Wall clock time and date at job start Fri Apr 10 2020 18:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36601 * 126.57764 * 2 1 4 4 C 1.47524 * 125.77114 * 359.97438 * 3 2 1 5 5 O 1.21600 * 119.99677 * 353.90803 * 4 3 2 6 6 N 1.34774 * 119.99912 * 173.90551 * 4 3 2 7 7 C 1.46926 * 120.63096 * 354.37975 * 6 4 3 8 8 C 1.53188 * 108.77643 * 126.36599 * 7 6 4 9 9 C 1.53041 * 109.31403 * 54.63395 * 8 7 6 10 10 H 1.08996 * 109.46262 * 178.61443 * 9 8 7 11 11 C 1.53003 * 109.44861 * 58.64682 * 9 8 7 12 12 C 1.53042 * 109.53664 * 298.63715 * 9 8 7 13 13 H 1.09001 * 109.49206 * 301.40588 * 12 9 8 14 14 C 1.52999 * 109.49636 * 181.35188 * 12 9 8 15 15 N 1.46499 * 109.47104 * 175.06211 * 14 12 9 16 16 C 1.36936 * 119.99958 * 179.97438 * 15 14 12 17 17 H 1.08004 * 120.00414 * 359.97438 * 16 15 14 18 18 C 1.38815 * 119.99996 * 179.97438 * 16 15 14 19 19 N 1.31617 * 119.99890 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00176 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46937 * 89.99923 * 20 18 16 22 22 H 1.48492 * 109.47638 * 210.00217 * 20 18 16 23 23 H 1.48504 * 109.47196 * 330.00569 * 20 18 16 24 24 C 1.46922 * 120.62967 * 174.35037 * 6 4 3 25 25 N 1.34403 * 108.45479 * 180.24407 * 3 2 1 26 26 N 1.28756 * 109.52261 * 359.59144 * 25 3 2 27 27 N 1.34812 * 126.57997 * 180.02562 * 2 1 3 28 28 C 1.46493 * 126.59555 * 359.97438 * 27 2 1 29 29 H 1.08999 * 109.47512 * 89.99951 * 1 2 3 30 30 H 1.09000 * 109.46997 * 209.99561 * 1 2 3 31 31 H 1.08998 * 109.47566 * 329.99586 * 1 2 3 32 32 H 1.08997 * 109.58713 * 6.57477 * 7 6 4 33 33 H 1.09002 * 109.70057 * 246.22278 * 7 6 4 34 34 H 1.08998 * 109.49887 * 294.68202 * 8 7 6 35 35 H 1.09002 * 109.49437 * 174.58521 * 8 7 6 36 36 H 1.09002 * 109.47290 * 299.93746 * 11 9 8 37 37 H 1.08993 * 109.47204 * 59.93762 * 11 9 8 38 38 H 1.09003 * 109.47277 * 179.97438 * 11 9 8 39 39 H 1.09003 * 109.47027 * 295.05999 * 14 12 9 40 40 H 1.08996 * 109.47834 * 55.05870 * 14 12 9 41 41 H 0.96995 * 119.99905 * 359.97438 * 15 14 12 42 42 H 0.97005 * 120.00019 * 179.97438 * 19 18 16 43 43 H 1.08999 * 109.58818 * 113.84178 * 24 6 4 44 44 H 1.09000 * 109.58865 * 353.42242 * 24 6 4 45 45 H 1.09007 * 109.47306 * 89.99963 * 28 27 2 46 46 H 1.09003 * 109.47474 * 209.99803 * 28 27 2 47 47 H 1.08999 * 109.47588 * 330.00193 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0970 0.0000 4 6 1.8737 2.5028 -0.0005 5 8 0.6915 2.7645 -0.1128 6 7 2.7753 3.4968 0.1234 7 6 4.1899 3.1964 0.3828 8 6 5.0452 3.8968 -0.6777 9 6 4.7120 5.3905 -0.6910 10 1 5.3368 5.8954 -1.4277 11 6 4.9766 5.9838 0.6942 12 6 3.2380 5.5828 -1.0550 13 1 3.0433 5.1383 -2.0310 14 6 2.9143 7.0775 -1.1010 15 7 1.5369 7.2648 -1.5635 16 6 1.0210 8.5274 -1.6846 17 1 1.6294 9.3853 -1.4388 18 6 -0.2840 8.7049 -2.1233 19 7 -1.0253 7.6596 -2.4233 20 14 -0.9880 10.4273 -2.2879 21 1 -0.7216 10.9424 -3.6550 22 1 -2.4533 10.3881 -2.0505 23 1 -0.3485 11.3210 -1.2890 24 6 2.3623 4.9015 0.0012 25 7 3.5984 0.6789 -0.0054 26 7 3.6298 -0.6083 -0.0002 27 7 2.3104 -1.0826 -0.0005 28 6 1.8864 -2.4848 -0.0006 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5139 32 1 4.3506 2.1197 0.3291 33 1 4.4669 3.5582 1.3730 34 1 4.8334 3.4681 -1.6572 35 1 6.1006 3.7616 -0.4413 36 1 4.3515 5.4794 1.4310 37 1 6.0263 5.8469 0.9537 38 1 4.7399 7.0478 0.6850 39 1 3.0238 7.5038 -0.1038 40 1 3.5988 7.5767 -1.7867 41 1 0.9903 6.4944 -1.7839 42 1 -1.9374 7.7836 -2.7296 43 1 2.4884 5.4042 0.9601 44 1 1.3171 4.9498 -0.3043 45 1 1.7808 -2.8324 -1.0283 46 1 2.6333 -3.0903 0.5128 47 1 0.9295 -2.5752 0.5135 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132725957.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:21 Heat of formation + Delta-G solvation = 57.395730 kcal Electronic energy + Delta-G solvation = -28115.362070 eV Core-core repulsion = 24335.060666 eV Total energy + Delta-G solvation = -3780.301404 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.41786 -41.23233 -39.20905 -36.70738 -35.98437 -34.74508 -33.54282 -33.28991 -31.49860 -29.47217 -28.66358 -28.35213 -27.09382 -25.99838 -24.88683 -23.94327 -22.56784 -22.22986 -21.06421 -19.66919 -18.91940 -18.40413 -17.47675 -17.22542 -16.97197 -16.75276 -16.17647 -16.04124 -15.74409 -15.43422 -15.20272 -15.06507 -14.58999 -14.47234 -14.33038 -14.21742 -14.02616 -13.90813 -13.74518 -13.49511 -13.20759 -13.02126 -12.85092 -12.68382 -12.64530 -12.44952 -12.18292 -12.10369 -11.88731 -11.83582 -11.63090 -11.33883 -11.21311 -11.15013 -10.91304 -10.68158 -10.27632 -9.53242 -8.97957 -7.91964 -5.22157 0.07153 0.51983 1.08555 1.46663 1.49602 1.58047 1.94050 2.15602 2.57278 3.06524 3.34573 3.40647 3.58766 3.65064 3.72772 3.87379 3.89799 4.10289 4.15702 4.29115 4.31815 4.34893 4.45513 4.49547 4.58256 4.60366 4.65195 4.67487 4.77172 4.81162 4.82813 4.89996 4.97326 5.02250 5.12092 5.19258 5.24575 5.28754 5.32711 5.42742 5.46872 5.50816 5.58868 5.70573 6.28634 6.35689 6.81210 7.09780 7.34141 8.10294 8.33369 9.31576 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.015645 B = 0.003373 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.258447 B = 8299.538063 C = 9822.789230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.131 3.869 3 C -0.125 4.125 4 C 0.590 3.410 5 O -0.568 6.568 6 N -0.593 5.593 7 C 0.067 3.933 8 C -0.116 4.116 9 C -0.080 4.080 10 H 0.080 0.920 11 C -0.147 4.147 12 C -0.089 4.089 13 H 0.049 0.951 14 C 0.162 3.838 15 N -0.748 5.748 16 C -0.245 4.245 17 H 0.078 0.922 18 C -0.079 4.079 19 N -0.971 5.971 20 Si 0.976 3.024 21 H -0.286 1.286 22 H -0.296 1.296 23 H -0.267 1.267 24 C 0.131 3.869 25 N -0.214 5.214 26 N -0.086 5.086 27 N -0.349 5.349 28 C 0.072 3.928 29 H 0.099 0.901 30 H 0.118 0.882 31 H 0.085 0.915 32 H 0.141 0.859 33 H 0.077 0.923 34 H 0.051 0.949 35 H 0.103 0.897 36 H 0.052 0.948 37 H 0.078 0.922 38 H 0.052 0.948 39 H 0.032 0.968 40 H 0.024 0.976 41 H 0.371 0.629 42 H 0.250 0.750 43 H 0.074 0.926 44 H 0.057 0.943 45 H 0.108 0.892 46 H 0.116 0.884 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.080 -23.092 8.331 26.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.008 4.008 3 C -0.264 4.264 4 C 0.377 3.623 5 O -0.447 6.447 6 N -0.323 5.323 7 C -0.056 4.056 8 C -0.154 4.154 9 C -0.099 4.099 10 H 0.099 0.901 11 C -0.204 4.204 12 C -0.109 4.109 13 H 0.067 0.933 14 C 0.035 3.965 15 N -0.390 5.390 16 C -0.377 4.377 17 H 0.096 0.904 18 C -0.271 4.271 19 N -0.621 5.621 20 Si 0.805 3.195 21 H -0.214 1.214 22 H -0.223 1.223 23 H -0.192 1.192 24 C 0.009 3.991 25 N -0.086 5.086 26 N -0.064 5.064 27 N -0.135 5.135 28 C -0.067 4.067 29 H 0.118 0.882 30 H 0.136 0.864 31 H 0.104 0.896 32 H 0.157 0.843 33 H 0.095 0.905 34 H 0.070 0.930 35 H 0.122 0.878 36 H 0.071 0.929 37 H 0.097 0.903 38 H 0.071 0.929 39 H 0.050 0.950 40 H 0.042 0.958 41 H 0.203 0.797 42 H 0.059 0.941 43 H 0.092 0.908 44 H 0.075 0.925 45 H 0.126 0.874 46 H 0.134 0.866 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 11.978 -23.256 8.304 27.446 hybrid contribution -1.900 1.064 -0.547 2.245 sum 10.079 -22.192 7.757 25.578 Atomic orbital electron populations 1.20780 0.82746 1.06075 1.05464 1.22210 0.97268 0.85895 0.95394 1.21083 0.89829 0.94883 1.20644 1.17230 0.85072 0.83640 0.76358 1.90799 1.17427 1.83903 1.52598 1.47974 1.09791 1.05363 1.69215 1.22967 0.77710 1.05883 0.99004 1.21839 1.00895 0.93885 0.98740 1.21083 0.93146 0.96699 0.98974 0.90134 1.21940 1.02410 1.00620 0.95464 1.21531 0.96688 0.94987 0.97688 0.93266 1.20839 0.85329 0.93487 0.96842 1.42671 1.11150 1.05008 1.80193 1.19661 0.95881 0.86231 1.35896 0.90380 1.25640 0.97449 1.01066 1.02929 1.69866 1.08947 1.30176 1.53147 0.85096 0.76967 0.79515 0.77912 1.21356 1.22265 1.19181 1.21446 0.98709 0.79845 0.99112 1.73987 1.18656 1.04213 1.11707 1.81866 0.97908 1.03360 1.23316 1.50532 1.05066 1.09225 1.48656 1.22754 1.04298 0.72979 1.06655 0.88222 0.86384 0.89587 0.84269 0.90506 0.93009 0.87825 0.92868 0.90344 0.92901 0.95037 0.95815 0.79748 0.94110 0.90808 0.92455 0.87416 0.86595 0.85534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.51 9.51 71.24 0.68 -0.83 16 2 C 0.13 2.83 7.02 41.72 0.29 3.13 16 3 C -0.13 -3.60 6.75 40.82 0.28 -3.33 16 4 C 0.59 20.93 7.68 86.69 0.67 21.60 16 5 O -0.57 -23.84 14.24 -4.03 -0.06 -23.89 16 6 N -0.59 -19.66 2.97 -822.70 -2.45 -22.11 16 7 C 0.07 1.72 5.85 86.36 0.51 2.22 16 8 C -0.12 -2.72 5.62 30.67 0.17 -2.54 16 9 C -0.08 -2.11 2.71 -10.77 -0.03 -2.14 16 10 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 11 C -0.15 -3.41 8.11 71.98 0.58 -2.83 16 12 C -0.09 -3.20 2.15 -10.72 -0.02 -3.22 16 13 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 14 C 0.16 6.83 5.19 86.38 0.45 7.27 16 15 N -0.75 -40.74 5.38 -343.45 -1.85 -42.58 16 16 C -0.24 -14.37 9.99 84.03 0.84 -13.53 16 17 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 18 C -0.08 -4.75 5.50 84.86 0.47 -4.29 16 19 N -0.97 -62.93 13.06 21.65 0.28 -62.65 16 20 Si 0.98 48.04 29.55 68.60 2.03 50.07 16 21 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 22 H -0.30 -14.64 7.11 99.48 0.71 -13.93 16 23 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 24 C 0.13 4.95 5.04 86.36 0.43 5.39 16 25 N -0.21 -5.77 8.69 -49.99 -0.43 -6.21 16 26 N -0.09 -2.00 13.78 37.02 0.51 -1.49 16 27 N -0.35 -5.89 4.03 -355.10 -1.43 -7.32 16 28 C 0.07 0.31 11.33 127.77 1.45 1.76 16 29 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.12 0.82 7.18 -2.39 -0.02 0.80 16 31 H 0.09 1.96 6.58 -2.39 -0.02 1.95 16 32 H 0.14 3.62 3.64 -95.45 -0.35 3.28 16 33 H 0.08 1.76 6.70 -2.39 -0.02 1.75 16 34 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.05 1.28 4.98 -2.39 -0.01 1.27 16 37 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.05 1.33 6.57 -2.39 -0.02 1.31 16 39 H 0.03 1.30 6.73 -2.39 -0.02 1.28 16 40 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.37 22.05 6.90 -92.71 -0.64 21.41 16 42 H 0.25 15.67 8.31 -92.70 -0.77 14.90 16 43 H 0.07 2.65 6.69 -2.39 -0.02 2.64 16 44 H 0.06 2.69 6.25 -2.39 -0.01 2.68 16 45 H 0.11 0.17 8.14 -2.38 -0.02 0.15 16 46 H 0.12 0.22 8.14 -2.39 -0.02 0.20 16 47 H 0.13 -0.16 7.16 -2.39 -0.02 -0.17 16 Total: -1.00 -80.79 364.28 3.39 -77.40 By element: Atomic # 1 Polarization: 30.11 SS G_CDS: 0.02 Total: 30.13 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: 6.76 Total: 8.65 kcal Atomic # 7 Polarization: -136.99 SS G_CDS: -5.37 Total: -142.36 kcal Atomic # 8 Polarization: -23.84 SS G_CDS: -0.06 Total: -23.89 kcal Atomic # 14 Polarization: 48.04 SS G_CDS: 2.03 Total: 50.07 kcal Total: -80.79 3.39 -77.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132725957.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.794 kcal (2) G-P(sol) polarization free energy of solvation -80.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds