Wall clock time and date at job start Fri Apr 10 2020 18:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.58545 * 2 1 4 4 C 1.53183 * 109.58990 * 239.71599 * 2 1 3 5 5 C 1.53039 * 109.31591 * 185.43611 * 4 2 1 6 6 C 1.53040 * 109.53966 * 61.36295 * 5 4 2 7 7 H 1.08997 * 109.50164 * 178.65225 * 6 5 4 8 8 N 1.46503 * 109.49585 * 58.58534 * 6 5 4 9 9 C 1.34781 * 119.99595 * 155.06422 * 8 6 5 10 10 O 1.21276 * 120.00057 * 0.02562 * 9 8 6 11 11 C 1.50703 * 119.99819 * 180.02562 * 9 8 6 12 12 C 1.53000 * 109.47223 * 180.02562 * 11 9 8 13 13 C 1.50693 * 109.47183 * 179.97438 * 12 11 9 14 14 C 1.39683 * 127.04841 * 124.99722 * 13 12 11 15 15 N 1.31378 * 105.89818 * 179.97438 * 14 13 12 16 16 N 1.28598 * 108.71871 * 359.97438 * 15 14 13 17 17 C 1.46502 * 124.61447 * 179.97438 * 16 15 14 18 18 N 1.28592 * 110.76493 * 359.74940 * 16 15 14 19 19 C 1.53196 * 109.33618 * 298.62379 * 6 5 4 20 20 N 1.46929 * 109.70201 * 120.34976 * 2 1 3 21 21 C 1.36936 * 120.63150 * 353.49212 * 20 2 1 22 22 H 1.08003 * 119.99608 * 29.50406 * 21 20 2 23 23 C 1.38811 * 119.99862 * 209.49986 * 21 20 2 24 24 N 1.31620 * 119.99806 * 16.14100 * 23 21 20 25 25 Si 1.86799 * 120.00024 * 196.13524 * 23 21 20 26 26 H 1.48507 * 109.46931 * 91.77470 * 25 23 21 27 27 H 1.48496 * 109.47116 * 211.77470 * 25 23 21 28 28 H 1.48498 * 109.47108 * 331.77447 * 25 23 21 29 29 H 1.08993 * 109.46876 * 180.28158 * 1 2 3 30 30 H 1.09000 * 109.46899 * 300.28662 * 1 2 3 31 31 H 1.09003 * 109.46802 * 60.28740 * 1 2 3 32 32 H 1.08999 * 109.49983 * 65.48065 * 4 2 1 33 33 H 1.09006 * 109.52443 * 305.40159 * 4 2 1 34 34 H 1.08998 * 109.46051 * 301.33893 * 5 4 2 35 35 H 1.08997 * 109.46200 * 181.38649 * 5 4 2 36 36 H 0.96995 * 120.00164 * 335.07015 * 8 6 5 37 37 H 1.09004 * 109.46826 * 60.00119 * 11 9 8 38 38 H 1.09000 * 109.46900 * 300.00461 * 11 9 8 39 39 H 1.08997 * 109.46654 * 300.00183 * 12 11 9 40 40 H 1.09002 * 109.46632 * 59.99930 * 12 11 9 41 41 H 1.08002 * 127.04610 * 359.95976 * 14 13 12 42 42 H 1.09007 * 109.46736 * 90.03337 * 17 16 15 43 43 H 1.09001 * 109.47058 * 210.02351 * 17 16 15 44 44 H 1.08993 * 109.47507 * 330.02967 * 17 16 15 45 45 H 1.09006 * 109.58115 * 174.43954 * 19 6 5 46 46 H 1.09001 * 109.58362 * 294.85429 * 19 6 5 47 47 H 0.96996 * 119.99582 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7278 -1.2462 5 6 3.5679 -0.8433 -1.1728 6 6 3.9604 -1.6607 0.0600 7 1 5.0449 -1.7629 0.0987 8 7 3.3466 -2.9887 -0.0180 9 6 3.9054 -4.0286 0.6323 10 8 4.9159 -3.8649 1.2825 11 6 3.2743 -5.3947 0.5516 12 6 4.0996 -6.3871 1.3731 13 6 3.4682 -7.7531 1.2929 14 6 4.0810 -8.9410 0.8874 15 7 3.1573 -9.8710 0.9761 16 7 2.0678 -9.3318 1.3955 17 6 0.8136 -10.0552 1.6190 18 7 2.2304 -8.0721 1.5963 19 6 3.4691 -0.9438 1.3216 20 7 2.0254 -0.6989 1.1937 21 6 1.1584 -1.1150 2.1686 22 1 0.1433 -1.3793 1.9115 23 6 1.5844 -1.1971 3.4872 24 7 2.6905 -0.5892 3.8605 25 14 0.5877 -2.1701 4.7319 26 1 1.0882 -3.5673 4.7833 27 1 0.7243 -1.5457 6.0722 28 1 -0.8418 -2.1708 4.3295 29 1 -0.3633 -1.0276 0.0051 30 1 -0.3633 0.5183 0.8874 31 1 -0.3633 0.5094 -0.8926 32 1 1.7639 -0.1655 -2.1371 33 1 1.6051 -1.7246 -1.2926 34 1 4.0046 0.1528 -1.1022 35 1 3.9382 -1.3390 -2.0701 36 1 2.5382 -3.1195 -0.5378 37 1 3.2440 -5.7200 -0.4883 38 1 2.2599 -5.3504 0.9481 39 1 5.1140 -6.4315 0.9770 40 1 4.1295 -6.0615 2.4130 41 1 5.1044 -9.0686 0.5666 42 1 0.7833 -10.4213 2.6453 43 1 -0.0283 -9.3844 1.4477 44 1 0.7526 -10.8980 0.9307 45 1 3.6587 -1.5688 2.1943 46 1 3.9927 0.0062 1.4293 47 1 2.9884 -0.6469 4.7818 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132317072.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:50 Heat of formation + Delta-G solvation = 86.423554 kcal Electronic energy + Delta-G solvation = -28021.763145 eV Core-core repulsion = 24242.720482 eV Total energy + Delta-G solvation = -3779.042663 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.58855 -39.43912 -37.60193 -34.86039 -34.00703 -32.96034 -32.68050 -31.68691 -30.50693 -29.83608 -27.78513 -26.20498 -25.05929 -24.40005 -22.38618 -22.13712 -21.06603 -20.39059 -19.85251 -18.66754 -17.45519 -16.96728 -16.64000 -16.17312 -15.40593 -15.23336 -14.85536 -14.67970 -14.08414 -13.93162 -13.68788 -13.48520 -13.30464 -13.27228 -13.05105 -12.90792 -12.51069 -12.43810 -11.92102 -11.90668 -11.49593 -11.18351 -11.13780 -10.91359 -10.90466 -10.81891 -10.75966 -10.67870 -10.34374 -10.28374 -10.26011 -9.92385 -9.50228 -9.41647 -9.29024 -9.05292 -8.39988 -8.26568 -6.55331 -5.70618 -3.14576 1.74951 2.24852 2.38089 3.29431 3.42258 3.48268 3.50435 3.83751 4.03132 4.54448 4.72185 4.77529 4.87721 5.03357 5.09062 5.26023 5.34800 5.38033 5.41400 5.44384 5.54597 5.57063 5.63873 5.78235 5.90157 6.05110 6.08358 6.14952 6.19258 6.25132 6.33473 6.36147 6.38027 6.47723 6.57092 6.62062 6.64581 6.74869 6.96077 7.08201 7.16940 7.45947 7.74038 7.88526 8.20885 8.27984 8.53729 8.90951 9.28123 9.92777 10.49226 11.37342 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.011727 B = 0.003908 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2387.106804 B = 7163.969241 C = 8168.105350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.165 3.835 3 H 0.024 0.976 4 C -0.130 4.130 5 C -0.118 4.118 6 C 0.118 3.882 7 H 0.074 0.926 8 N -0.701 5.701 9 C 0.514 3.486 10 O -0.550 6.550 11 C -0.133 4.133 12 C -0.013 4.013 13 C 0.011 3.989 14 C -0.024 4.024 15 N -0.295 5.295 16 N -0.164 5.164 17 C 0.109 3.891 18 N -0.283 5.283 19 C 0.163 3.837 20 N -0.582 5.582 21 C -0.251 4.251 22 H 0.067 0.933 23 C 0.008 3.992 24 N -0.898 5.898 25 Si 0.893 3.107 26 H -0.287 1.287 27 H -0.292 1.292 28 H -0.280 1.280 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.036 0.964 32 H 0.051 0.949 33 H 0.055 0.945 34 H 0.069 0.931 35 H 0.050 0.950 36 H 0.394 0.606 37 H 0.085 0.915 38 H 0.097 0.903 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.197 0.803 42 H 0.087 0.913 43 H 0.102 0.898 44 H 0.100 0.900 45 H 0.095 0.905 46 H 0.023 0.977 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.002 -13.145 -10.570 16.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.059 3.941 3 H 0.041 0.959 4 C -0.169 4.169 5 C -0.156 4.156 6 C 0.012 3.988 7 H 0.092 0.908 8 N -0.352 5.352 9 C 0.300 3.700 10 O -0.428 6.428 11 C -0.174 4.174 12 C -0.053 4.053 13 C -0.152 4.152 14 C -0.206 4.206 15 N -0.137 5.137 16 N -0.064 5.064 17 C -0.031 4.031 18 N -0.125 5.125 19 C 0.036 3.964 20 N -0.306 5.306 21 C -0.380 4.380 22 H 0.085 0.915 23 C -0.191 4.191 24 N -0.542 5.542 25 Si 0.724 3.276 26 H -0.214 1.214 27 H -0.219 1.219 28 H -0.206 1.206 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.069 0.931 36 H 0.229 0.771 37 H 0.104 0.896 38 H 0.116 0.884 39 H 0.111 0.889 40 H 0.109 0.891 41 H 0.214 0.786 42 H 0.105 0.895 43 H 0.121 0.879 44 H 0.119 0.881 45 H 0.113 0.887 46 H 0.041 0.959 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -1.443 -13.707 -9.705 16.857 hybrid contribution -0.174 -0.152 0.402 0.464 sum -1.617 -13.859 -9.303 16.770 Atomic orbital electron populations 1.21787 0.96174 1.01210 1.00089 1.20448 0.92821 0.93615 0.87245 0.95884 1.22062 0.95210 1.00653 0.99017 1.21683 0.96944 1.00124 0.96877 1.21741 0.96924 0.82063 0.98024 0.90765 1.45846 1.29335 1.08586 1.51391 1.20349 0.84477 0.86113 0.79031 1.90670 1.25664 1.85393 1.41098 1.21565 1.01556 0.92515 1.01740 1.19639 0.97895 0.85272 1.02516 1.23326 0.90203 0.98457 1.03226 1.24670 1.00748 0.89071 1.06152 1.73994 0.94258 1.28167 1.17266 1.47906 1.10081 1.03501 1.44950 1.22081 0.80040 0.96996 1.03947 1.74089 1.20581 0.97826 1.20044 1.21170 0.83676 0.96964 0.94540 1.44050 1.02680 1.64805 1.19032 1.19070 0.94969 1.37888 0.86089 0.91523 1.25034 0.97784 0.99396 0.96914 1.69999 1.24233 1.43221 1.16733 0.86425 0.79686 0.80295 0.81215 1.21399 1.21885 1.20566 0.92976 0.92101 0.94487 0.92991 0.92672 0.91259 0.93122 0.77135 0.89646 0.88426 0.88908 0.89056 0.78606 0.89452 0.87907 0.88142 0.88697 0.95865 0.93719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 7.95 37.16 0.30 -2.15 16 2 C 0.17 3.25 3.49 -67.60 -0.24 3.01 16 3 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 4 C -0.13 -2.05 5.20 -26.62 -0.14 -2.19 16 5 C -0.12 -1.85 5.59 -26.69 -0.15 -2.00 16 6 C 0.12 2.24 2.81 -67.81 -0.19 2.05 16 7 H 0.07 1.45 7.58 -51.93 -0.39 1.05 16 8 N -0.70 -12.27 4.92 -53.69 -0.26 -12.53 16 9 C 0.51 9.32 7.80 -10.98 -0.09 9.23 16 10 O -0.55 -11.90 15.65 5.56 0.09 -11.81 16 11 C -0.13 -1.91 5.68 -27.88 -0.16 -2.07 16 12 C -0.01 -0.19 5.10 -27.89 -0.14 -0.33 16 13 C 0.01 0.15 6.61 -82.25 -0.54 -0.40 16 14 C -0.02 -0.29 12.15 -17.21 -0.21 -0.50 16 15 N -0.30 -3.77 12.05 30.68 0.37 -3.40 16 16 N -0.16 -2.03 4.35 -16.64 -0.07 -2.10 16 17 C 0.11 0.78 11.57 59.85 0.69 1.47 16 18 N -0.28 -4.11 12.05 33.71 0.41 -3.71 16 19 C 0.16 3.88 4.89 -3.67 -0.02 3.86 16 20 N -0.58 -13.79 2.91 -164.72 -0.48 -14.27 16 21 C -0.25 -6.60 8.59 -15.06 -0.13 -6.73 16 22 H 0.07 1.72 6.23 -52.48 -0.33 1.40 16 23 C 0.01 0.22 4.92 -17.43 -0.09 0.13 16 24 N -0.90 -26.47 11.25 55.49 0.62 -25.84 16 25 Si 0.89 22.15 29.58 -169.99 -5.03 17.12 16 26 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 27 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 28 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 29 H 0.05 0.95 7.41 -51.93 -0.38 0.56 16 30 H 0.06 1.21 7.67 -51.93 -0.40 0.81 16 31 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.05 0.85 6.40 -51.93 -0.33 0.52 16 34 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.39 6.18 6.77 -40.82 -0.28 5.90 16 37 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 39 H 0.09 1.15 8.09 -51.93 -0.42 0.73 16 40 H 0.09 1.46 8.10 -51.93 -0.42 1.04 16 41 H 0.20 1.64 8.06 -52.49 -0.42 1.22 16 42 H 0.09 0.51 8.14 -51.92 -0.42 0.08 16 43 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.09 2.67 6.15 -51.93 -0.32 2.35 16 46 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 376.76 15.07 5.68 5.68 Total: -1.00 -34.17 376.76 -7.26 -41.43 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -7.48 Total: 6.03 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: -1.10 Total: 3.40 kcal Atomic # 7 Polarization: -62.43 SS G_CDS: 0.59 Total: -61.85 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.09 Total: -11.81 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.03 Total: 17.12 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.17 -7.26 -41.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132317072.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.855 kcal (2) G-P(sol) polarization free energy of solvation -34.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds