Wall clock time and date at job start Fri Apr 10 2020 18:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.45861 * 2 1 4 4 C 1.53044 * 109.45184 * 240.02935 * 2 1 3 5 5 C 1.53186 * 109.31371 * 178.61862 * 4 2 1 6 6 N 1.46926 * 108.77675 * 54.63850 * 5 4 2 7 7 C 1.34779 * 120.63390 * 126.66155 * 6 5 4 8 8 O 1.21687 * 119.99848 * 175.39020 * 7 6 5 9 9 C 1.46773 * 119.99607 * 355.39500 * 7 6 5 10 10 C 1.41488 * 126.51897 * 49.92354 * 9 7 6 11 11 N 1.30281 * 108.18844 * 179.85150 * 10 9 7 12 12 N 1.39894 * 109.23302 * 0.41317 * 11 10 9 13 13 C 1.46505 * 125.75081 * 179.73735 * 12 11 10 14 14 C 1.34851 * 108.50706 * 359.73156 * 12 11 10 15 15 N 1.38007 * 126.44685 * 179.97438 * 14 12 11 16 16 C 1.46931 * 118.73550 * 306.39079 * 6 5 4 17 17 C 1.53041 * 109.46147 * 119.96900 * 2 1 3 18 18 H 1.08997 * 109.49785 * 61.42022 * 17 2 1 19 19 C 1.52999 * 109.52411 * 301.34209 * 17 2 1 20 20 N 1.46501 * 109.47235 * 175.14564 * 19 17 2 21 21 C 1.36933 * 120.00046 * 180.02562 * 20 19 17 22 22 H 1.07998 * 120.00275 * 0.02562 * 21 20 19 23 23 C 1.38817 * 119.99935 * 179.97438 * 21 20 19 24 24 N 1.31625 * 119.99876 * 180.02562 * 23 21 20 25 25 Si 1.86796 * 119.99921 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.47188 * 90.00089 * 25 23 21 27 27 H 1.48501 * 109.47005 * 209.99468 * 25 23 21 28 28 H 1.48497 * 109.47035 * 329.99556 * 25 23 21 29 29 H 1.08993 * 109.47406 * 300.02603 * 1 2 3 30 30 H 1.08999 * 109.46802 * 60.03408 * 1 2 3 31 31 H 1.09002 * 109.46930 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.49655 * 298.57490 * 4 2 1 33 33 H 1.09010 * 109.49341 * 58.63796 * 4 2 1 34 34 H 1.09004 * 109.59240 * 294.85152 * 5 4 2 35 35 H 1.08994 * 109.58699 * 174.42571 * 5 4 2 36 36 H 1.08004 * 125.90358 * 359.97438 * 10 9 7 37 37 H 1.08994 * 109.46678 * 270.00185 * 13 12 11 38 38 H 1.09007 * 109.47096 * 29.99759 * 13 12 11 39 39 H 1.08995 * 109.47603 * 149.99587 * 13 12 11 40 40 H 0.97004 * 119.99677 * 180.02562 * 15 14 12 41 41 H 0.96997 * 120.00100 * 0.03363 * 15 14 12 42 42 H 1.09006 * 109.58412 * 173.39139 * 16 6 5 43 43 H 1.08998 * 109.58698 * 293.81775 * 16 6 5 44 44 H 1.08998 * 109.47444 * 295.14291 * 19 17 2 45 45 H 1.08997 * 109.47188 * 55.14637 * 19 17 2 46 46 H 0.97000 * 120.00039 * 359.97438 * 20 19 17 47 47 H 0.96995 * 119.99718 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0396 -0.7209 -1.2501 5 6 3.5711 -0.6889 -1.2645 6 7 4.0677 -1.2493 -0.0003 7 6 4.9655 -2.2544 -0.0003 8 8 5.4322 -2.6534 1.0503 9 6 5.3804 -2.8677 -1.2676 10 6 5.8217 -2.1878 -2.4273 11 7 6.1010 -3.0765 -3.3381 12 7 5.8503 -4.3544 -2.8273 13 6 6.0361 -5.6161 -3.5484 14 6 5.4089 -4.2295 -1.5592 15 7 5.0518 -5.2575 -0.7104 16 6 3.5714 -0.6889 1.2641 17 6 2.0399 -0.7208 1.2500 18 1 1.6976 -1.7556 1.2383 19 6 1.5030 -0.0195 2.4994 20 7 1.8953 -0.7764 3.6908 21 6 1.5246 -0.3373 4.9337 22 1 0.9426 0.5668 5.0357 23 6 1.8958 -1.0548 6.0626 24 7 1.5390 -0.6329 7.2573 25 14 2.9017 -2.6189 5.8862 26 1 4.3480 -2.2846 5.9275 27 1 2.5759 -3.5451 7.0003 28 1 2.5808 -3.2703 4.5909 29 1 -0.3634 0.5142 0.8897 30 1 -0.3633 0.5133 -0.8903 31 1 -0.3633 -1.0277 0.0005 32 1 1.6974 -1.7557 -1.2383 33 1 1.6565 -0.2211 -2.1399 34 1 3.9143 0.3405 -1.3676 35 1 3.9412 -1.2849 -2.0986 36 1 5.9132 -1.1173 -2.5376 37 1 5.1146 -5.8758 -4.0694 38 1 6.8438 -5.5055 -4.2721 39 1 6.2882 -6.4056 -2.8405 40 1 4.7447 -5.0598 0.1883 41 1 5.1082 -6.1775 -1.0123 42 1 3.9416 -1.2849 2.0982 43 1 3.9145 0.3406 1.3671 44 1 1.9160 0.9876 2.5566 45 1 0.4158 0.0361 2.4460 46 1 2.4170 -1.5890 3.5992 47 1 1.7987 -1.1341 8.0461 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132766368.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:40 Heat of formation + Delta-G solvation = 29.512762 kcal Electronic energy + Delta-G solvation = -28148.885156 eV Core-core repulsion = 24367.374656 eV Total energy + Delta-G solvation = -3781.510500 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.41814 -40.89273 -38.96685 -36.74374 -35.94026 -34.99291 -33.98487 -33.65578 -31.85091 -30.05916 -29.02359 -28.18072 -27.03807 -24.80177 -24.54465 -22.84454 -22.53964 -21.97149 -21.13581 -20.10664 -19.61559 -18.57086 -18.03930 -17.41260 -16.90967 -16.72434 -16.53466 -16.01583 -15.87535 -15.63089 -15.38496 -15.04149 -14.81443 -14.66061 -14.38300 -14.19191 -14.01370 -13.89886 -13.63746 -13.49298 -13.36158 -13.14311 -12.84191 -12.61956 -12.59565 -12.27797 -12.19101 -11.98418 -11.92088 -11.86449 -11.72834 -11.26477 -11.18415 -11.00602 -10.77729 -9.91878 -9.58568 -9.28231 -8.83547 -8.05338 -5.36720 0.90228 1.28882 1.30904 1.32884 1.38033 1.41935 1.95145 2.32482 2.44390 2.72412 3.26839 3.50218 3.55806 3.83498 3.84128 3.91255 4.05625 4.10018 4.22029 4.32910 4.39124 4.44257 4.51199 4.54018 4.59160 4.64061 4.66485 4.80638 4.81889 4.89988 4.97462 5.00484 5.11238 5.14679 5.24203 5.28455 5.35775 5.47674 5.57293 5.59801 5.67640 5.75129 6.16641 6.19909 6.48203 6.54480 6.84319 7.05933 7.28968 7.83748 8.00586 9.16438 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.013942 B = 0.003870 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.817292 B = 7232.745014 C = 8635.335003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.078 4.078 3 H 0.085 0.915 4 C -0.119 4.119 5 C 0.100 3.900 6 N -0.600 5.600 7 C 0.596 3.404 8 O -0.601 6.601 9 C -0.387 4.387 10 C 0.115 3.885 11 N -0.322 5.322 12 N -0.397 5.397 13 C 0.091 3.909 14 C 0.418 3.582 15 N -0.827 5.827 16 C 0.124 3.876 17 C -0.090 4.090 18 H 0.057 0.943 19 C 0.159 3.841 20 N -0.761 5.761 21 C -0.228 4.228 22 H 0.064 0.936 23 C -0.058 4.058 24 N -0.981 5.981 25 Si 0.946 3.054 26 H -0.286 1.286 27 H -0.290 1.290 28 H -0.262 1.262 29 H 0.049 0.951 30 H 0.076 0.924 31 H 0.046 0.954 32 H 0.054 0.946 33 H 0.106 0.894 34 H 0.090 0.910 35 H 0.103 0.897 36 H 0.211 0.789 37 H 0.090 0.910 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.420 0.580 41 H 0.417 0.583 42 H 0.055 0.945 43 H 0.073 0.927 44 H 0.029 0.971 45 H 0.038 0.962 46 H 0.361 0.639 47 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.820 -7.948 -30.718 32.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.097 4.097 3 H 0.103 0.897 4 C -0.157 4.157 5 C -0.022 4.022 6 N -0.331 5.331 7 C 0.386 3.614 8 O -0.483 6.483 9 C -0.407 4.407 10 C -0.073 4.073 11 N -0.141 5.141 12 N -0.186 5.186 13 C -0.048 4.048 14 C 0.182 3.818 15 N -0.375 5.375 16 C 0.000 4.000 17 C -0.110 4.110 18 H 0.076 0.924 19 C 0.033 3.967 20 N -0.406 5.406 21 C -0.359 4.359 22 H 0.082 0.918 23 C -0.250 4.250 24 N -0.632 5.632 25 Si 0.775 3.225 26 H -0.212 1.212 27 H -0.216 1.216 28 H -0.187 1.187 29 H 0.068 0.932 30 H 0.095 0.905 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.124 0.876 34 H 0.108 0.892 35 H 0.121 0.879 36 H 0.228 0.772 37 H 0.108 0.892 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.252 0.748 41 H 0.249 0.751 42 H 0.073 0.927 43 H 0.091 0.909 44 H 0.047 0.953 45 H 0.056 0.944 46 H 0.194 0.806 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 6.400 -8.304 -31.381 33.086 hybrid contribution 0.166 -1.115 2.106 2.389 sum 6.566 -9.420 -29.274 31.445 Atomic orbital electron populations 1.21862 0.94447 1.01698 1.02328 1.21079 0.96280 0.99752 0.92603 0.89697 1.21932 0.94573 1.00886 0.98289 1.22182 0.94700 1.00218 0.85067 1.48033 1.41956 1.35269 1.07854 1.17565 0.77599 0.78572 0.87629 1.90773 1.57363 1.64798 1.35348 1.19110 1.31769 0.91373 0.98476 1.24027 0.94564 1.00517 0.88237 1.77053 1.27513 0.86958 1.22554 1.48375 1.54347 1.07667 1.08195 1.22185 1.04876 0.79614 0.98171 1.18013 0.90538 0.89103 0.84110 1.41519 1.73769 1.06218 1.16030 1.21453 0.93787 0.98755 0.85959 1.21604 0.94068 0.99854 0.95485 0.92411 1.20922 0.97599 0.94042 0.84155 1.42855 1.66002 1.29152 1.02631 1.19081 1.26552 1.06511 0.83775 0.91847 1.25360 1.02604 1.02161 0.94878 1.69856 1.53068 1.42482 0.97820 0.85539 0.78857 0.80801 0.77332 1.21222 1.21623 1.18706 0.93234 0.90462 0.93440 0.92690 0.87618 0.89216 0.87850 0.77222 0.89160 0.88002 0.88030 0.74826 0.75093 0.92657 0.90900 0.95267 0.94388 0.80590 0.93309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 8.81 71.98 0.63 -2.33 16 2 C -0.08 -1.64 2.23 -10.77 -0.02 -1.67 16 3 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 4 C -0.12 -1.94 5.36 30.67 0.16 -1.77 16 5 C 0.10 1.72 5.89 86.36 0.51 2.22 16 6 N -0.60 -15.96 2.97 -823.50 -2.45 -18.41 16 7 C 0.60 18.33 7.33 86.47 0.63 18.96 16 8 O -0.60 -24.07 16.25 -4.31 -0.07 -24.14 16 9 C -0.39 -9.44 5.15 -19.99 -0.10 -9.54 16 10 C 0.12 2.26 9.64 85.72 0.83 3.08 16 11 N -0.32 -6.50 12.47 -56.22 -0.70 -7.20 16 12 N -0.40 -6.83 4.00 -365.31 -1.46 -8.29 16 13 C 0.09 0.68 11.25 127.77 1.44 2.12 16 14 C 0.42 8.63 8.01 132.69 1.06 9.70 16 15 N -0.83 -13.50 9.04 -54.57 -0.49 -13.99 16 16 C 0.12 3.97 5.50 86.36 0.48 4.44 16 17 C -0.09 -2.73 1.92 -10.72 -0.02 -2.75 16 18 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 19 C 0.16 6.10 5.41 86.38 0.47 6.57 16 20 N -0.76 -37.57 5.18 -343.46 -1.78 -39.35 16 21 C -0.23 -13.53 10.47 84.04 0.88 -12.64 16 22 H 0.06 4.03 8.06 -2.91 -0.02 4.01 16 23 C -0.06 -3.60 5.50 84.86 0.47 -3.13 16 24 N -0.98 -64.82 13.97 21.65 0.30 -64.52 16 25 Si 0.95 49.23 27.74 68.60 1.90 51.13 16 26 H -0.29 -14.94 7.11 99.48 0.71 -14.23 16 27 H -0.29 -14.88 7.11 99.48 0.71 -14.17 16 28 H -0.26 -12.77 6.52 99.48 0.65 -12.12 16 29 H 0.05 1.17 6.30 -2.39 -0.02 1.15 16 30 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.11 1.13 8.14 -2.38 -0.02 1.11 16 34 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 35 H 0.10 1.56 4.54 -2.39 -0.01 1.55 16 36 H 0.21 2.79 7.62 -2.91 -0.02 2.77 16 37 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 38 H 0.10 0.63 8.14 -2.38 -0.02 0.61 16 39 H 0.10 0.30 7.46 -2.39 -0.02 0.29 16 40 H 0.42 8.49 8.43 -92.71 -0.78 7.71 16 41 H 0.42 3.61 8.04 -92.71 -0.75 2.86 16 42 H 0.05 2.24 6.23 -2.38 -0.01 2.22 16 43 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 44 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.04 1.46 6.15 -2.39 -0.01 1.45 16 46 H 0.36 17.84 4.75 -92.71 -0.44 17.40 16 47 H 0.26 16.24 8.31 -92.71 -0.77 15.47 16 Total: -1.00 -83.50 370.26 1.65 -81.84 By element: Atomic # 1 Polarization: 30.66 SS G_CDS: -1.01 Total: 29.65 kcal Atomic # 6 Polarization: 5.85 SS G_CDS: 7.41 Total: 13.26 kcal Atomic # 7 Polarization: -145.17 SS G_CDS: -6.58 Total: -151.75 kcal Atomic # 8 Polarization: -24.07 SS G_CDS: -0.07 Total: -24.14 kcal Atomic # 14 Polarization: 49.23 SS G_CDS: 1.90 Total: 51.13 kcal Total: -83.50 1.65 -81.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132766368.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.357 kcal (2) G-P(sol) polarization free energy of solvation -83.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds