Wall clock time and date at job start Fri Apr 10 2020 18:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08991 * 109.46342 * 2 1 4 4 C 1.53072 * 109.33338 * 240.11231 * 2 1 3 5 5 C 1.53193 * 109.29648 * 301.13542 * 4 2 1 6 6 N 1.46927 * 108.89248 * 305.57871 * 5 4 2 7 7 C 1.34783 * 120.62954 * 233.51680 * 6 5 4 8 8 O 1.21688 * 119.99937 * 174.36475 * 7 6 5 9 9 C 1.46767 * 119.99801 * 354.36245 * 7 6 5 10 10 C 1.41481 * 126.52140 * 319.56504 * 9 7 6 11 11 N 1.30291 * 108.19195 * 179.97438 * 10 9 7 12 12 N 1.39895 * 109.22910 * 0.02562 * 11 10 9 13 13 C 1.46505 * 125.74420 * 179.97438 * 12 11 10 14 14 C 1.34846 * 108.50576 * 359.74249 * 12 11 10 15 15 N 1.38009 * 126.44310 * 180.24517 * 14 12 11 16 16 C 1.46922 * 118.73840 * 53.53422 * 6 5 4 17 17 C 1.53044 * 109.45986 * 119.97495 * 2 1 3 18 18 H 1.09000 * 109.49601 * 178.58998 * 17 2 1 19 19 C 1.52998 * 109.49806 * 298.68499 * 17 2 1 20 20 N 1.46498 * 109.47062 * 184.83965 * 19 17 2 21 21 C 1.36936 * 119.99726 * 180.02562 * 20 19 17 22 22 H 1.08007 * 120.00331 * 359.97438 * 21 20 19 23 23 C 1.38813 * 119.99986 * 180.02562 * 21 20 19 24 24 N 1.31616 * 119.99761 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99985 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.47110 * 60.00041 * 25 23 21 27 27 H 1.48499 * 109.46865 * 179.97438 * 25 23 21 28 28 H 1.48495 * 109.47247 * 299.99768 * 25 23 21 29 29 H 1.09007 * 109.47244 * 300.02388 * 1 2 3 30 30 H 1.08998 * 109.47495 * 60.02700 * 1 2 3 31 31 H 1.09007 * 109.47114 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.39437 * 181.26098 * 4 2 1 33 33 H 1.08994 * 109.62676 * 61.15058 * 4 2 1 34 34 H 1.08998 * 109.59008 * 185.72361 * 5 4 2 35 35 H 1.08997 * 109.58689 * 65.43903 * 5 4 2 36 36 H 1.08003 * 125.90931 * 359.97109 * 10 9 7 37 37 H 1.09000 * 109.47023 * 90.01701 * 13 12 11 38 38 H 1.09002 * 109.46941 * 210.01982 * 13 12 11 39 39 H 1.08994 * 109.46767 * 330.02393 * 13 12 11 40 40 H 0.97007 * 120.00146 * 180.18137 * 15 14 12 41 41 H 0.96998 * 120.00529 * 0.18415 * 15 14 12 42 42 H 1.08999 * 109.58403 * 66.18306 * 16 6 5 43 43 H 1.09010 * 109.58868 * 186.46163 * 16 6 5 44 44 H 1.09000 * 109.47445 * 304.84569 * 19 17 2 45 45 H 1.09005 * 109.46626 * 64.84076 * 19 17 2 46 46 H 0.96993 * 120.00235 * 0.02562 * 20 19 17 47 47 H 0.97003 * 119.99802 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8931 1.0276 0.0000 4 6 2.0367 -0.7197 -1.2523 5 6 1.4989 -2.1541 -1.2644 6 7 1.8619 -2.8089 -0.0002 7 6 2.5148 -3.9881 -0.0004 8 8 2.9004 -4.4702 1.0483 9 6 2.7607 -4.6905 -1.2653 10 6 1.8593 -4.8140 -2.3489 11 7 2.4423 -5.5062 -3.2861 12 7 3.7283 -5.8608 -2.8648 13 6 4.6971 -6.6422 -3.6376 14 6 3.9278 -5.3580 -1.6296 15 7 5.0721 -5.4837 -0.8683 16 6 1.4993 -2.1542 1.2641 17 6 2.0398 -0.7210 1.2500 18 1 3.1295 -0.7433 1.2381 19 6 1.5572 0.0193 2.4990 20 7 2.1397 -0.6026 3.6907 21 6 1.8480 -0.1070 4.9335 22 1 1.1889 0.7426 5.0351 23 6 2.4003 -0.6958 6.0627 24 7 3.2039 -1.7308 5.9389 25 14 2.0030 -0.0193 7.7580 26 1 0.5386 -0.0985 7.9919 27 1 2.7124 -0.8190 8.7887 28 1 2.4416 1.3970 7.8411 29 1 -0.3634 0.5142 0.8898 30 1 -0.3634 0.5134 -0.8902 31 1 -0.3634 -1.0277 0.0005 32 1 3.1265 -0.7400 -1.2421 33 1 1.6905 -0.1940 -2.1421 34 1 1.9373 -2.7018 -2.0985 35 1 0.4140 -2.1367 -1.3685 36 1 0.8606 -4.4051 -2.3918 37 1 5.3103 -5.9697 -4.2376 38 1 5.3352 -7.2057 -2.9568 39 1 4.1666 -7.3324 -4.2935 40 1 5.1135 -5.0842 0.0148 41 1 5.8350 -5.9714 -1.2161 42 1 0.4144 -2.1346 1.3674 43 1 1.9358 -2.7034 2.0984 44 1 1.8671 1.0629 2.4454 45 1 0.4700 -0.0344 2.5557 46 1 2.7319 -1.3653 3.5995 47 1 3.5896 -2.1425 6.7280 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132766370.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:42 Heat of formation + Delta-G solvation = 29.225756 kcal Electronic energy + Delta-G solvation = -28100.660198 eV Core-core repulsion = 24319.137252 eV Total energy + Delta-G solvation = -3781.522946 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.41360 -40.98791 -38.96316 -36.61644 -35.91463 -34.79069 -33.89583 -33.43403 -31.49554 -29.86463 -28.60065 -28.13497 -26.81767 -25.78059 -24.85504 -23.12732 -22.50142 -21.92618 -20.71121 -19.54477 -18.90947 -18.44257 -18.01320 -17.34269 -16.88798 -16.75812 -16.48722 -16.08764 -15.89546 -15.65305 -15.38586 -15.25493 -14.75155 -14.48824 -14.35397 -14.29652 -13.92865 -13.73665 -13.58698 -13.46149 -13.01294 -12.86356 -12.80599 -12.57193 -12.41098 -12.22412 -12.14374 -11.96278 -11.90175 -11.86622 -11.64477 -11.26828 -11.16368 -10.89280 -10.74648 -9.90946 -9.47828 -8.97485 -8.81961 -7.91862 -5.22007 0.89055 1.29477 1.30439 1.45928 1.50401 1.56447 2.08036 2.40752 2.57222 2.75069 3.40527 3.52871 3.72752 3.86689 3.92156 4.03977 4.11957 4.15922 4.31523 4.37274 4.40432 4.47702 4.52249 4.56675 4.60637 4.63752 4.67581 4.80022 4.85415 4.91013 4.98621 5.05599 5.16067 5.23137 5.31088 5.35239 5.37715 5.46247 5.50734 5.58754 5.65391 5.72949 6.18345 6.28537 6.50707 6.60263 6.86458 7.33983 7.36710 8.11374 8.33745 9.31387 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.016199 B = 0.003317 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.045432 B = 8438.782481 C = 9761.700292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.079 4.079 3 H 0.077 0.923 4 C -0.121 4.121 5 C 0.101 3.899 6 N -0.601 5.601 7 C 0.592 3.408 8 O -0.603 6.603 9 C -0.389 4.389 10 C 0.118 3.882 11 N -0.321 5.321 12 N -0.398 5.398 13 C 0.091 3.909 14 C 0.421 3.579 15 N -0.825 5.825 16 C 0.132 3.868 17 C -0.088 4.088 18 H 0.046 0.954 19 C 0.160 3.840 20 N -0.748 5.748 21 C -0.246 4.246 22 H 0.078 0.922 23 C -0.080 4.080 24 N -0.971 5.971 25 Si 0.977 3.023 26 H -0.276 1.276 27 H -0.297 1.297 28 H -0.275 1.275 29 H 0.047 0.953 30 H 0.080 0.920 31 H 0.057 0.943 32 H 0.051 0.949 33 H 0.108 0.892 34 H 0.101 0.899 35 H 0.092 0.908 36 H 0.211 0.789 37 H 0.090 0.910 38 H 0.101 0.899 39 H 0.102 0.898 40 H 0.421 0.579 41 H 0.417 0.583 42 H 0.072 0.928 43 H 0.049 0.951 44 H 0.022 0.978 45 H 0.031 0.969 46 H 0.370 0.630 47 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.167 -5.048 -26.672 27.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.098 4.098 3 H 0.095 0.905 4 C -0.159 4.159 5 C -0.021 4.021 6 N -0.332 5.332 7 C 0.383 3.617 8 O -0.485 6.485 9 C -0.409 4.409 10 C -0.071 4.071 11 N -0.140 5.140 12 N -0.187 5.187 13 C -0.049 4.049 14 C 0.185 3.815 15 N -0.374 5.374 16 C 0.009 3.991 17 C -0.108 4.108 18 H 0.065 0.935 19 C 0.034 3.966 20 N -0.390 5.390 21 C -0.378 4.378 22 H 0.096 0.904 23 C -0.271 4.271 24 N -0.622 5.622 25 Si 0.805 3.195 26 H -0.202 1.202 27 H -0.223 1.223 28 H -0.201 1.201 29 H 0.066 0.934 30 H 0.099 0.901 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.127 0.873 34 H 0.119 0.881 35 H 0.110 0.890 36 H 0.228 0.772 37 H 0.109 0.891 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.253 0.747 41 H 0.249 0.751 42 H 0.090 0.910 43 H 0.067 0.933 44 H 0.040 0.960 45 H 0.049 0.951 46 H 0.202 0.798 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 0.218 -5.760 -27.331 27.932 hybrid contribution 0.840 0.143 2.618 2.753 sum 1.058 -5.617 -24.713 25.366 Atomic orbital electron populations 1.21958 0.93848 1.02255 1.02501 1.21058 0.97075 0.99099 0.92549 0.90456 1.21925 1.00355 0.95193 0.98415 1.22189 1.01513 0.93409 0.84965 1.47947 1.57309 1.20169 1.07746 1.17596 0.76346 0.80149 0.87593 1.90789 1.54213 1.68317 1.35207 1.19157 0.98392 1.22878 1.00438 1.24061 0.99896 0.94776 0.88404 1.77049 0.91173 1.22436 1.23328 1.48390 1.13427 1.45472 1.11382 1.22194 0.90142 0.95675 0.96840 1.18065 0.88528 0.90127 0.84802 1.41583 1.13135 1.62239 1.20408 1.21336 0.99375 0.92584 0.85799 1.21509 0.99135 0.94456 0.95667 0.93521 1.20861 0.96015 0.94693 0.85075 1.42675 1.57041 1.37347 1.01965 1.19634 1.22487 1.10601 0.85040 0.90376 1.25649 1.00616 0.99003 1.01881 1.69867 1.37284 1.25888 1.29133 0.85168 0.77643 0.77461 0.79223 1.20226 1.22332 1.20143 0.93352 0.90107 0.92388 0.93012 0.87330 0.88107 0.89002 0.77216 0.89148 0.88042 0.87893 0.74657 0.75135 0.90985 0.93268 0.96034 0.95116 0.79787 0.94170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.02 8.11 71.98 0.58 -2.44 16 2 C -0.08 -1.86 2.71 -10.76 -0.03 -1.89 16 3 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 4 C -0.12 -2.28 5.63 30.68 0.17 -2.10 16 5 C 0.10 1.98 5.00 86.36 0.43 2.41 16 6 N -0.60 -17.96 2.97 -823.51 -2.45 -20.41 16 7 C 0.59 20.30 7.43 86.47 0.64 20.94 16 8 O -0.60 -26.72 15.72 -4.31 -0.07 -26.79 16 9 C -0.39 -10.48 5.21 -19.99 -0.10 -10.58 16 10 C 0.12 2.52 9.62 85.72 0.82 3.35 16 11 N -0.32 -6.97 12.47 -56.22 -0.70 -7.67 16 12 N -0.40 -7.52 4.00 -365.31 -1.46 -8.98 16 13 C 0.09 0.80 11.24 127.77 1.44 2.23 16 14 C 0.42 9.68 7.99 132.69 1.06 10.74 16 15 N -0.82 -15.70 9.04 -54.57 -0.49 -16.20 16 16 C 0.13 4.79 5.06 86.36 0.44 5.23 16 17 C -0.09 -3.02 2.16 -10.72 -0.02 -3.04 16 18 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 19 C 0.16 6.66 5.19 86.38 0.45 7.10 16 20 N -0.75 -40.67 5.38 -343.45 -1.85 -42.51 16 21 C -0.25 -14.42 9.99 84.03 0.84 -13.58 16 22 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 23 C -0.08 -4.81 5.50 84.86 0.47 -4.34 16 24 N -0.97 -63.33 13.06 21.65 0.28 -63.05 16 25 Si 0.98 48.13 29.55 68.60 2.03 50.16 16 26 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 27 H -0.30 -14.77 7.11 99.48 0.71 -14.06 16 28 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 29 H 0.05 1.13 6.57 -2.38 -0.02 1.11 16 30 H 0.08 1.18 8.14 -2.39 -0.02 1.17 16 31 H 0.06 1.19 4.98 -2.38 -0.01 1.18 16 32 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.10 1.77 4.80 -2.39 -0.01 1.76 16 35 H 0.09 1.41 6.70 -2.39 -0.02 1.39 16 36 H 0.21 3.18 7.38 -2.91 -0.02 3.16 16 37 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.10 0.44 7.47 -2.39 -0.02 0.43 16 39 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.42 10.04 8.00 -92.70 -0.74 9.30 16 41 H 0.42 4.54 8.05 -92.71 -0.75 3.79 16 42 H 0.07 2.47 6.69 -2.39 -0.02 2.46 16 43 H 0.05 2.32 6.20 -2.38 -0.01 2.31 16 44 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.03 1.25 6.72 -2.38 -0.02 1.23 16 46 H 0.37 22.11 6.90 -92.71 -0.64 21.47 16 47 H 0.25 15.79 8.31 -92.71 -0.77 15.02 16 Total: -1.00 -83.26 366.08 1.38 -81.88 By element: Atomic # 1 Polarization: 40.65 SS G_CDS: -1.10 Total: 39.55 kcal Atomic # 6 Polarization: 6.83 SS G_CDS: 7.19 Total: 14.02 kcal Atomic # 7 Polarization: -152.15 SS G_CDS: -6.67 Total: -158.82 kcal Atomic # 8 Polarization: -26.72 SS G_CDS: -0.07 Total: -26.79 kcal Atomic # 14 Polarization: 48.13 SS G_CDS: 2.03 Total: 50.16 kcal Total: -83.26 1.38 -81.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132766370.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.107 kcal (2) G-P(sol) polarization free energy of solvation -83.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds