Wall clock time and date at job start Fri Apr 10 2020 18:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.44559 * 2 1 4 4 C 1.53040 * 109.45888 * 240.03598 * 2 1 3 5 5 C 1.53188 * 109.31221 * 301.34418 * 4 2 1 6 6 N 1.46921 * 108.77702 * 305.36511 * 5 4 2 7 7 C 1.34780 * 120.63184 * 233.63135 * 6 5 4 8 8 O 1.21284 * 119.99819 * 179.97438 * 7 6 5 9 9 C 1.50701 * 119.99839 * 359.97438 * 7 6 5 10 10 C 1.53003 * 109.46963 * 179.97438 * 9 7 6 11 11 C 1.50700 * 109.46969 * 179.97438 * 10 9 7 12 12 N 1.33237 * 125.53268 * 269.69386 * 11 10 9 13 13 C 1.30825 * 109.83091 * 179.85521 * 12 11 10 14 14 N 1.34432 * 108.07953 * 0.40650 * 13 12 11 15 15 H 0.96990 * 126.82441 * 179.78520 * 14 13 12 16 16 N 1.30709 * 125.52046 * 90.00677 * 11 10 9 17 17 C 1.46923 * 118.73736 * 53.60751 * 6 5 4 18 18 C 1.53041 * 109.45902 * 119.96895 * 2 1 3 19 19 H 1.09001 * 109.51934 * 178.62684 * 18 2 1 20 20 C 1.53000 * 109.49533 * 298.70150 * 18 2 1 21 21 N 1.46499 * 109.46840 * 184.83838 * 20 18 2 22 22 C 1.36936 * 120.00002 * 180.02562 * 21 20 18 23 23 H 1.08004 * 120.00140 * 0.02562 * 22 21 20 24 24 C 1.38811 * 120.00367 * 180.02562 * 22 21 20 25 25 N 1.31619 * 119.99972 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00444 * 180.02562 * 24 22 21 27 27 H 1.48494 * 109.47203 * 89.99650 * 26 24 22 28 28 H 1.48501 * 109.47104 * 209.99764 * 26 24 22 29 29 H 1.48504 * 109.46767 * 329.99904 * 26 24 22 30 30 H 1.08996 * 109.47019 * 300.03089 * 1 2 3 31 31 H 1.08997 * 109.47177 * 60.03452 * 1 2 3 32 32 H 1.09001 * 109.47065 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.49735 * 181.39075 * 4 2 1 34 34 H 1.09004 * 109.49932 * 61.29619 * 4 2 1 35 35 H 1.09008 * 109.58479 * 185.57747 * 5 4 2 36 36 H 1.08996 * 109.70643 * 65.22835 * 5 4 2 37 37 H 1.08991 * 109.46929 * 299.99653 * 9 7 6 38 38 H 1.08993 * 109.47249 * 60.00019 * 9 7 6 39 39 H 1.08997 * 109.47343 * 300.00260 * 10 9 7 40 40 H 1.09006 * 109.47044 * 59.99896 * 10 9 7 41 41 H 1.08003 * 125.96158 * 180.19123 * 13 12 11 42 42 H 1.09006 * 109.58550 * 186.60523 * 17 6 5 43 43 H 1.08996 * 109.58373 * 66.18439 * 17 6 5 44 44 H 1.09002 * 109.47398 * 304.84165 * 20 18 2 45 45 H 1.09001 * 109.47194 * 64.84345 * 20 18 2 46 46 H 0.97000 * 120.00420 * 0.02562 * 21 20 18 47 47 H 0.96996 * 120.00586 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0398 -0.7207 -1.2501 5 6 1.4995 -2.1541 -1.2643 6 7 1.8625 -2.8088 -0.0001 7 6 2.5164 -3.9874 -0.0002 8 8 2.8108 -4.5175 1.0502 9 6 2.8817 -4.6464 -1.3053 10 6 3.6121 -5.9614 -1.0258 11 6 3.9768 -6.6207 -2.3309 12 7 3.2187 -7.4901 -2.9976 13 6 3.8309 -7.8655 -4.0912 14 7 5.0186 -7.2377 -4.1408 15 1 5.6917 -7.3211 -4.8342 16 7 5.0907 -6.4366 -2.9895 17 6 1.4996 -2.1541 1.2641 18 6 2.0398 -0.7208 1.2501 19 1 3.1296 -0.7428 1.2388 20 6 1.5569 0.0194 2.4990 21 7 2.1393 -0.6023 3.6908 22 6 1.8473 -0.1068 4.9335 23 1 1.1874 0.7421 5.0351 24 6 2.3995 -0.6955 6.0629 25 7 3.2034 -1.7303 5.9392 26 14 2.0007 -0.0200 7.7582 27 1 0.7972 -0.7055 8.2936 28 1 3.1505 -0.2558 8.6680 29 1 1.7375 1.4382 7.6606 30 1 -0.3633 0.5143 0.8897 31 1 -0.3633 0.5133 -0.8903 32 1 -0.3633 -1.0277 0.0005 33 1 3.1295 -0.7427 -1.2384 34 1 1.6957 -0.1934 -2.1399 35 1 1.9382 -2.7017 -2.0986 36 1 0.4147 -2.1369 -1.3687 37 1 1.9756 -4.8479 -1.8766 38 1 3.5320 -3.9844 -1.8771 39 1 4.5182 -5.7595 -0.4546 40 1 2.9621 -6.6236 -0.4537 41 1 3.4502 -8.5612 -4.8243 42 1 1.9383 -2.7018 2.0983 43 1 0.4147 -2.1348 1.3672 44 1 1.8666 1.0631 2.4454 45 1 0.4697 -0.0345 2.5556 46 1 2.7317 -1.3650 3.5997 47 1 3.5890 -2.1420 6.7283 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132754304.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:31 Heat of formation + Delta-G solvation = 26.607265 kcal Electronic energy + Delta-G solvation = -27248.733575 eV Core-core repulsion = 23467.097083 eV Total energy + Delta-G solvation = -3781.636492 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.06717 -41.47272 -39.37124 -36.62005 -35.34420 -34.82715 -33.47571 -32.98215 -31.83733 -31.23292 -28.71718 -27.73779 -26.29458 -25.09241 -24.83589 -23.59927 -22.54970 -21.33593 -20.66473 -19.38139 -19.22390 -18.89216 -18.10900 -17.07602 -16.83663 -16.76606 -16.34969 -16.12519 -15.91321 -15.67166 -15.33613 -15.04919 -14.87692 -14.47941 -14.30221 -13.98595 -13.79701 -13.72424 -13.36769 -13.08961 -13.03551 -12.84604 -12.78828 -12.61820 -12.42519 -12.21146 -12.10880 -11.98651 -11.89738 -11.69991 -11.34767 -11.20352 -11.08307 -11.04700 -10.92443 -10.81966 -10.62105 -9.54403 -8.99926 -7.93836 -5.24391 0.65948 1.44782 1.48219 1.56537 1.63383 1.77362 1.87047 2.10269 2.55674 3.14395 3.38769 3.57110 3.69354 3.74041 3.85261 3.88372 4.00011 4.11933 4.14376 4.24879 4.30925 4.34079 4.41282 4.52244 4.57838 4.60805 4.75380 4.81005 4.86270 4.89338 4.94612 4.97191 5.02391 5.12660 5.21125 5.26215 5.28228 5.32787 5.36174 5.43446 5.48827 5.57174 5.63516 6.26625 6.29377 6.46751 7.12346 7.20661 7.31845 8.08970 8.31002 9.29681 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.015378 B = 0.002743 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.382884 B =10207.163420 C =11638.275215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.080 4.080 3 H 0.078 0.922 4 C -0.123 4.123 5 C 0.099 3.901 6 N -0.607 5.607 7 C 0.504 3.496 8 O -0.589 6.589 9 C -0.109 4.109 10 C -0.011 4.011 11 C 0.224 3.776 12 N -0.578 5.578 13 C 0.278 3.722 14 N -0.475 5.475 15 H 0.458 0.542 16 N -0.344 5.344 17 C 0.129 3.871 18 C -0.090 4.090 19 H 0.048 0.952 20 C 0.159 3.841 21 N -0.748 5.748 22 C -0.245 4.245 23 H 0.079 0.921 24 C -0.081 4.081 25 N -0.972 5.972 26 Si 0.978 3.022 27 H -0.286 1.286 28 H -0.296 1.296 29 H -0.265 1.265 30 H 0.046 0.954 31 H 0.080 0.920 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.111 0.889 35 H 0.109 0.891 36 H 0.090 0.910 37 H 0.121 0.879 38 H 0.113 0.887 39 H 0.077 0.923 40 H 0.086 0.914 41 H 0.275 0.725 42 H 0.047 0.953 43 H 0.072 0.928 44 H 0.022 0.978 45 H 0.030 0.970 46 H 0.370 0.630 47 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.596 -6.540 -31.347 32.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.099 4.099 3 H 0.096 0.904 4 C -0.161 4.161 5 C -0.022 4.022 6 N -0.339 5.339 7 C 0.294 3.706 8 O -0.470 6.470 9 C -0.150 4.150 10 C -0.051 4.051 11 C -0.058 4.058 12 N -0.307 5.307 13 C -0.019 4.019 14 N -0.195 5.195 15 H 0.307 0.693 16 N -0.175 5.175 17 C 0.006 3.994 18 C -0.109 4.109 19 H 0.067 0.933 20 C 0.033 3.967 21 N -0.391 5.391 22 C -0.377 4.377 23 H 0.097 0.903 24 C -0.273 4.273 25 N -0.623 5.623 26 Si 0.806 3.194 27 H -0.213 1.213 28 H -0.223 1.223 29 H -0.190 1.190 30 H 0.065 0.935 31 H 0.099 0.901 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.129 0.871 35 H 0.127 0.873 36 H 0.108 0.892 37 H 0.139 0.861 38 H 0.131 0.869 39 H 0.096 0.904 40 H 0.104 0.896 41 H 0.290 0.710 42 H 0.066 0.934 43 H 0.090 0.910 44 H 0.040 0.960 45 H 0.048 0.952 46 H 0.202 0.798 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -2.303 -6.320 -30.343 31.079 hybrid contribution 0.819 -0.358 1.113 1.427 sum -1.485 -6.677 -29.230 30.019 Atomic orbital electron populations 1.21955 0.94000 1.02138 1.02484 1.21066 0.96934 0.99245 0.92629 0.90354 1.21946 1.00779 0.95003 0.98388 1.22153 1.01897 0.93793 0.84406 1.48244 1.56774 1.20812 1.08118 1.21261 0.76706 0.80878 0.91790 1.90760 1.55589 1.64792 1.35830 1.21480 1.03444 0.95967 0.94110 1.19513 1.01479 0.95193 0.88931 1.24069 0.88683 0.95358 0.97720 1.70425 1.34554 1.17543 1.08193 1.27097 0.83081 0.95691 0.96075 1.48090 1.18116 1.33792 1.19482 0.69270 1.77974 1.22832 1.18119 0.98569 1.21346 0.99430 0.92677 0.85947 1.21537 0.99258 0.94373 0.95775 0.93326 1.20873 0.95980 0.94759 0.85110 1.42694 1.57015 1.37365 1.02027 1.19669 1.22364 1.10630 0.85001 0.90291 1.25678 1.00594 0.99028 1.02004 1.69873 1.37318 1.25984 1.29129 0.85080 0.76637 0.78256 0.79427 1.21345 1.22320 1.19001 0.93474 0.90068 0.92540 0.92240 0.87080 0.87268 0.89156 0.86087 0.86864 0.90435 0.89557 0.70966 0.93403 0.91029 0.95964 0.95188 0.79848 0.94140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 8.11 71.98 0.58 -2.36 16 2 C -0.08 -1.80 2.71 -10.77 -0.03 -1.83 16 3 H 0.08 1.72 8.14 -2.39 -0.02 1.71 16 4 C -0.12 -2.03 5.63 30.67 0.17 -1.86 16 5 C 0.10 1.65 5.87 86.36 0.51 2.16 16 6 N -0.61 -16.98 2.97 -818.93 -2.43 -19.42 16 7 C 0.50 15.83 7.70 87.66 0.67 16.50 16 8 O -0.59 -25.53 15.40 -3.04 -0.05 -25.57 16 9 C -0.11 -2.34 4.03 29.85 0.12 -2.22 16 10 C -0.01 -0.27 5.13 29.85 0.15 -0.12 16 11 C 0.22 5.10 7.39 138.63 1.03 6.13 16 12 N -0.58 -11.33 11.19 -191.81 -2.15 -13.47 16 13 C 0.28 2.63 13.13 180.36 2.37 5.00 16 14 N -0.48 -5.13 7.45 -60.49 -0.45 -5.58 16 15 H 0.46 1.23 8.96 -213.11 -1.91 -0.68 16 16 N -0.34 -7.33 12.80 -51.34 -0.66 -7.99 16 17 C 0.13 4.61 5.05 86.36 0.44 5.04 16 18 C -0.09 -3.03 2.15 -10.72 -0.02 -3.05 16 19 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 20 C 0.16 6.62 5.19 86.38 0.45 7.07 16 21 N -0.75 -40.95 5.38 -343.45 -1.85 -42.79 16 22 C -0.24 -14.45 9.99 84.03 0.84 -13.61 16 23 H 0.08 4.40 7.83 -2.91 -0.02 4.38 16 24 C -0.08 -4.95 5.50 84.86 0.47 -4.49 16 25 N -0.97 -64.18 13.06 21.65 0.28 -63.90 16 26 Si 0.98 48.56 29.55 68.60 2.03 50.58 16 27 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 28 H -0.30 -14.83 7.11 99.48 0.71 -14.12 16 29 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 30 H 0.05 1.09 6.57 -2.39 -0.02 1.08 16 31 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.06 1.14 4.98 -2.39 -0.01 1.12 16 33 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.11 1.24 5.93 -2.38 -0.01 1.22 16 36 H 0.09 1.25 6.70 -2.39 -0.02 1.23 16 37 H 0.12 2.01 7.94 -2.39 -0.02 1.99 16 38 H 0.11 2.00 7.69 -2.39 -0.02 1.98 16 39 H 0.08 2.21 8.10 -2.39 -0.02 2.19 16 40 H 0.09 2.38 8.10 -2.38 -0.02 2.36 16 41 H 0.28 -0.81 8.06 -2.91 -0.02 -0.84 16 42 H 0.05 2.25 6.21 -2.38 -0.01 2.24 16 43 H 0.07 2.44 6.69 -2.39 -0.02 2.43 16 44 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.03 1.22 6.72 -2.39 -0.02 1.20 16 46 H 0.37 22.26 6.89 -92.71 -0.64 21.62 16 47 H 0.25 15.97 8.31 -92.71 -0.77 15.20 16 Total: -1.00 -89.16 371.23 0.93 -88.23 By element: Atomic # 1 Polarization: 29.10 SS G_CDS: -1.54 Total: 27.56 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: 7.74 Total: 12.36 kcal Atomic # 7 Polarization: -145.91 SS G_CDS: -7.25 Total: -153.16 kcal Atomic # 8 Polarization: -25.53 SS G_CDS: -0.05 Total: -25.57 kcal Atomic # 14 Polarization: 48.56 SS G_CDS: 2.03 Total: 50.58 kcal Total: -89.16 0.93 -88.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132754304.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.835 kcal (2) G-P(sol) polarization free energy of solvation -89.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds