Wall clock time and date at job start Fri Apr 10 2020 18:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.45861 * 2 1 4 4 C 1.53044 * 109.45184 * 240.02935 * 2 1 3 5 5 C 1.53186 * 109.31371 * 178.61862 * 4 2 1 6 6 N 1.46926 * 108.77675 * 54.63850 * 5 4 2 7 7 C 1.34779 * 120.63390 * 126.66155 * 6 5 4 8 8 O 1.21687 * 119.99848 * 175.39020 * 7 6 5 9 9 C 1.46773 * 119.99607 * 355.39500 * 7 6 5 10 10 C 1.41488 * 126.51897 * 49.92354 * 9 7 6 11 11 N 1.30281 * 108.18844 * 179.85150 * 10 9 7 12 12 N 1.39894 * 109.23302 * 0.41317 * 11 10 9 13 13 C 1.46505 * 125.75081 * 179.73735 * 12 11 10 14 14 C 1.34851 * 108.50706 * 359.73156 * 12 11 10 15 15 N 1.38007 * 126.44685 * 179.97438 * 14 12 11 16 16 C 1.46931 * 118.73550 * 306.39079 * 6 5 4 17 17 C 1.53041 * 109.46147 * 119.96900 * 2 1 3 18 18 H 1.08997 * 109.49785 * 61.42022 * 17 2 1 19 19 C 1.52999 * 109.52411 * 301.34209 * 17 2 1 20 20 N 1.46501 * 109.47235 * 175.14564 * 19 17 2 21 21 C 1.36933 * 120.00046 * 180.02562 * 20 19 17 22 22 H 1.07998 * 120.00275 * 0.02562 * 21 20 19 23 23 C 1.38817 * 119.99935 * 179.97438 * 21 20 19 24 24 N 1.31625 * 119.99876 * 180.02562 * 23 21 20 25 25 Si 1.86796 * 119.99921 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.47188 * 90.00089 * 25 23 21 27 27 H 1.48501 * 109.47005 * 209.99468 * 25 23 21 28 28 H 1.48497 * 109.47035 * 329.99556 * 25 23 21 29 29 H 1.08993 * 109.47406 * 300.02603 * 1 2 3 30 30 H 1.08999 * 109.46802 * 60.03408 * 1 2 3 31 31 H 1.09002 * 109.46930 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.49655 * 298.57490 * 4 2 1 33 33 H 1.09010 * 109.49341 * 58.63796 * 4 2 1 34 34 H 1.09004 * 109.59240 * 294.85152 * 5 4 2 35 35 H 1.08994 * 109.58699 * 174.42571 * 5 4 2 36 36 H 1.08004 * 125.90358 * 359.97438 * 10 9 7 37 37 H 1.08994 * 109.46678 * 270.00185 * 13 12 11 38 38 H 1.09007 * 109.47096 * 29.99759 * 13 12 11 39 39 H 1.08995 * 109.47603 * 149.99587 * 13 12 11 40 40 H 0.97004 * 119.99677 * 180.02562 * 15 14 12 41 41 H 0.96997 * 120.00100 * 0.03363 * 15 14 12 42 42 H 1.09006 * 109.58412 * 173.39139 * 16 6 5 43 43 H 1.08998 * 109.58698 * 293.81775 * 16 6 5 44 44 H 1.08998 * 109.47444 * 295.14291 * 19 17 2 45 45 H 1.08997 * 109.47188 * 55.14637 * 19 17 2 46 46 H 0.97000 * 120.00039 * 359.97438 * 20 19 17 47 47 H 0.96995 * 119.99718 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0396 -0.7209 -1.2501 5 6 3.5711 -0.6889 -1.2645 6 7 4.0677 -1.2493 -0.0003 7 6 4.9655 -2.2544 -0.0003 8 8 5.4322 -2.6534 1.0503 9 6 5.3804 -2.8677 -1.2676 10 6 5.8217 -2.1878 -2.4273 11 7 6.1010 -3.0765 -3.3381 12 7 5.8503 -4.3544 -2.8273 13 6 6.0361 -5.6161 -3.5484 14 6 5.4089 -4.2295 -1.5592 15 7 5.0518 -5.2575 -0.7104 16 6 3.5714 -0.6889 1.2641 17 6 2.0399 -0.7208 1.2500 18 1 1.6976 -1.7556 1.2383 19 6 1.5030 -0.0195 2.4994 20 7 1.8953 -0.7764 3.6908 21 6 1.5246 -0.3373 4.9337 22 1 0.9426 0.5668 5.0357 23 6 1.8958 -1.0548 6.0626 24 7 1.5390 -0.6329 7.2573 25 14 2.9017 -2.6189 5.8862 26 1 4.3480 -2.2846 5.9275 27 1 2.5759 -3.5451 7.0003 28 1 2.5808 -3.2703 4.5909 29 1 -0.3634 0.5142 0.8897 30 1 -0.3633 0.5133 -0.8903 31 1 -0.3633 -1.0277 0.0005 32 1 1.6974 -1.7557 -1.2383 33 1 1.6565 -0.2211 -2.1399 34 1 3.9143 0.3405 -1.3676 35 1 3.9412 -1.2849 -2.0986 36 1 5.9132 -1.1173 -2.5376 37 1 5.1146 -5.8758 -4.0694 38 1 6.8438 -5.5055 -4.2721 39 1 6.2882 -6.4056 -2.8405 40 1 4.7447 -5.0598 0.1883 41 1 5.1082 -6.1775 -1.0123 42 1 3.9416 -1.2849 2.0982 43 1 3.9145 0.3406 1.3671 44 1 1.9160 0.9876 2.5566 45 1 0.4158 0.0361 2.4460 46 1 2.4170 -1.5890 3.5992 47 1 1.7987 -1.1341 8.0461 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132766368.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:40 Heat of formation + Delta-G solvation = 56.983374 kcal Electronic energy + Delta-G solvation = -28147.693941 eV Core-core repulsion = 24367.374656 eV Total energy + Delta-G solvation = -3780.319285 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.59976 -39.80663 -37.74964 -35.34938 -34.90389 -33.69788 -33.27909 -31.86659 -30.24644 -29.15334 -28.06324 -27.34950 -25.62038 -23.76204 -22.89515 -21.95389 -21.19062 -21.04860 -19.97112 -19.13084 -17.87344 -17.51008 -17.04262 -16.47336 -16.05222 -15.65086 -14.99961 -14.84776 -14.68010 -14.36626 -14.03053 -13.97803 -13.69151 -13.31215 -13.25306 -13.11374 -13.10120 -12.78251 -12.59212 -12.48002 -11.92455 -11.72964 -11.64349 -11.45715 -11.20196 -11.05688 -10.91208 -10.80708 -10.59452 -10.28643 -10.06309 -9.98244 -9.64920 -9.50298 -9.18017 -8.82071 -8.46080 -7.99693 -7.14900 -5.70413 -3.05246 1.72038 1.96511 2.20445 3.01293 3.35937 3.37563 3.46516 3.51272 3.54853 4.16181 4.63517 4.67321 4.71507 4.75834 4.80832 4.87857 4.95093 5.02635 5.13075 5.21199 5.30143 5.34250 5.47667 5.58755 5.64040 5.65599 5.73775 5.80824 5.84917 5.93445 5.97168 6.03951 6.11067 6.18968 6.30133 6.33566 6.42787 6.46558 6.68496 6.79479 6.84971 6.96536 7.12863 7.55470 7.63538 8.05986 8.42249 8.48875 9.28378 10.01299 10.20940 11.48048 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.013942 B = 0.003870 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.817292 B = 7232.745014 C = 8635.335003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.084 4.084 3 H 0.073 0.927 4 C -0.127 4.127 5 C 0.104 3.896 6 N -0.605 5.605 7 C 0.599 3.401 8 O -0.549 6.549 9 C -0.360 4.360 10 C 0.111 3.889 11 N -0.308 5.308 12 N -0.400 5.400 13 C 0.103 3.897 14 C 0.421 3.579 15 N -0.836 5.836 16 C 0.120 3.880 17 C -0.105 4.105 18 H 0.071 0.929 19 C 0.162 3.838 20 N -0.757 5.757 21 C -0.242 4.242 22 H 0.090 0.910 23 C 0.005 3.995 24 N -0.936 5.936 25 Si 0.882 3.118 26 H -0.282 1.282 27 H -0.292 1.292 28 H -0.278 1.278 29 H 0.066 0.934 30 H 0.049 0.951 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.089 0.911 36 H 0.189 0.811 37 H 0.074 0.926 38 H 0.094 0.906 39 H 0.080 0.920 40 H 0.426 0.574 41 H 0.401 0.599 42 H 0.095 0.905 43 H 0.068 0.932 44 H 0.028 0.972 45 H 0.035 0.965 46 H 0.361 0.639 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.550 -7.203 -26.973 28.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.103 4.103 3 H 0.091 0.909 4 C -0.165 4.165 5 C -0.020 4.020 6 N -0.337 5.337 7 C 0.388 3.612 8 O -0.427 6.427 9 C -0.380 4.380 10 C -0.078 4.078 11 N -0.127 5.127 12 N -0.189 5.189 13 C -0.039 4.039 14 C 0.188 3.812 15 N -0.384 5.384 16 C -0.002 4.002 17 C -0.124 4.124 18 H 0.090 0.910 19 C 0.035 3.965 20 N -0.402 5.402 21 C -0.372 4.372 22 H 0.108 0.892 23 C -0.191 4.191 24 N -0.584 5.584 25 Si 0.713 3.287 26 H -0.208 1.208 27 H -0.219 1.219 28 H -0.204 1.204 29 H 0.085 0.915 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.108 0.892 36 H 0.205 0.795 37 H 0.092 0.908 38 H 0.112 0.888 39 H 0.098 0.902 40 H 0.260 0.740 41 H 0.230 0.770 42 H 0.113 0.887 43 H 0.087 0.913 44 H 0.046 0.954 45 H 0.052 0.948 46 H 0.194 0.806 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 6.150 -7.545 -27.525 29.195 hybrid contribution 0.286 -1.393 1.011 1.744 sum 6.435 -8.937 -26.514 28.710 Atomic orbital electron populations 1.21888 0.94972 1.01873 1.01830 1.21081 0.95928 0.99463 0.93800 0.90867 1.21965 0.94975 1.01322 0.98257 1.21882 0.94487 0.98954 0.86639 1.47990 1.42567 1.35713 1.07433 1.17130 0.77989 0.78781 0.87327 1.90811 1.55351 1.63163 1.33346 1.19197 1.29566 0.90258 0.98983 1.23712 0.95368 0.99435 0.89294 1.77103 1.27255 0.86217 1.22114 1.48088 1.55232 1.06934 1.08613 1.21788 1.03643 0.80914 0.97529 1.17897 0.90903 0.89076 0.83345 1.41530 1.74588 1.05613 1.16688 1.21696 0.93490 0.99289 0.85721 1.21759 0.94615 1.00643 0.95432 0.91017 1.20713 0.97316 0.94153 0.84320 1.42774 1.66153 1.28737 1.02584 1.19048 1.28370 1.07892 0.81869 0.89229 1.24652 1.00640 0.98686 0.95119 1.69707 1.50951 1.40739 0.97001 0.86575 0.80929 0.84448 0.76781 1.20840 1.21861 1.20373 0.91540 0.93153 0.92914 0.91774 0.90966 0.91473 0.89245 0.79472 0.90777 0.88766 0.90184 0.74026 0.77010 0.88667 0.91334 0.95440 0.94754 0.80579 0.93137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 8.81 37.16 0.33 -1.36 16 2 C -0.08 -0.99 2.23 -90.58 -0.20 -1.19 16 3 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 4 C -0.13 -1.26 5.36 -26.61 -0.14 -1.41 16 5 C 0.10 1.05 5.89 -3.71 -0.02 1.03 16 6 N -0.60 -8.37 2.97 -174.27 -0.52 -8.89 16 7 C 0.60 9.30 7.33 -12.81 -0.09 9.20 16 8 O -0.55 -10.71 16.25 5.20 0.08 -10.62 16 9 C -0.36 -4.62 5.15 -104.82 -0.54 -5.16 16 10 C 0.11 1.21 9.64 -16.97 -0.16 1.04 16 11 N -0.31 -3.47 12.47 30.88 0.38 -3.09 16 12 N -0.40 -3.91 4.00 -66.82 -0.27 -4.17 16 13 C 0.10 0.53 11.25 59.85 0.67 1.20 16 14 C 0.42 4.68 8.01 -153.78 -1.23 3.45 16 15 N -0.84 -7.36 9.04 31.40 0.28 -7.08 16 16 C 0.12 1.94 5.50 -3.71 -0.02 1.92 16 17 C -0.10 -1.62 1.92 -90.50 -0.17 -1.80 16 18 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 19 C 0.16 3.12 5.41 -4.04 -0.02 3.10 16 20 N -0.76 -18.46 5.18 -59.91 -0.31 -18.77 16 21 C -0.24 -7.01 10.47 -15.06 -0.16 -7.17 16 22 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 23 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 24 N -0.94 -30.10 13.97 55.49 0.78 -29.33 16 25 Si 0.88 23.27 27.74 -169.99 -4.71 18.56 16 26 H -0.28 -7.50 7.11 56.52 0.40 -7.10 16 27 H -0.29 -7.71 7.11 56.52 0.40 -7.31 16 28 H -0.28 -6.99 6.52 56.52 0.37 -6.62 16 29 H 0.07 0.84 6.30 -51.93 -0.33 0.51 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.09 0.83 4.54 -51.93 -0.24 0.59 16 36 H 0.19 1.52 7.62 -52.48 -0.40 1.12 16 37 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 38 H 0.09 0.42 8.14 -51.92 -0.42 0.00 16 39 H 0.08 0.24 7.46 -51.93 -0.39 -0.14 16 40 H 0.43 4.40 8.43 -40.82 -0.34 4.05 16 41 H 0.40 2.13 8.04 -40.82 -0.33 1.80 16 42 H 0.10 1.87 6.23 -51.93 -0.32 1.55 16 43 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 45 H 0.03 0.67 6.15 -51.93 -0.32 0.35 16 46 H 0.36 8.85 4.75 -40.82 -0.19 8.65 16 47 H 0.26 7.93 8.31 -40.82 -0.34 7.59 16 LS Contribution 370.26 15.07 5.58 5.58 Total: -1.00 -37.21 370.26 -7.67 -44.88 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: -7.10 Total: 10.02 kcal Atomic # 6 Polarization: 4.77 SS G_CDS: -1.86 Total: 2.90 kcal Atomic # 7 Polarization: -71.67 SS G_CDS: 0.35 Total: -71.32 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: 0.08 Total: -10.62 kcal Atomic # 14 Polarization: 23.27 SS G_CDS: -4.71 Total: 18.56 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -37.21 -7.67 -44.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132766368.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.864 kcal (2) G-P(sol) polarization free energy of solvation -37.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds