Wall clock time and date at job start Fri Apr 10 2020 18:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.58517 * 2 1 4 4 C 1.53194 * 109.58643 * 120.28180 * 2 1 3 5 5 C 1.53041 * 109.30987 * 174.42232 * 4 2 1 6 6 C 1.53036 * 109.53805 * 298.63377 * 5 4 2 7 7 H 1.08997 * 109.49820 * 301.38227 * 6 5 4 8 8 N 1.46505 * 109.49786 * 181.32135 * 6 5 4 9 9 C 1.34771 * 119.99830 * 155.00257 * 8 6 5 10 10 O 1.21275 * 120.00473 * 359.97438 * 9 8 6 11 11 C 1.50703 * 119.99728 * 179.97438 * 9 8 6 12 12 C 1.52998 * 109.47524 * 179.97438 * 11 9 8 13 13 C 1.52992 * 109.47404 * 180.02562 * 12 11 9 14 14 N 1.46503 * 109.47274 * 180.02562 * 13 12 11 15 15 C 1.34427 * 126.82581 * 124.99582 * 14 13 12 16 16 N 1.30830 * 108.07617 * 180.20608 * 15 14 13 17 17 C 1.33241 * 109.82972 * 359.60614 * 16 15 14 18 18 N 1.30706 * 108.94712 * 0.40181 * 17 16 15 19 19 C 1.53193 * 109.31513 * 61.36763 * 6 5 4 20 20 N 1.46927 * 108.77347 * 305.36398 * 19 6 5 21 21 C 1.36940 * 120.63121 * 233.58512 * 20 19 6 22 22 H 1.07997 * 119.99626 * 150.18548 * 21 20 19 23 23 C 1.38805 * 119.99975 * 330.17953 * 21 20 19 24 24 N 1.31630 * 119.99956 * 344.49373 * 23 21 20 25 25 Si 1.86797 * 120.00271 * 164.49276 * 23 21 20 26 26 H 1.48502 * 109.46751 * 59.99931 * 25 23 21 27 27 H 1.48499 * 109.47447 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.46930 * 300.00316 * 25 23 21 29 29 H 1.09004 * 109.47202 * 299.71683 * 1 2 3 30 30 H 1.09003 * 109.47452 * 59.72004 * 1 2 3 31 31 H 1.09008 * 109.47490 * 179.72043 * 1 2 3 32 32 H 1.09003 * 109.49468 * 54.47293 * 4 2 1 33 33 H 1.08998 * 109.52223 * 294.39059 * 4 2 1 34 34 H 1.08997 * 109.45773 * 178.61762 * 5 4 2 35 35 H 1.08999 * 109.44766 * 58.65038 * 5 4 2 36 36 H 0.96999 * 119.99420 * 334.99765 * 8 6 5 37 37 H 1.09001 * 109.46799 * 59.99753 * 11 9 8 38 38 H 1.09002 * 109.47574 * 300.00063 * 11 9 8 39 39 H 1.08998 * 109.46684 * 59.99916 * 12 11 9 40 40 H 1.09002 * 109.46885 * 300.00654 * 12 11 9 41 41 H 1.08998 * 109.47438 * 60.00170 * 13 12 11 42 42 H 1.09000 * 109.47085 * 299.99716 * 13 12 11 43 43 H 1.07996 * 125.96323 * 359.95129 * 15 14 13 44 44 H 1.08000 * 125.52597 * 180.12790 * 17 16 15 45 45 H 1.08999 * 109.58638 * 65.15049 * 19 6 5 46 46 H 1.08994 * 109.58884 * 185.57734 * 19 6 5 47 47 H 0.97000 * 119.99786 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0435 -0.7278 1.2464 5 6 3.5674 -0.8464 1.1712 6 6 3.9568 -1.6658 -0.0614 7 1 3.4987 -2.6530 -0.0016 8 7 5.4142 -1.8055 -0.1152 9 6 5.9675 -2.8491 -0.7641 10 8 5.2591 -3.6728 -1.3030 11 6 7.4667 -2.9926 -0.8199 12 6 7.8295 -4.2519 -1.6093 13 6 9.3514 -4.3979 -1.6655 14 7 9.6989 -5.6035 -2.4218 15 6 10.5072 -5.6774 -3.4934 16 7 10.5563 -6.9264 -3.8795 17 6 9.8026 -7.6774 -3.0774 18 7 9.2542 -6.9119 -2.1710 19 6 3.4650 -0.9486 -1.3226 20 7 2.0225 -0.7011 -1.1936 21 6 1.1536 -1.1155 -2.1676 22 1 0.1396 -1.3821 -1.9087 23 6 1.5762 -1.1929 -3.4875 24 7 2.6871 -0.5925 -3.8591 25 14 0.5685 -2.1489 -4.7364 26 1 -0.7919 -1.5608 -4.8291 27 1 1.2301 -2.0791 -6.0640 28 1 0.4665 -3.5673 -4.3086 29 1 -0.3634 0.5094 0.8925 30 1 -0.3634 0.5182 -0.8875 31 1 -0.3634 -1.0277 -0.0050 32 1 1.6029 -1.7237 1.2935 33 1 1.7659 -0.1646 2.1373 34 1 3.9377 -1.3422 2.0685 35 1 4.0058 0.1489 1.0990 36 1 5.9808 -1.1468 0.3161 37 1 7.8620 -3.0724 0.1927 38 1 7.8973 -2.1194 -1.3102 39 1 7.4341 -4.1725 -2.6219 40 1 7.3990 -5.1249 -1.1186 41 1 9.7465 -4.4775 -0.6527 42 1 9.7823 -3.5250 -2.1559 43 1 11.0225 -4.8494 -3.9574 44 1 9.6635 -8.7448 -3.1650 45 1 3.9902 0.0002 -1.4317 46 1 3.6517 -1.5745 -2.1951 47 1 2.9826 -0.6468 -4.7814 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132406450.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:59 Heat of formation + Delta-G solvation = 39.937077 kcal Electronic energy + Delta-G solvation = -27157.479309 eV Core-core repulsion = 23376.420841 eV Total energy + Delta-G solvation = -3781.058468 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.96110 -40.95587 -39.29146 -36.57120 -35.92201 -34.66278 -33.29970 -32.18296 -32.07361 -31.71021 -28.53712 -27.55600 -26.56490 -24.31188 -23.85915 -22.90272 -22.36340 -21.89590 -21.34053 -20.77358 -18.55079 -18.35141 -17.65541 -17.36204 -17.01117 -16.69352 -16.35078 -15.91314 -15.72087 -15.40616 -15.26276 -15.01467 -14.98262 -14.61515 -14.41958 -14.16942 -13.77867 -13.51506 -13.28528 -13.08235 -12.80911 -12.78030 -12.70401 -12.59080 -12.55986 -12.31022 -12.14410 -11.99456 -11.84234 -11.66987 -11.41666 -11.14666 -11.01711 -10.81734 -10.77809 -10.58808 -10.55315 -10.02327 -8.62703 -7.88007 -5.33744 0.71691 1.37181 1.43037 1.46281 1.46575 1.76084 2.01572 2.29775 2.48685 3.28329 3.49349 3.53789 3.65734 3.77884 3.88496 3.98077 4.09406 4.12664 4.13821 4.25764 4.35120 4.39036 4.49853 4.55703 4.62120 4.68317 4.70719 4.82206 4.89144 4.99679 5.00777 5.06508 5.18379 5.22864 5.30557 5.31394 5.35727 5.47782 5.52359 5.53503 5.60618 5.68695 5.80994 5.96640 6.39753 6.71583 7.12772 7.14638 7.44903 7.88903 8.37531 9.16766 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.013650 B = 0.002936 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.846501 B = 9533.673791 C =11032.010271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.153 3.847 3 H 0.024 0.976 4 C -0.120 4.120 5 C -0.106 4.106 6 C 0.130 3.870 7 H 0.042 0.958 8 N -0.709 5.709 9 C 0.495 3.505 10 O -0.600 6.600 11 C -0.120 4.120 12 C -0.110 4.110 13 C 0.131 3.869 14 N -0.383 5.383 15 C 0.259 3.741 16 N -0.583 5.583 17 C 0.186 3.814 18 N -0.357 5.357 19 C 0.182 3.818 20 N -0.604 5.604 21 C -0.252 4.252 22 H 0.072 0.928 23 C -0.051 4.051 24 N -0.931 5.931 25 Si 0.953 3.047 26 H -0.266 1.266 27 H -0.296 1.296 28 H -0.289 1.289 29 H 0.079 0.921 30 H 0.037 0.963 31 H 0.043 0.957 32 H 0.048 0.952 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.416 0.584 37 H 0.137 0.863 38 H 0.131 0.869 39 H 0.041 0.959 40 H 0.049 0.951 41 H 0.113 0.887 42 H 0.148 0.852 43 H 0.264 0.736 44 H 0.235 0.765 45 H 0.001 0.999 46 H 0.037 0.963 47 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.907 -0.720 11.548 20.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.048 3.952 3 H 0.042 0.958 4 C -0.159 4.159 5 C -0.144 4.144 6 C 0.023 3.977 7 H 0.061 0.939 8 N -0.361 5.361 9 C 0.283 3.717 10 O -0.480 6.480 11 C -0.160 4.160 12 C -0.149 4.149 13 C 0.011 3.989 14 N -0.174 5.174 15 C -0.037 4.037 16 N -0.311 5.311 17 C -0.116 4.116 18 N -0.186 5.186 19 C 0.055 3.945 20 N -0.328 5.328 21 C -0.383 4.383 22 H 0.089 0.911 23 C -0.246 4.246 24 N -0.578 5.578 25 Si 0.782 3.218 26 H -0.192 1.192 27 H -0.222 1.222 28 H -0.216 1.216 29 H 0.098 0.902 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.114 0.886 34 H 0.104 0.896 35 H 0.095 0.905 36 H 0.254 0.746 37 H 0.155 0.845 38 H 0.149 0.851 39 H 0.059 0.941 40 H 0.068 0.932 41 H 0.131 0.869 42 H 0.166 0.834 43 H 0.279 0.721 44 H 0.251 0.749 45 H 0.019 0.981 46 H 0.056 0.944 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 16.124 -1.567 11.364 19.788 hybrid contribution -0.608 -0.278 -1.313 1.473 sum 15.516 -1.845 10.051 18.578 Atomic orbital electron populations 1.21740 0.94936 1.01011 1.01052 1.20804 0.94198 0.93439 0.86733 0.95839 1.21962 0.94946 1.00675 0.98309 1.21631 0.96816 1.00072 0.95866 1.21445 0.80133 0.98601 0.97522 0.93930 1.45906 1.07261 1.27229 1.55705 1.21627 0.92708 0.80391 0.76929 1.90750 1.65757 1.44436 1.47067 1.21583 0.89068 1.00163 1.05155 1.21423 0.95169 0.98002 1.00285 1.22175 0.94966 0.83035 0.98773 1.50764 1.34994 1.07119 1.24507 1.26973 0.92437 0.97537 0.86783 1.70529 1.26791 1.02986 1.30840 1.26496 0.93153 1.02305 0.89675 1.78001 1.24579 0.89616 1.26356 1.20746 0.83652 0.95232 0.94899 1.44321 1.02673 1.65585 1.20270 1.19417 0.95528 1.36627 0.86713 0.91071 1.25753 0.99127 1.00843 0.98879 1.70143 1.25730 1.45558 1.16330 0.85555 0.78976 0.78871 0.78431 1.19156 1.22182 1.21631 0.90207 0.94380 0.93778 0.93331 0.88580 0.89639 0.90545 0.74648 0.84498 0.85078 0.94051 0.93235 0.86885 0.83400 0.72088 0.74901 0.98141 0.94409 0.94648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.71 7.95 71.98 0.57 -4.13 16 2 C 0.15 6.07 3.50 44.97 0.16 6.23 16 3 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 4 C -0.12 -3.68 5.37 30.67 0.16 -3.51 16 5 C -0.11 -2.99 5.35 30.62 0.16 -2.83 16 6 C 0.13 4.92 2.61 45.07 0.12 5.04 16 7 H 0.04 1.95 7.58 -2.39 -0.02 1.93 16 8 N -0.71 -20.56 5.08 -442.17 -2.25 -22.80 16 9 C 0.50 15.81 7.80 87.66 0.68 16.50 16 10 O -0.60 -27.65 15.64 -3.01 -0.05 -27.70 16 11 C -0.12 -2.03 5.70 29.85 0.17 -1.86 16 12 C -0.11 -2.37 4.72 30.59 0.14 -2.22 16 13 C 0.13 1.57 6.55 86.38 0.57 2.13 16 14 N -0.38 -7.44 3.69 -352.07 -1.30 -8.74 16 15 C 0.26 4.32 12.63 180.36 2.28 6.59 16 16 N -0.58 -13.40 11.19 -204.01 -2.28 -15.68 16 17 C 0.19 4.34 13.03 180.77 2.36 6.69 16 18 N -0.36 -9.33 12.57 -61.25 -0.77 -10.10 16 19 C 0.18 9.00 4.86 86.36 0.42 9.42 16 20 N -0.60 -30.70 2.99 -675.24 -2.02 -32.71 16 21 C -0.25 -14.32 8.58 84.03 0.72 -13.60 16 22 H 0.07 3.91 6.23 -2.91 -0.02 3.89 16 23 C -0.05 -2.99 4.94 84.86 0.42 -2.58 16 24 N -0.93 -57.78 11.23 21.65 0.24 -57.54 16 25 Si 0.95 48.21 29.58 68.60 2.03 50.24 16 26 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 27 H -0.30 -15.04 7.11 99.48 0.71 -14.33 16 28 H -0.29 -14.79 7.11 99.48 0.71 -14.08 16 29 H 0.08 2.21 8.14 -2.38 -0.02 2.19 16 30 H 0.04 1.52 7.67 -2.39 -0.02 1.51 16 31 H 0.04 1.65 7.40 -2.38 -0.02 1.64 16 32 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.42 7.93 8.60 -92.71 -0.80 7.13 16 37 H 0.14 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.13 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.04 1.19 8.10 -2.39 -0.02 1.17 16 40 H 0.05 1.42 8.10 -2.39 -0.02 1.40 16 41 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.15 0.47 8.09 -2.39 -0.02 0.45 16 43 H 0.26 1.41 8.06 -2.91 -0.02 1.39 16 44 H 0.23 3.87 8.06 -2.91 -0.02 3.84 16 45 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 46 H 0.04 2.28 6.15 -2.39 -0.01 2.26 16 47 H 0.24 14.91 8.31 -92.71 -0.77 14.14 16 Total: -1.00 -91.28 380.62 2.71 -88.57 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: 0.17 Total: 14.59 kcal Atomic # 6 Polarization: 12.95 SS G_CDS: 8.93 Total: 21.88 kcal Atomic # 7 Polarization: -139.20 SS G_CDS: -8.37 Total: -147.58 kcal Atomic # 8 Polarization: -27.65 SS G_CDS: -0.05 Total: -27.70 kcal Atomic # 14 Polarization: 48.21 SS G_CDS: 2.03 Total: 50.24 kcal Total: -91.28 2.71 -88.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132406450.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.508 kcal (2) G-P(sol) polarization free energy of solvation -91.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds