Wall clock time and date at job start Fri Apr 10 2020 18:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.58517 * 2 1 4 4 C 1.53194 * 109.58643 * 120.28180 * 2 1 3 5 5 C 1.53041 * 109.30987 * 174.42232 * 4 2 1 6 6 C 1.53036 * 109.53805 * 298.63377 * 5 4 2 7 7 H 1.08997 * 109.49820 * 301.38227 * 6 5 4 8 8 N 1.46505 * 109.49786 * 181.32135 * 6 5 4 9 9 C 1.34771 * 119.99830 * 155.00257 * 8 6 5 10 10 O 1.21275 * 120.00473 * 359.97438 * 9 8 6 11 11 C 1.50703 * 119.99728 * 179.97438 * 9 8 6 12 12 C 1.52998 * 109.47524 * 179.97438 * 11 9 8 13 13 C 1.52992 * 109.47404 * 180.02562 * 12 11 9 14 14 N 1.46503 * 109.47274 * 180.02562 * 13 12 11 15 15 C 1.34427 * 126.82581 * 124.99582 * 14 13 12 16 16 N 1.30830 * 108.07617 * 180.20608 * 15 14 13 17 17 C 1.33241 * 109.82972 * 359.60614 * 16 15 14 18 18 N 1.30706 * 108.94712 * 0.40181 * 17 16 15 19 19 C 1.53193 * 109.31513 * 61.36763 * 6 5 4 20 20 N 1.46927 * 108.77347 * 305.36398 * 19 6 5 21 21 C 1.36940 * 120.63121 * 233.58512 * 20 19 6 22 22 H 1.07997 * 119.99626 * 150.18548 * 21 20 19 23 23 C 1.38805 * 119.99975 * 330.17953 * 21 20 19 24 24 N 1.31630 * 119.99956 * 344.49373 * 23 21 20 25 25 Si 1.86797 * 120.00271 * 164.49276 * 23 21 20 26 26 H 1.48502 * 109.46751 * 59.99931 * 25 23 21 27 27 H 1.48499 * 109.47447 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.46930 * 300.00316 * 25 23 21 29 29 H 1.09004 * 109.47202 * 299.71683 * 1 2 3 30 30 H 1.09003 * 109.47452 * 59.72004 * 1 2 3 31 31 H 1.09008 * 109.47490 * 179.72043 * 1 2 3 32 32 H 1.09003 * 109.49468 * 54.47293 * 4 2 1 33 33 H 1.08998 * 109.52223 * 294.39059 * 4 2 1 34 34 H 1.08997 * 109.45773 * 178.61762 * 5 4 2 35 35 H 1.08999 * 109.44766 * 58.65038 * 5 4 2 36 36 H 0.96999 * 119.99420 * 334.99765 * 8 6 5 37 37 H 1.09001 * 109.46799 * 59.99753 * 11 9 8 38 38 H 1.09002 * 109.47574 * 300.00063 * 11 9 8 39 39 H 1.08998 * 109.46684 * 59.99916 * 12 11 9 40 40 H 1.09002 * 109.46885 * 300.00654 * 12 11 9 41 41 H 1.08998 * 109.47438 * 60.00170 * 13 12 11 42 42 H 1.09000 * 109.47085 * 299.99716 * 13 12 11 43 43 H 1.07996 * 125.96323 * 359.95129 * 15 14 13 44 44 H 1.08000 * 125.52597 * 180.12790 * 17 16 15 45 45 H 1.08999 * 109.58638 * 65.15049 * 19 6 5 46 46 H 1.08994 * 109.58884 * 185.57734 * 19 6 5 47 47 H 0.97000 * 119.99786 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0435 -0.7278 1.2464 5 6 3.5674 -0.8464 1.1712 6 6 3.9568 -1.6658 -0.0614 7 1 3.4987 -2.6530 -0.0016 8 7 5.4142 -1.8055 -0.1152 9 6 5.9675 -2.8491 -0.7641 10 8 5.2591 -3.6728 -1.3030 11 6 7.4667 -2.9926 -0.8199 12 6 7.8295 -4.2519 -1.6093 13 6 9.3514 -4.3979 -1.6655 14 7 9.6989 -5.6035 -2.4218 15 6 10.5072 -5.6774 -3.4934 16 7 10.5563 -6.9264 -3.8795 17 6 9.8026 -7.6774 -3.0774 18 7 9.2542 -6.9119 -2.1710 19 6 3.4650 -0.9486 -1.3226 20 7 2.0225 -0.7011 -1.1936 21 6 1.1536 -1.1155 -2.1676 22 1 0.1396 -1.3821 -1.9087 23 6 1.5762 -1.1929 -3.4875 24 7 2.6871 -0.5925 -3.8591 25 14 0.5685 -2.1489 -4.7364 26 1 -0.7919 -1.5608 -4.8291 27 1 1.2301 -2.0791 -6.0640 28 1 0.4665 -3.5673 -4.3086 29 1 -0.3634 0.5094 0.8925 30 1 -0.3634 0.5182 -0.8875 31 1 -0.3634 -1.0277 -0.0050 32 1 1.6029 -1.7237 1.2935 33 1 1.7659 -0.1646 2.1373 34 1 3.9377 -1.3422 2.0685 35 1 4.0058 0.1489 1.0990 36 1 5.9808 -1.1468 0.3161 37 1 7.8620 -3.0724 0.1927 38 1 7.8973 -2.1194 -1.3102 39 1 7.4341 -4.1725 -2.6219 40 1 7.3990 -5.1249 -1.1186 41 1 9.7465 -4.4775 -0.6527 42 1 9.7823 -3.5250 -2.1559 43 1 11.0225 -4.8494 -3.9574 44 1 9.6635 -8.7448 -3.1650 45 1 3.9902 0.0002 -1.4317 46 1 3.6517 -1.5745 -2.1951 47 1 2.9826 -0.6468 -4.7814 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132406450.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:00 Heat of formation + Delta-G solvation = 64.985425 kcal Electronic energy + Delta-G solvation = -27156.393131 eV Core-core repulsion = 23376.420841 eV Total energy + Delta-G solvation = -3779.972290 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.19861 -39.58384 -37.71718 -35.71454 -34.38118 -32.81892 -32.34512 -31.36258 -30.66241 -29.85048 -27.56589 -25.87026 -24.92494 -23.22981 -22.25991 -22.16860 -21.37208 -20.58080 -19.95479 -19.21312 -17.67342 -16.58287 -16.45006 -16.28049 -15.57767 -15.49579 -15.13263 -14.82175 -14.35766 -14.01930 -13.89758 -13.79749 -13.44586 -13.36491 -12.98449 -12.85178 -12.46039 -12.38377 -11.97708 -11.81650 -11.79494 -11.42715 -11.12567 -11.01651 -10.89293 -10.68928 -10.52961 -10.40876 -10.27210 -10.19151 -9.97517 -9.96956 -9.87453 -9.76622 -9.46144 -9.33909 -8.53553 -8.41045 -6.60493 -5.74374 -3.18971 1.46287 2.10869 2.80681 3.01190 3.42115 3.48769 3.49926 3.51613 4.13215 4.18911 4.52970 4.59770 4.63172 4.78576 4.94915 5.00640 5.15356 5.24880 5.33880 5.36504 5.39640 5.52131 5.57715 5.68253 5.84240 5.96399 6.05549 6.09358 6.13296 6.25860 6.26329 6.30199 6.38663 6.45053 6.49883 6.60388 6.62047 6.74059 6.94747 7.04178 7.12235 7.31486 7.72307 7.85424 7.90023 7.92610 8.50445 8.64785 9.24901 9.89072 10.44507 11.33833 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.013650 B = 0.002936 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.846501 B = 9533.673791 C =11032.010271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.165 3.835 3 H 0.024 0.976 4 C -0.127 4.127 5 C -0.116 4.116 6 C 0.116 3.884 7 H 0.081 0.919 8 N -0.722 5.722 9 C 0.507 3.493 10 O -0.531 6.531 11 C -0.137 4.137 12 C -0.116 4.116 13 C 0.129 3.871 14 N -0.376 5.376 15 C 0.252 3.748 16 N -0.551 5.551 17 C 0.194 3.806 18 N -0.313 5.313 19 C 0.170 3.830 20 N -0.583 5.583 21 C -0.254 4.254 22 H 0.069 0.931 23 C 0.007 3.993 24 N -0.901 5.901 25 Si 0.900 3.100 26 H -0.283 1.283 27 H -0.291 1.291 28 H -0.283 1.283 29 H 0.037 0.963 30 H 0.061 0.939 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.054 0.946 34 H 0.050 0.950 35 H 0.058 0.942 36 H 0.392 0.608 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.079 0.921 40 H 0.086 0.914 41 H 0.090 0.910 42 H 0.103 0.897 43 H 0.218 0.782 44 H 0.216 0.784 45 H 0.016 0.984 46 H 0.092 0.908 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.183 -2.378 8.958 17.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.059 3.941 3 H 0.042 0.958 4 C -0.166 4.166 5 C -0.154 4.154 6 C 0.010 3.990 7 H 0.099 0.901 8 N -0.373 5.373 9 C 0.293 3.707 10 O -0.407 6.407 11 C -0.178 4.178 12 C -0.155 4.155 13 C 0.007 3.993 14 N -0.167 5.167 15 C -0.045 4.045 16 N -0.278 5.278 17 C -0.109 4.109 18 N -0.141 5.141 19 C 0.043 3.957 20 N -0.307 5.307 21 C -0.383 4.383 22 H 0.087 0.913 23 C -0.192 4.192 24 N -0.545 5.545 25 Si 0.730 3.270 26 H -0.209 1.209 27 H -0.217 1.217 28 H -0.209 1.209 29 H 0.056 0.944 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.077 0.923 36 H 0.225 0.775 37 H 0.111 0.889 38 H 0.113 0.887 39 H 0.098 0.902 40 H 0.104 0.896 41 H 0.108 0.892 42 H 0.121 0.879 43 H 0.235 0.765 44 H 0.232 0.768 45 H 0.034 0.966 46 H 0.110 0.890 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 14.387 -3.275 8.708 17.133 hybrid contribution -0.038 0.198 -0.539 0.576 sum 14.349 -3.078 8.168 16.796 Atomic orbital electron populations 1.21802 0.96002 1.01435 1.00158 1.20483 0.93086 0.93508 0.87068 0.95795 1.22051 0.94348 1.01326 0.98915 1.21671 0.97401 0.99582 0.96719 1.21980 0.77973 1.00799 0.98200 0.90133 1.46088 1.08586 1.26664 1.55916 1.20383 0.90074 0.81576 0.78716 1.90770 1.63558 1.41980 1.44376 1.21559 0.94241 0.99601 1.02374 1.21575 0.92403 0.98715 1.02809 1.21929 0.97921 0.82564 0.96895 1.50584 1.34872 1.07327 1.23891 1.26079 0.93527 0.97115 0.87789 1.70526 1.25724 1.01643 1.29932 1.26014 0.93617 1.01245 0.90022 1.78081 1.23069 0.88004 1.24924 1.21048 0.83585 0.96761 0.94312 1.44014 1.02638 1.64654 1.19364 1.19089 0.95075 1.38143 0.86012 0.91310 1.25073 0.97813 0.99240 0.97031 1.69998 1.24120 1.43650 1.16735 0.86410 0.79472 0.80486 0.80646 1.20885 1.21679 1.20910 0.94353 0.92012 0.92785 0.92102 0.92702 0.93161 0.92328 0.77546 0.88943 0.88697 0.90238 0.89553 0.89188 0.87877 0.76547 0.76788 0.96607 0.88992 0.93739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 7.95 37.16 0.30 -2.26 16 2 C 0.17 3.36 3.50 -67.60 -0.24 3.13 16 3 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 4 C -0.13 -2.13 5.37 -26.61 -0.14 -2.27 16 5 C -0.12 -1.82 5.35 -26.69 -0.14 -1.96 16 6 C 0.12 2.20 2.61 -67.81 -0.18 2.02 16 7 H 0.08 1.78 7.58 -51.93 -0.39 1.39 16 8 N -0.72 -10.90 5.08 -53.69 -0.27 -11.17 16 9 C 0.51 8.10 7.80 -10.99 -0.09 8.02 16 10 O -0.53 -11.49 15.64 5.56 0.09 -11.40 16 11 C -0.14 -1.34 5.70 -27.88 -0.16 -1.50 16 12 C -0.12 -1.28 4.72 -26.74 -0.13 -1.40 16 13 C 0.13 0.95 6.55 -4.04 -0.03 0.93 16 14 N -0.38 -3.89 3.69 -62.63 -0.23 -4.12 16 15 C 0.25 2.34 12.63 -90.66 -1.14 1.19 16 16 N -0.55 -6.48 11.19 -15.84 -0.18 -6.66 16 17 C 0.19 2.22 13.03 -91.82 -1.20 1.02 16 18 N -0.31 -4.02 12.57 29.29 0.37 -3.66 16 19 C 0.17 4.06 4.86 -3.71 -0.02 4.04 16 20 N -0.58 -14.48 2.99 -164.78 -0.49 -14.97 16 21 C -0.25 -6.97 8.58 -15.06 -0.13 -7.10 16 22 H 0.07 1.84 6.23 -52.49 -0.33 1.51 16 23 C 0.01 0.21 4.94 -17.43 -0.09 0.12 16 24 N -0.90 -26.63 11.23 55.49 0.62 -26.01 16 25 Si 0.90 22.57 29.58 -169.99 -5.03 17.54 16 26 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 27 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 28 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 29 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.06 1.25 7.67 -51.93 -0.40 0.85 16 31 H 0.05 1.03 7.40 -51.92 -0.38 0.65 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.39 4.38 8.60 -40.82 -0.35 4.03 16 37 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.08 1.09 8.10 -51.93 -0.42 0.67 16 40 H 0.09 1.18 8.10 -51.93 -0.42 0.76 16 41 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.10 0.42 8.09 -51.93 -0.42 0.00 16 43 H 0.22 0.98 8.06 -52.49 -0.42 0.56 16 44 H 0.22 1.71 8.06 -52.49 -0.42 1.28 16 45 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.09 2.61 6.15 -51.93 -0.32 2.29 16 47 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 380.62 15.07 5.74 5.74 Total: -1.00 -37.00 380.62 -10.40 -47.41 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -7.64 Total: 3.34 kcal Atomic # 6 Polarization: 7.35 SS G_CDS: -3.38 Total: 3.98 kcal Atomic # 7 Polarization: -66.41 SS G_CDS: -0.18 Total: -66.60 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.09 Total: -11.40 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.03 Total: 17.54 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -37.00 -10.40 -47.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132406450.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.391 kcal (2) G-P(sol) polarization free energy of solvation -37.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds