Wall clock time and date at job start Fri Apr 10 2020 18:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.69797 * 2 1 4 4 C 1.53190 * 109.58621 * 120.34871 * 2 1 3 5 5 C 1.53048 * 109.31082 * 174.42453 * 4 2 1 6 6 C 1.53042 * 109.53834 * 298.63861 * 5 4 2 7 7 H 1.09006 * 109.49496 * 301.37998 * 6 5 4 8 8 N 1.46501 * 109.49607 * 181.31652 * 6 5 4 9 9 C 1.34780 * 119.99397 * 154.99822 * 8 6 5 10 10 O 1.21275 * 120.00609 * 0.02562 * 9 8 6 11 11 C 1.50703 * 119.99255 * 180.02562 * 9 8 6 12 12 C 1.53003 * 109.46763 * 180.02562 * 11 9 8 13 13 C 1.50703 * 109.46763 * 180.02562 * 12 11 9 14 14 C 1.35354 * 126.75101 * 125.00191 * 13 12 11 15 15 N 1.35308 * 106.17446 * 179.97438 * 14 13 12 16 16 C 1.46500 * 125.86650 * 180.02562 * 15 14 13 17 17 N 1.28708 * 108.26374 * 0.25924 * 15 14 13 18 18 N 1.28630 * 110.18237 * 359.56230 * 17 15 14 19 19 C 1.53186 * 109.31228 * 61.36523 * 6 5 4 20 20 N 1.46921 * 109.59083 * 239.64309 * 2 1 3 21 21 C 1.36937 * 120.62883 * 6.62541 * 20 2 1 22 22 H 1.08000 * 120.00036 * 330.16227 * 21 20 2 23 23 C 1.38818 * 120.00162 * 150.16315 * 21 20 2 24 24 N 1.31621 * 119.99571 * 344.48274 * 23 21 20 25 25 Si 1.86800 * 120.00020 * 164.48664 * 23 21 20 26 26 H 1.48493 * 109.47273 * 89.99523 * 25 23 21 27 27 H 1.48497 * 109.46852 * 210.00300 * 25 23 21 28 28 H 1.48505 * 109.47129 * 329.99769 * 25 23 21 29 29 H 1.09000 * 109.47192 * 299.64851 * 1 2 3 30 30 H 1.09002 * 109.47172 * 59.64960 * 1 2 3 31 31 H 1.09006 * 109.47056 * 179.64420 * 1 2 3 32 32 H 1.08994 * 109.49495 * 54.47604 * 4 2 1 33 33 H 1.09000 * 109.49993 * 294.37391 * 4 2 1 34 34 H 1.09001 * 109.45789 * 178.62003 * 5 4 2 35 35 H 1.08999 * 109.44668 * 58.65146 * 5 4 2 36 36 H 0.96996 * 120.00190 * 335.00343 * 8 6 5 37 37 H 1.09002 * 109.47353 * 60.00015 * 11 9 8 38 38 H 1.09000 * 109.47287 * 299.99743 * 11 9 8 39 39 H 1.08996 * 109.47700 * 60.00082 * 12 11 9 40 40 H 1.09000 * 109.46780 * 299.99772 * 12 11 9 41 41 H 1.08005 * 126.90976 * 359.97438 * 14 13 12 42 42 H 1.09003 * 109.47492 * 89.99621 * 16 15 14 43 43 H 1.09002 * 109.47209 * 209.99870 * 16 15 14 44 44 H 1.09004 * 109.47021 * 329.99864 * 16 15 14 45 45 H 1.08995 * 109.59044 * 65.15321 * 19 6 5 46 46 H 1.09006 * 109.58774 * 185.58170 * 19 6 5 47 47 H 0.96998 * 119.99014 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0435 -0.7292 1.2455 5 6 3.5675 -0.8478 1.1702 6 6 3.9570 -1.6655 -0.0634 7 1 3.4989 -2.6529 -0.0048 8 7 5.4143 -1.8051 -0.1174 9 6 5.9677 -2.8480 -0.7675 10 8 5.2594 -3.6706 -1.3081 11 6 7.4669 -2.9918 -0.8225 12 6 7.8297 -4.2495 -1.6147 13 6 9.3289 -4.3936 -1.6692 14 6 10.0536 -5.4696 -1.2830 15 7 11.3491 -5.1532 -1.5115 16 6 12.5031 -6.0158 -1.2462 17 7 11.3938 -3.9622 -1.9974 18 7 10.2051 -3.4836 -2.1092 19 6 3.4651 -0.9469 -1.3236 20 7 2.0226 -0.6995 -1.1944 21 6 1.1538 -1.1127 -2.1689 22 1 0.1398 -1.3797 -1.9105 23 6 1.5765 -1.1885 -3.4890 24 7 2.6873 -0.5876 -3.8598 25 14 0.5689 -2.1432 -4.7390 26 1 -0.4248 -1.2376 -5.3694 27 1 1.4692 -2.6943 -5.7835 28 1 -0.1388 -3.2570 -4.0577 29 1 -0.3633 0.5084 0.8931 30 1 -0.3634 0.5193 -0.8868 31 1 -0.3633 -1.0277 -0.0064 32 1 1.6030 -1.7251 1.2914 33 1 1.7660 -0.1666 2.1369 34 1 3.9378 -1.3446 2.0670 35 1 4.0059 0.1477 1.0992 36 1 5.9809 -1.1470 0.3148 37 1 7.8615 -3.0734 0.1903 38 1 7.8980 -2.1181 -1.3112 39 1 7.4352 -4.1675 -2.6274 40 1 7.3986 -5.1234 -1.1264 41 1 9.6740 -6.3947 -0.8747 42 1 12.7169 -6.6185 -2.1289 43 1 13.3702 -5.3997 -1.0081 44 1 12.2808 -6.6712 -0.4040 45 1 3.9903 0.0021 -1.4316 46 1 3.6519 -1.5717 -2.1971 47 1 2.9824 -0.6403 -4.7823 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132545697.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:06 Heat of formation + Delta-G solvation = 47.586538 kcal Electronic energy + Delta-G solvation = -27168.305621 eV Core-core repulsion = 23387.578859 eV Total energy + Delta-G solvation = -3780.726762 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.20944 -40.90562 -39.24132 -36.20432 -35.85800 -34.62572 -34.42396 -32.34696 -31.74561 -30.95560 -28.70994 -27.79165 -26.94676 -25.60900 -23.96172 -23.00511 -22.42959 -21.77916 -21.26723 -20.70454 -18.36093 -18.24157 -17.78936 -17.49589 -17.26455 -16.69832 -16.43295 -15.81265 -15.64135 -15.44518 -15.11400 -15.03251 -14.60290 -14.50545 -14.09279 -14.05698 -13.92704 -13.61197 -13.35526 -13.13771 -13.03582 -12.75842 -12.67797 -12.58403 -12.52594 -12.28362 -12.26380 -12.10652 -11.96270 -11.64682 -11.64034 -11.38102 -11.11207 -10.98859 -10.73551 -10.52034 -10.11902 -9.98625 -8.59542 -7.83615 -5.30108 0.65653 1.40996 1.45430 1.47562 1.53058 1.60056 1.76895 2.32622 2.52679 3.32242 3.36973 3.67245 3.76469 3.87874 4.01977 4.05801 4.12154 4.16806 4.26967 4.32206 4.35799 4.41523 4.44345 4.63353 4.65781 4.68652 4.73170 4.79102 4.84886 4.92008 5.02340 5.03781 5.09351 5.14808 5.20983 5.25020 5.33834 5.38351 5.55329 5.56684 5.63781 5.71324 5.72135 5.84470 6.43212 6.71573 7.17716 7.43286 7.51486 7.92148 8.41741 9.21434 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.015969 B = 0.002799 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.931566 B =10000.823647 C =11245.615561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.152 3.848 3 H 0.019 0.981 4 C -0.118 4.118 5 C -0.107 4.107 6 C 0.132 3.868 7 H 0.052 0.948 8 N -0.712 5.712 9 C 0.506 3.494 10 O -0.587 6.587 11 C -0.117 4.117 12 C -0.011 4.011 13 C -0.036 4.036 14 C -0.028 4.028 15 N -0.288 5.288 16 C 0.069 3.931 17 N -0.123 5.123 18 N -0.307 5.307 19 C 0.180 3.820 20 N -0.603 5.603 21 C -0.250 4.250 22 H 0.074 0.926 23 C -0.056 4.056 24 N -0.934 5.934 25 Si 0.957 3.043 26 H -0.279 1.279 27 H -0.300 1.300 28 H -0.270 1.270 29 H 0.079 0.921 30 H 0.036 0.964 31 H 0.046 0.954 32 H 0.053 0.947 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.070 0.930 36 H 0.412 0.588 37 H 0.122 0.878 38 H 0.096 0.904 39 H 0.059 0.941 40 H 0.102 0.898 41 H 0.235 0.765 42 H 0.106 0.894 43 H 0.106 0.894 44 H 0.133 0.867 45 H -0.006 1.006 46 H 0.040 0.960 47 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.159 -10.296 14.956 24.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.047 3.953 3 H 0.037 0.963 4 C -0.157 4.157 5 C -0.145 4.145 6 C 0.025 3.975 7 H 0.071 0.929 8 N -0.364 5.364 9 C 0.293 3.707 10 O -0.467 6.467 11 C -0.157 4.157 12 C -0.051 4.051 13 C -0.175 4.175 14 C -0.180 4.180 15 N -0.082 5.082 16 C -0.069 4.069 17 N -0.102 5.102 18 N -0.173 5.173 19 C 0.052 3.948 20 N -0.328 5.328 21 C -0.380 4.380 22 H 0.092 0.908 23 C -0.251 4.251 24 N -0.581 5.581 25 Si 0.786 3.214 26 H -0.206 1.206 27 H -0.227 1.227 28 H -0.195 1.195 29 H 0.097 0.903 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.113 0.887 34 H 0.105 0.895 35 H 0.089 0.911 36 H 0.249 0.751 37 H 0.140 0.860 38 H 0.114 0.886 39 H 0.078 0.922 40 H 0.120 0.880 41 H 0.251 0.749 42 H 0.124 0.876 43 H 0.125 0.875 44 H 0.151 0.849 45 H 0.012 0.988 46 H 0.059 0.941 47 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 17.686 -9.753 13.908 24.522 hybrid contribution -0.719 -0.756 -1.052 1.482 sum 16.967 -10.509 12.856 23.740 Atomic orbital electron populations 1.21729 0.94739 1.01158 1.01002 1.20816 0.94311 0.93309 0.86873 0.96305 1.21947 0.94699 1.00866 0.98181 1.21646 0.96985 0.99899 0.96000 1.21465 0.79711 0.99001 0.97307 0.92933 1.45954 1.07483 1.27255 1.55682 1.21288 0.91806 0.80600 0.76962 1.90710 1.65254 1.44179 1.46527 1.21504 0.89457 1.00555 1.04177 1.19485 0.85876 0.98762 1.00949 1.22124 0.97515 0.92775 1.05136 1.23997 0.83085 1.03582 1.07321 1.47682 1.09207 1.11870 1.39468 1.22753 0.84774 0.93662 1.05762 1.78217 1.17819 0.96036 1.18149 1.75011 0.95758 1.27451 1.19054 1.20763 0.83704 0.95124 0.95160 1.44328 1.02571 1.65669 1.20201 1.19455 0.95499 1.36474 0.86576 0.90803 1.25840 0.99131 1.01000 0.99084 1.70175 1.25887 1.45741 1.16259 0.85418 0.77923 0.79038 0.79031 1.20572 1.22717 1.19537 0.90255 0.94446 0.93476 0.92830 0.88672 0.89482 0.91138 0.75119 0.86001 0.88557 0.92225 0.87983 0.74902 0.87609 0.87522 0.84895 0.98790 0.94131 0.94734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.72 7.95 71.98 0.57 -4.14 16 2 C 0.15 6.17 3.50 44.97 0.16 6.33 16 3 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 4 C -0.12 -3.69 5.37 30.67 0.16 -3.53 16 5 C -0.11 -3.20 5.35 30.62 0.16 -3.04 16 6 C 0.13 5.17 2.60 45.07 0.12 5.29 16 7 H 0.05 2.39 7.58 -2.38 -0.02 2.37 16 8 N -0.71 -23.05 5.08 -442.16 -2.25 -25.29 16 9 C 0.51 17.61 7.80 87.66 0.68 18.30 16 10 O -0.59 -26.61 15.64 -3.02 -0.05 -26.66 16 11 C -0.12 -2.96 5.68 29.85 0.17 -2.79 16 12 C -0.01 -0.28 5.08 29.85 0.15 -0.13 16 13 C -0.04 -0.87 6.50 41.60 0.27 -0.60 16 14 C -0.03 -0.43 11.54 83.49 0.96 0.53 16 15 N -0.29 -4.59 3.74 -369.22 -1.38 -5.97 16 16 C 0.07 0.25 11.39 127.77 1.46 1.71 16 17 N -0.12 -3.14 13.16 37.02 0.49 -2.66 16 18 N -0.31 -9.06 12.40 -48.60 -0.60 -9.67 16 19 C 0.18 9.23 4.86 86.36 0.42 9.65 16 20 N -0.60 -31.24 2.99 -675.25 -2.02 -33.26 16 21 C -0.25 -14.26 8.58 84.03 0.72 -13.54 16 22 H 0.07 4.05 6.23 -2.91 -0.02 4.04 16 23 C -0.06 -3.33 4.94 84.86 0.42 -2.91 16 24 N -0.93 -59.53 11.23 21.65 0.24 -59.29 16 25 Si 0.96 48.49 29.58 68.60 2.03 50.52 16 26 H -0.28 -13.58 7.11 99.48 0.71 -12.88 16 27 H -0.30 -15.59 7.11 99.48 0.71 -14.88 16 28 H -0.27 -13.14 7.11 99.48 0.71 -12.43 16 29 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.04 1.51 7.67 -2.39 -0.02 1.50 16 31 H 0.05 1.76 7.40 -2.38 -0.02 1.75 16 32 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.41 9.99 8.60 -92.71 -0.80 9.19 16 37 H 0.12 2.25 8.14 -2.39 -0.02 2.23 16 38 H 0.10 2.55 8.14 -2.39 -0.02 2.53 16 39 H 0.06 1.89 8.10 -2.39 -0.02 1.87 16 40 H 0.10 2.26 8.08 -2.39 -0.02 2.24 16 41 H 0.23 1.30 8.06 -2.91 -0.02 1.27 16 42 H 0.11 0.12 8.14 -2.39 -0.02 0.10 16 43 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 44 H 0.13 -0.41 8.14 -2.38 -0.02 -0.43 16 45 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 46 H 0.04 2.51 6.15 -2.38 -0.01 2.49 16 47 H 0.24 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -87.81 380.16 3.07 -84.74 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: 0.17 Total: 16.40 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: 6.43 Total: 11.13 kcal Atomic # 7 Polarization: -130.62 SS G_CDS: -5.52 Total: -136.13 kcal Atomic # 8 Polarization: -26.61 SS G_CDS: -0.05 Total: -26.66 kcal Atomic # 14 Polarization: 48.49 SS G_CDS: 2.03 Total: 50.52 kcal Total: -87.81 3.07 -84.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132545697.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.330 kcal (2) G-P(sol) polarization free energy of solvation -87.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds