 37 1 7.2900 -2.0673 0.9288 38 1 6.2828 -3.5349 0.9288 39 1 8.3313 -4.9837 4.6828 40 1 7.7730 -3.3665 5.1845 41 1 10.2529 -3.8388 5.6132 42 1 9.9208 -2.3768 4.6510 43 1 14.1637 -5.9983 2.0235 44 1 10.3280 -2.6534 1.9885 45 1 10.8889 -4.2684 1.4824 46 1 8.7385 -5.2654 2.0178 47 1 8.4022 -3.8054 1.0540 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001113522562.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:30 Heat of formation + Delta-G solvation = 55.852606 kcal Electronic energy + Delta-G solvation = -26986.632110 eV Core-core repulsion = 23206.263791 eV Total energy + Delta-G solvation = -3780.368319 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.12851 -41.14737 -38.67831 -36.77138 -35.61786 -34.17460 -33.61423 -33.20810 -32.15528 -30.48544 -29.48589 -28.74037 -27.10893 -25.24547 -24.73536 -23.52747 -22.00549 -21.72029 -21.41650 -20.12354 -18.85435 -17.94876 -17.68945 -17.10231 -16.90366 -16.77949 -16.54951 -15.99563 -15.75518 -15.40497 -15.24741 -14.78000 -14.75953 -14.51349 -14.31368 -14.15832 -14.09566 -13.89214 -13.64735 -13.49542 -13.33829 -13.10303 -12.95213 -12.81290 -12.67775 -12.58799 -12.43107 -12.21244 -12.08030 -11.86983 -11.84990 -11.39224 -11.03468 -10.85286 -10.71269 -10.65489 -10.29583 -9.85646 -8.87211 -8.22300 -5.38450 0.57920 1.34079 1.37435 1.50642 1.56016 1.63861 1.84799 2.03603 2.45911 2.94708 3.13088 3.39449 3.43449 3.45932 3.72232 3.90952 3.96313 4.05988 4.13797 4.24142 4.34585 4.36677 4.38745 4.46665 4.52005 4.57591 4.59923 4.65095 4.71641 4.73070 4.79365 4.83779 4.90041 4.90435 4.96200 5.01868 5.02153 5.17608 5.20133 5.36678 5.50661 5.51715 5.86022 5.91124 6.11249 6.49403 6.91031 7.10839 7.17081 7.63203 8.05168 8.95645 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.023488 B = 0.002425 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.817114 B =11542.079775 C =12077.424831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.203 3.797 3 N -0.578 5.578 4 C 0.275 3.725 5 C -0.078 4.078 6 N -0.380 5.380 7 C 0.125 3.875 8 C -0.106 4.106 9 C -0.128 4.128 10 C 0.507 3.493 11 O -0.594 6.594 12 N -0.604 5.604 13 C 0.104 3.896 14 C 0.133 3.867 15 N -0.613 5.613 16 C -0.268 4.268 17 H 0.046 0.954 18 C -0.013 4.013 19 N -0.927 5.927 20 Si 0.903 3.097 21 H -0.308 1.308 22 H -0.292 1.292 23 H -0.230 1.230 24 C 0.123 3.877 25 C 0.095 3.905 26 N -0.354 5.354 27 H 0.096 0.904 28 H 0.087 0.913 29 H 0.092 0.908 30 H 0.113 0.887 31 H 0.099 0.901 32 H 0.101 0.899 33 H 0.139 0.861 34 H 0.110 0.890 35 H 0.047 0.953 36 H 0.064 0.936 37 H 0.133 0.867 38 H 0.125 0.875 39 H 0.061 0.939 40 H 0.086 0.914 41 H 0.068 0.932 42 H 0.030 0.970 43 H 0.263 0.737 44 H 0.043 0.957 45 H 0.063 0.937 46 H 0.066 0.934 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.236 12.562 -10.637 25.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.079 4.079 3 N -0.308 5.308 4 C -0.001 4.001 5 C -0.137 4.137 6 N -0.170 5.170 7 C 0.004 3.996 8 C -0.145 4.145 9 C -0.168 4.168 10 C 0.297 3.703 11 O -0.475 6.475 12 N -0.336 5.336 13 C -0.021 4.021 14 C 0.008 3.992 15 N -0.337 5.337 16 C -0.397 4.397 17 H 0.063 0.937 18 C -0.211 4.211 19 N -0.570 5.570 20 Si 0.730 3.270 21 H -0.237 1.237 22 H -0.218 1.218 23 H -0.153 1.153 24 C -0.003 4.003 25 C -0.028 4.028 26 N -0.183 5.183 27 H 0.114 0.886 28 H 0.105 0.895 29 H 0.111 0.889 30 H 0.132 0.868 31 H 0.118 0.882 32 H 0.120 0.880 33 H 0.157 0.843 34 H 0.129 0.871 35 H 0.066 0.934 36 H 0.083 0.917 37 H 0.151 0.849 38 H 0.143 0.857 39 H 0.080 0.920 40 H 0.104 0.896 41 H 0.087 0.913 42 H 0.048 0.952 43 H 0.072 0.928 44 H 0.061 0.939 45 H 0.082 0.918 46 H 0.085 0.915 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -19.763 12.216 -10.240 25.390 hybrid contribution 1.196 0.089 0.237 1.223 sum -18.566 12.306 -10.003 24.417 Atomic orbital electron populations 1.20203 0.81956 1.04627 1.04676 1.24964 0.99752 0.85614 0.97553 1.70362 1.01034 1.31695 1.27711 1.25155 0.95917 0.84434 0.94551 1.20641 0.90193 0.96803 1.06093 1.50501 1.05913 1.05992 1.54639 1.22134 0.82491 0.97136 0.97792 1.21521 0.96894 1.00479 0.95635 1.21638 0.99190 1.03689 0.92311 1.21335 0.79160 0.76830 0.92928 1.90665 1.54853 1.53670 1.48347 1.48137 1.26740 1.50952 1.07760 1.21942 0.96052 1.00466 0.83603 1.21387 0.90053 0.96033 0.91768 1.44404 1.27919 1.59892 1.01514 1.18660 0.96062 1.19354 1.05598 0.93668 1.25738 0.97462 0.98583 0.99297 1.70207 1.25519 1.25455 1.35788 0.86528 0.79543 0.83829 0.77107 1.23680 1.21825 1.15345 1.21903 0.94144 0.98313 0.85945 1.22520 0.91240 0.99156 0.89913 1.77931 0.88061 1.23681 1.28649 0.88554 0.89454 0.88920 0.86824 0.88239 0.88013 0.84326 0.87126 0.93449 0.91712 0.84944 0.85743 0.92047 0.89617 0.91339 0.95158 0.92774 0.93913 0.91841 0.91545 0.85459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.85 10.51 71.23 0.75 -0.10 16 2 C 0.20 4.85 8.14 138.63 1.13 5.98 16 3 N -0.58 -14.15 11.19 -179.72 -2.01 -16.16 16 4 C 0.28 5.40 7.98 138.23 1.10 6.50 16 5 C -0.08 -0.76 10.01 71.24 0.71 -0.05 16 6 N -0.38 -7.69 3.64 -338.50 -1.23 -8.92 16 7 C 0.13 1.53 6.13 86.38 0.53 2.06 16 8 C -0.11 -1.80 4.83 30.59 0.15 -1.66 16 9 C -0.13 -1.90 4.04 29.85 0.12 -1.78 16 10 C 0.51 13.52 7.70 87.66 0.67 14.19 16 11 O -0.59 -20.73 15.39 -3.05 -0.05 -20.78 16 12 N -0.60 -17.35 2.95 -817.21 -2.41 -19.76 16 13 C 0.10 3.38 6.59 86.42 0.57 3.95 16 14 C 0.13 4.93 6.67 86.42 0.58 5.51 16 15 N -0.61 -26.38 2.71 -697.41 -1.89 -28.27 16 16 C -0.27 -14.17 9.84 84.04 0.83 -13.35 16 17 H 0.05 2.66 8.05 -2.91 -0.02 2.64 16 18 C -0.01 -0.69 4.80 84.86 0.41 -0.28 16 19 N -0.93 -54.32 13.97 21.65 0.30 -54.02 16 20 Si 0.90 40.79 26.46 68.60 1.82 42.61 16 21 H -0.31 -14.66 7.11 99.48 0.71 -13.95 16 22 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 23 H -0.23 -9.21 4.99 99.48 0.50 -8.72 16 24 C 0.12 4.34 4.58 86.55 0.40 4.74 16 25 C 0.10 2.50 6.52 86.55 0.56 3.07 16 26 N -0.35 -9.02 12.70 -51.33 -0.65 -9.67 16 27 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.10 0.65 7.76 -2.39 -0.02 0.63 16 33 H 0.14 0.64 7.72 -2.39 -0.02 0.62 16 34 H 0.11 1.17 8.14 -2.38 -0.02 1.15 16 35 H 0.05 1.13 8.10 -2.38 -0.02 1.11 16 36 H 0.06 1.26 8.10 -2.39 -0.02 1.24 16 37 H 0.13 1.15 7.72 -2.39 -0.02 1.14 16 38 H 0.12 1.27 7.91 -2.39 -0.02 1.25 16 39 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.09 2.78 6.99 -2.39 -0.02 2.77 16 41 H 0.07 2.56 7.93 -2.39 -0.02 2.54 16 42 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 44 H 0.04 1.44 6.78 -2.39 -0.02 1.43 16 45 H 0.06 2.46 5.59 -2.39 -0.01 2.44 16 46 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 47 H 0.13 2.03 5.91 -2.39 -0.01 2.01 16 Total: -1.00 -79.44 376.70 3.14 -76.30 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: 0.75 Total: 9.89 kcal Atomic # 6 Polarization: 20.28 SS G_CDS: 8.51 Total: 28.79 kcal Atomic # 7 Polarization: -128.91 SS G_CDS: -7.89 Total: -136.80 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: -0.05 Total: -20.78 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 1.82 Total: 42.61 kcal Total: -79.44 3.14 -76.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113522562.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.151 kcal (2) G-P(sol) polarization free energy of solvation -79.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds