Wall clock time and date at job start Fri Apr 10 2020 18:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09007 * 109.58300 * 2 1 4 4 C 1.53191 * 109.58944 * 239.71436 * 2 1 3 5 5 C 1.53034 * 109.31346 * 185.57808 * 4 2 1 6 6 C 1.53039 * 109.53982 * 61.36206 * 5 4 2 7 7 H 1.09006 * 109.49742 * 58.61725 * 6 5 4 8 8 N 1.46500 * 109.49989 * 178.68460 * 6 5 4 9 9 C 1.34774 * 120.00217 * 205.00512 * 8 6 5 10 10 O 1.21289 * 119.99711 * 359.97438 * 9 8 6 11 11 C 1.50693 * 120.00111 * 180.27701 * 9 8 6 12 12 C 1.53007 * 109.47240 * 179.72364 * 11 9 8 13 13 C 1.50693 * 109.47240 * 179.97438 * 12 11 9 14 14 C 1.39680 * 127.05320 * 124.99879 * 13 12 11 15 15 N 1.31383 * 105.90051 * 179.97438 * 14 13 12 16 16 N 1.28598 * 108.71890 * 359.97438 * 15 14 13 17 17 C 1.46496 * 124.61914 * 179.97438 * 16 15 14 18 18 N 1.28598 * 110.76468 * 359.74936 * 16 15 14 19 19 C 1.53197 * 109.31389 * 298.63751 * 6 5 4 20 20 N 1.46919 * 108.77295 * 54.63351 * 19 6 5 21 21 C 1.36937 * 120.63171 * 126.37575 * 20 19 6 22 22 H 1.07998 * 119.99964 * 209.03024 * 21 20 19 23 23 C 1.38809 * 119.99973 * 29.02097 * 21 20 19 24 24 N 1.31617 * 120.00221 * 15.02643 * 23 21 20 25 25 Si 1.86807 * 120.00228 * 195.02713 * 23 21 20 26 26 H 1.48501 * 109.46576 * 0.02562 * 25 23 21 27 27 H 1.48496 * 109.47032 * 120.00053 * 25 23 21 28 28 H 1.48497 * 109.47185 * 240.00130 * 25 23 21 29 29 H 1.08995 * 109.46475 * 180.28408 * 1 2 3 30 30 H 1.08993 * 109.47078 * 300.28752 * 1 2 3 31 31 H 1.09001 * 109.46514 * 60.28973 * 1 2 3 32 32 H 1.08995 * 109.49689 * 65.62197 * 4 2 1 33 33 H 1.09000 * 109.49122 * 305.53177 * 4 2 1 34 34 H 1.09004 * 109.46116 * 301.34092 * 5 4 2 35 35 H 1.08994 * 109.46052 * 181.38385 * 5 4 2 36 36 H 0.96995 * 120.00004 * 24.99622 * 8 6 5 37 37 H 1.08999 * 109.47094 * 299.71699 * 11 9 8 38 38 H 1.08997 * 109.47444 * 59.72138 * 11 9 8 39 39 H 1.08999 * 109.46534 * 299.99677 * 12 11 9 40 40 H 1.08997 * 109.47086 * 59.99555 * 12 11 9 41 41 H 1.07998 * 127.04901 * 359.97438 * 14 13 12 42 42 H 1.09001 * 109.47881 * 90.02179 * 17 16 15 43 43 H 1.09006 * 109.47200 * 210.02430 * 17 16 15 44 44 H 1.09000 * 109.47108 * 330.01818 * 17 16 15 45 45 H 1.08994 * 109.58637 * 174.41988 * 19 6 5 46 46 H 1.09000 * 109.58016 * 294.84574 * 19 6 5 47 47 H 0.97006 * 120.00275 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0437 -0.7278 -1.2463 5 6 3.5676 -0.8465 -1.1711 6 6 3.9570 -1.6657 0.0616 7 1 3.4989 -2.6530 0.0019 8 7 5.4143 -1.8053 0.1155 9 6 5.9678 -2.8489 0.7643 10 8 5.2593 -3.6722 1.3040 11 6 7.4670 -2.9891 0.8251 12 6 7.8299 -4.2452 1.6199 13 6 9.3291 -4.3858 1.6802 14 6 10.1175 -4.5086 2.8266 15 7 11.3572 -4.6046 2.4023 16 7 11.3591 -4.5494 1.1176 17 6 12.5609 -4.6236 0.2831 18 7 10.1620 -4.4247 0.6648 19 6 3.4651 -0.9484 1.3227 20 7 2.0226 -0.7010 1.1937 21 6 1.1537 -1.1160 2.1672 22 1 0.1361 -1.3704 1.9100 23 6 1.5808 -1.2099 3.4846 24 7 2.7037 -0.6320 3.8552 25 14 0.5618 -2.1565 4.7317 26 1 -0.6463 -2.7081 4.0672 27 1 1.3711 -3.2696 5.2895 28 1 0.1509 -1.2448 5.8295 29 1 -0.3632 -1.0276 0.0051 30 1 -0.3633 0.5183 0.8873 31 1 -0.3632 0.5093 -0.8926 32 1 1.7661 -0.1643 -2.1370 33 1 1.6030 -1.7237 -1.2933 34 1 4.0062 0.1488 -1.0991 35 1 3.9379 -1.3422 -2.0684 36 1 5.9809 -1.1468 -0.3159 37 1 7.8655 -3.0714 -0.1861 38 1 7.8943 -2.1137 1.3141 39 1 7.4314 -4.1630 2.6311 40 1 7.4026 -5.1206 1.1310 41 1 9.7777 -4.5219 3.8517 42 1 12.7651 -5.6644 0.0316 43 1 12.4037 -4.0528 -0.6321 44 1 13.4084 -4.2088 0.8289 45 1 3.6518 -1.5742 2.1953 46 1 3.9904 0.0004 1.4317 47 1 3.0020 -0.6973 4.7759 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132317070.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:44 Heat of formation + Delta-G solvation = 59.382942 kcal Electronic energy + Delta-G solvation = -27227.661099 eV Core-core repulsion = 23447.445867 eV Total energy + Delta-G solvation = -3780.215232 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.52014 -40.90504 -39.24089 -36.09789 -35.70752 -34.62582 -33.89622 -32.82766 -31.97556 -31.63566 -28.74886 -27.67371 -26.81925 -25.43901 -23.94875 -23.29360 -22.35146 -21.62897 -21.21867 -20.67785 -18.42586 -18.29288 -17.92216 -17.65645 -17.29972 -16.69176 -16.37659 -15.77108 -15.65260 -15.42188 -15.11265 -15.05345 -14.62949 -14.46715 -14.26332 -14.04633 -13.82565 -13.56750 -13.38901 -13.07694 -13.05422 -12.77414 -12.69543 -12.60302 -12.52643 -12.24184 -12.07139 -11.96221 -11.93588 -11.80795 -11.63415 -11.38016 -11.24515 -11.10836 -10.73317 -10.51694 -10.06920 -9.97233 -8.59328 -7.82148 -5.28231 0.79490 1.39153 1.42426 1.46815 1.52790 1.54619 1.77725 2.31700 2.53551 3.13345 3.33964 3.64509 3.78226 3.86130 4.02074 4.12177 4.17479 4.23566 4.30058 4.32775 4.37774 4.43631 4.47881 4.58470 4.65162 4.69652 4.73456 4.83364 4.85166 4.91818 5.02339 5.05603 5.09344 5.15374 5.21162 5.30227 5.34009 5.39409 5.55454 5.57611 5.64816 5.73202 5.78327 5.86260 6.44646 6.72191 7.19199 7.32150 7.44220 7.93261 8.42136 9.22867 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.015762 B = 0.002872 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.943680 B = 9745.291289 C =11160.237862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.153 3.847 3 H 0.021 0.979 4 C -0.118 4.118 5 C -0.108 4.108 6 C 0.131 3.869 7 H 0.049 0.951 8 N -0.711 5.711 9 C 0.505 3.495 10 O -0.587 6.587 11 C -0.116 4.116 12 C -0.009 4.009 13 C -0.001 4.001 14 C -0.030 4.030 15 N -0.308 5.308 16 N -0.161 5.161 17 C 0.095 3.905 18 N -0.298 5.298 19 C 0.180 3.820 20 N -0.604 5.604 21 C -0.249 4.249 22 H 0.074 0.926 23 C -0.054 4.054 24 N -0.933 5.933 25 Si 0.956 3.044 26 H -0.264 1.264 27 H -0.299 1.299 28 H -0.289 1.289 29 H 0.045 0.955 30 H 0.037 0.963 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.051 0.949 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.413 0.587 37 H 0.116 0.884 38 H 0.107 0.893 39 H 0.087 0.913 40 H 0.079 0.921 41 H 0.217 0.783 42 H 0.103 0.897 43 H 0.118 0.882 44 H 0.118 0.882 45 H 0.045 0.955 46 H -0.004 1.004 47 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.222 -3.341 -12.668 21.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.048 3.952 3 H 0.039 0.961 4 C -0.158 4.158 5 C -0.146 4.146 6 C 0.024 3.976 7 H 0.068 0.932 8 N -0.363 5.363 9 C 0.293 3.707 10 O -0.467 6.467 11 C -0.156 4.156 12 C -0.049 4.049 13 C -0.163 4.163 14 C -0.211 4.211 15 N -0.150 5.150 16 N -0.063 5.063 17 C -0.043 4.043 18 N -0.142 5.142 19 C 0.053 3.947 20 N -0.328 5.328 21 C -0.379 4.379 22 H 0.091 0.909 23 C -0.249 4.249 24 N -0.579 5.579 25 Si 0.785 3.215 26 H -0.189 1.189 27 H -0.226 1.226 28 H -0.216 1.216 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.097 0.903 32 H 0.113 0.887 33 H 0.070 0.930 34 H 0.091 0.909 35 H 0.103 0.897 36 H 0.249 0.751 37 H 0.134 0.866 38 H 0.125 0.875 39 H 0.106 0.894 40 H 0.097 0.903 41 H 0.233 0.767 42 H 0.122 0.878 43 H 0.136 0.864 44 H 0.136 0.864 45 H 0.064 0.936 46 H 0.014 0.986 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 17.936 -3.986 -12.958 22.483 hybrid contribution -0.936 -0.131 1.769 2.005 sum 17.000 -4.116 -11.190 20.764 Atomic orbital electron populations 1.21736 0.94839 1.01099 1.01026 1.20803 0.94244 0.93358 0.86833 0.96106 1.21950 0.94760 1.00805 0.98255 1.21640 0.96940 0.99958 0.96012 1.21476 0.79756 0.98908 0.97448 0.93237 1.45929 1.07445 1.27154 1.55762 1.21283 0.91822 0.80573 0.77046 1.90727 1.65268 1.44028 1.46686 1.21516 0.89561 1.00335 1.04185 1.19503 0.85016 0.97967 1.02380 1.23165 0.97578 1.06106 0.89466 1.25097 0.87762 1.05805 1.02413 1.74025 1.24609 1.19949 0.96388 1.48440 1.06738 1.48425 1.02690 1.22553 0.80776 1.06297 0.94639 1.73938 0.92015 1.19994 1.28278 1.20785 0.83542 0.95265 0.95156 1.44342 1.02692 1.65530 1.20272 1.19503 0.95130 1.36482 0.86796 0.90872 1.25782 0.99069 1.01162 0.98923 1.70160 1.24983 1.46410 1.16392 0.85362 0.78599 0.78074 0.79455 1.18867 1.22621 1.21632 0.93609 0.94345 0.90302 0.88734 0.93014 0.90944 0.89732 0.75070 0.86560 0.87482 0.89411 0.90286 0.76679 0.87848 0.86364 0.86381 0.93649 0.98569 0.94643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.69 7.95 71.98 0.57 -4.12 16 2 C 0.15 6.10 3.50 44.98 0.16 6.25 16 3 H 0.02 0.86 8.14 -2.38 -0.02 0.84 16 4 C -0.12 -3.69 5.37 30.67 0.16 -3.52 16 5 C -0.11 -3.16 5.35 30.62 0.16 -2.99 16 6 C 0.13 5.04 2.60 45.07 0.12 5.16 16 7 H 0.05 2.25 7.58 -2.38 -0.02 2.23 16 8 N -0.71 -22.24 5.08 -442.15 -2.25 -24.48 16 9 C 0.50 17.07 7.80 87.66 0.68 17.75 16 10 O -0.59 -26.33 15.65 -3.06 -0.05 -26.38 16 11 C -0.12 -2.74 5.68 29.85 0.17 -2.57 16 12 C -0.01 -0.22 5.10 29.85 0.15 -0.07 16 13 C 0.00 -0.03 6.61 42.97 0.28 0.25 16 14 C -0.03 -0.66 12.15 85.11 1.03 0.38 16 15 N -0.31 -6.99 12.05 -56.86 -0.69 -7.68 16 16 N -0.16 -3.21 4.35 -206.55 -0.90 -4.11 16 17 C 0.10 0.82 11.57 127.77 1.48 2.30 16 18 N -0.30 -6.91 12.05 -47.25 -0.57 -7.48 16 19 C 0.18 8.98 4.86 86.37 0.42 9.40 16 20 N -0.60 -30.72 2.99 -675.22 -2.02 -32.74 16 21 C -0.25 -14.00 8.61 84.03 0.72 -13.27 16 22 H 0.07 3.99 6.20 -2.91 -0.02 3.97 16 23 C -0.05 -3.19 4.96 84.86 0.42 -2.77 16 24 N -0.93 -57.81 11.14 21.65 0.24 -57.57 16 25 Si 0.96 47.69 29.58 68.60 2.03 49.72 16 26 H -0.26 -12.44 7.11 99.48 0.71 -11.73 16 27 H -0.30 -15.28 7.11 99.48 0.71 -14.58 16 28 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 29 H 0.04 1.71 7.40 -2.39 -0.02 1.69 16 30 H 0.04 1.53 7.66 -2.39 -0.02 1.51 16 31 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 35 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.41 9.41 8.60 -92.71 -0.80 8.61 16 37 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 38 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 39 H 0.09 2.33 8.09 -2.39 -0.02 2.31 16 40 H 0.08 2.12 8.10 -2.39 -0.02 2.10 16 41 H 0.22 3.63 8.06 -2.91 -0.02 3.61 16 42 H 0.10 0.57 8.14 -2.39 -0.02 0.56 16 43 H 0.12 0.62 8.14 -2.38 -0.02 0.60 16 44 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 45 H 0.05 2.73 6.06 -2.39 -0.01 2.72 16 46 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 47 H 0.24 14.81 8.31 -92.70 -0.77 14.04 16 Total: -1.00 -81.18 380.08 2.52 -78.67 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: 0.17 Total: 19.88 kcal Atomic # 6 Polarization: 5.63 SS G_CDS: 6.54 Total: 12.17 kcal Atomic # 7 Polarization: -127.88 SS G_CDS: -6.18 Total: -134.06 kcal Atomic # 8 Polarization: -26.33 SS G_CDS: -0.05 Total: -26.38 kcal Atomic # 14 Polarization: 47.69 SS G_CDS: 2.03 Total: 49.72 kcal Total: -81.18 2.52 -78.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132317070.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.052 kcal (2) G-P(sol) polarization free energy of solvation -81.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds