Wall clock time and date at job start Fri Apr 10 2020 18:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47053 * 2 1 4 4 N 1.28717 * 126.02919 * 267.24196 * 3 2 1 5 5 N 1.28517 * 110.63488 * 180.02562 * 4 3 2 6 6 C 1.33320 * 109.44033 * 0.02562 * 5 4 3 7 7 C 1.37007 * 106.37006 * 0.02562 * 6 5 4 8 8 C 1.47234 * 127.18656 * 180.02562 * 7 6 5 9 9 O 1.21616 * 120.00076 * 152.86471 * 8 7 6 10 10 N 1.34776 * 120.00127 * 332.85708 * 8 7 6 11 11 C 1.46928 * 120.62639 * 359.49966 * 10 8 7 12 12 C 1.52770 * 109.00569 * 233.57859 * 11 10 8 13 13 C 1.53043 * 109.38126 * 305.58901 * 12 11 10 14 14 H 1.09005 * 109.45625 * 181.25623 * 13 12 11 15 15 C 1.52990 * 109.46167 * 301.21840 * 13 12 11 16 16 C 1.53041 * 109.53485 * 61.24146 * 13 12 11 17 17 H 1.09000 * 109.50124 * 58.58949 * 16 13 12 18 18 C 1.53006 * 109.52172 * 178.66142 * 16 13 12 19 19 N 1.46495 * 109.47118 * 184.85240 * 18 16 13 20 20 C 1.36940 * 120.00018 * 180.02562 * 19 18 16 21 21 H 1.08006 * 119.99479 * 0.02562 * 20 19 18 22 22 C 1.38805 * 120.00326 * 180.02562 * 20 19 18 23 23 N 1.31619 * 119.99896 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00360 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.46985 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.47076 * 119.99890 * 24 22 20 27 27 H 1.48496 * 109.47407 * 240.00285 * 24 22 20 28 28 C 1.46921 * 120.63410 * 179.77297 * 10 8 7 29 29 H 1.08998 * 109.47152 * 67.66959 * 1 2 3 30 30 H 1.09007 * 109.46971 * 187.66286 * 1 2 3 31 31 H 1.09001 * 109.47651 * 307.66508 * 1 2 3 32 32 H 1.08998 * 109.47059 * 239.99292 * 2 1 3 33 33 H 1.09005 * 109.46961 * 119.99900 * 2 1 3 34 34 H 1.07991 * 126.81584 * 179.97438 * 6 5 4 35 35 H 1.08998 * 109.58924 * 353.41470 * 11 10 8 36 36 H 1.08996 * 109.58402 * 113.84539 * 11 10 8 37 37 H 1.09000 * 109.56455 * 185.55589 * 12 11 10 38 38 H 1.08994 * 109.38467 * 65.51535 * 12 11 10 39 39 H 1.08998 * 109.47324 * 180.02562 * 15 13 12 40 40 H 1.09003 * 109.47549 * 300.07069 * 15 13 12 41 41 H 1.09006 * 109.47436 * 60.06939 * 15 13 12 42 42 H 1.08997 * 109.47252 * 304.85888 * 18 16 13 43 43 H 1.09008 * 109.46703 * 64.85515 * 18 16 13 44 44 H 0.96994 * 120.00256 * 0.02562 * 19 18 16 45 45 H 0.96998 * 120.00273 * 179.97438 * 23 22 20 46 46 H 1.09000 * 109.58957 * 246.16212 * 28 10 8 47 47 H 1.09004 * 109.58376 * 6.58897 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.3179 2.0783 -1.0398 5 7 2.7159 3.2518 -0.6990 6 6 2.6878 3.3615 0.6294 7 6 2.2387 2.1584 1.1068 8 6 2.0337 1.7803 2.5149 9 8 1.2100 0.9334 2.8034 10 7 2.7590 2.3726 3.4842 11 6 3.7657 3.3895 3.1504 12 6 5.1022 2.9897 3.7731 13 6 4.9144 2.7597 5.2744 14 1 5.8719 2.4961 5.7239 15 6 4.3819 4.0387 5.9234 16 6 3.9162 1.6212 5.4968 17 1 4.2833 0.7157 5.0136 18 6 3.7539 1.3692 6.9972 19 7 2.8889 0.2056 7.2062 20 6 2.5984 -0.2121 8.4776 21 1 3.0067 0.3167 9.3262 22 6 1.7792 -1.3150 8.6757 23 7 1.2820 -1.9597 7.6416 24 14 1.3835 -1.8851 10.4100 25 1 2.0610 -0.9980 11.3894 26 1 -0.0847 -1.8303 10.6262 27 1 1.8590 -3.2799 10.5932 28 6 2.5624 2.0095 4.8942 29 1 -0.3633 0.3905 -0.9506 30 1 -0.3633 -1.0186 0.1370 31 1 -0.3634 0.6279 0.8135 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.9649 4.2267 1.2133 35 1 3.8736 3.4552 2.0677 36 1 3.4550 4.3555 3.5480 37 1 5.8308 3.7848 3.6152 38 1 5.4586 2.0716 3.3061 39 1 4.2485 3.8752 6.9927 40 1 5.0927 4.8497 5.7650 41 1 3.4241 4.3023 5.4745 42 1 4.7311 1.1802 7.4417 43 1 3.3048 2.2448 7.4662 44 1 2.5219 -0.2691 6.4441 45 1 0.7098 -2.7306 7.7799 46 1 2.1515 2.8608 5.4369 47 1 1.8766 1.1649 4.9618 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132793882.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:05 Heat of formation + Delta-G solvation = 85.926972 kcal Electronic energy + Delta-G solvation = -28367.350506 eV Core-core repulsion = 24588.286309 eV Total energy + Delta-G solvation = -3779.064196 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.54774 -40.37729 -38.18014 -35.78987 -35.01859 -33.70978 -32.17925 -31.48194 -30.97903 -29.80287 -27.79830 -26.05088 -25.25576 -24.65619 -23.40924 -23.15072 -22.18331 -21.26731 -19.91974 -18.58665 -17.51703 -17.33488 -17.01110 -16.71023 -15.99368 -15.35680 -15.12970 -15.00240 -14.81676 -14.43619 -14.14470 -13.88144 -13.61146 -13.35003 -13.25446 -13.04559 -12.75300 -12.57528 -12.43221 -12.31098 -11.85936 -11.71134 -11.61473 -11.32719 -11.22535 -11.12808 -10.94680 -10.84017 -10.71617 -10.42303 -10.31737 -10.24562 -10.12156 -9.92390 -9.65937 -9.52890 -8.88383 -8.62545 -6.91920 -5.75308 -3.04872 0.81864 1.85638 2.10741 2.78534 2.93924 3.43402 3.48793 3.51230 4.01543 4.17099 4.43154 4.55973 4.63386 4.63987 4.67830 4.79130 4.84744 4.93001 5.07840 5.14377 5.18458 5.30098 5.36705 5.45479 5.55711 5.55855 5.61322 5.64320 5.71543 5.74612 5.82042 5.88382 5.89901 5.97838 6.06185 6.20596 6.26411 6.28769 6.29856 6.45703 6.52877 6.72015 6.83669 7.23239 7.70599 7.92763 8.16176 8.42593 9.53916 10.11213 10.45233 11.47107 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.013934 B = 0.003696 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.054101 B = 7574.627816 C = 9290.541274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.109 3.891 3 N -0.253 5.253 4 N -0.064 5.064 5 N -0.275 5.275 6 C -0.018 4.018 7 C -0.056 4.056 8 C 0.585 3.415 9 O -0.519 6.519 10 N -0.589 5.589 11 C 0.075 3.925 12 C -0.128 4.128 13 C -0.086 4.086 14 H 0.075 0.925 15 C -0.154 4.154 16 C -0.102 4.102 17 H 0.074 0.926 18 C 0.161 3.839 19 N -0.733 5.733 20 C -0.241 4.241 21 H 0.070 0.930 22 C -0.012 4.012 23 N -0.930 5.930 24 Si 0.905 3.095 25 H -0.280 1.280 26 H -0.292 1.292 27 H -0.292 1.292 28 C 0.122 3.878 29 H 0.063 0.937 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.108 0.892 33 H 0.112 0.888 34 H 0.207 0.793 35 H 0.101 0.899 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.051 0.949 41 H 0.057 0.943 42 H 0.022 0.978 43 H 0.024 0.976 44 H 0.384 0.616 45 H 0.254 0.746 46 H 0.074 0.926 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.393 11.513 -14.578 19.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.011 4.011 3 N -0.050 5.050 4 N -0.044 5.044 5 N -0.138 5.138 6 C -0.177 4.177 7 C -0.191 4.191 8 C 0.370 3.630 9 O -0.394 6.394 10 N -0.321 5.321 11 C -0.047 4.047 12 C -0.166 4.166 13 C -0.105 4.105 14 H 0.093 0.907 15 C -0.211 4.211 16 C -0.122 4.122 17 H 0.092 0.908 18 C 0.033 3.967 19 N -0.378 5.378 20 C -0.372 4.372 21 H 0.088 0.912 22 C -0.208 4.208 23 N -0.578 5.578 24 Si 0.736 3.264 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.219 1.219 28 C 0.001 3.999 29 H 0.082 0.918 30 H 0.106 0.894 31 H 0.095 0.905 32 H 0.127 0.873 33 H 0.131 0.869 34 H 0.223 0.777 35 H 0.118 0.882 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.070 0.930 41 H 0.076 0.924 42 H 0.039 0.961 43 H 0.042 0.958 44 H 0.218 0.782 45 H 0.064 0.936 46 H 0.093 0.907 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 5.000 11.011 -15.781 19.882 hybrid contribution -0.368 -0.637 1.899 2.037 sum 4.632 10.374 -13.881 17.938 Atomic orbital electron populations 1.22112 0.92182 1.04637 1.03372 1.22322 0.97263 0.75364 1.06120 1.47933 1.39991 1.13673 1.03356 1.78236 1.14970 0.99531 1.11677 1.74899 1.16732 1.09681 1.12465 1.24177 1.03402 0.98262 0.91896 1.22080 1.11591 0.94276 0.91146 1.16764 0.81927 0.81839 0.82471 1.90901 1.34201 1.31755 1.82557 1.47841 1.37103 1.39984 1.07210 1.22480 0.88560 0.91532 1.02150 1.21862 0.96300 1.02174 0.96281 1.21090 0.99287 0.95546 0.94565 0.90686 1.21993 1.00862 0.96550 1.01653 1.21698 0.94359 0.97920 0.98177 0.90796 1.20683 0.94343 0.91075 0.90643 1.42422 1.57427 1.31954 1.06011 1.19243 1.24112 1.09067 0.84801 0.91171 1.24740 1.00478 0.98534 0.97096 1.69677 1.37685 1.22264 1.28203 0.86148 0.77760 0.78299 0.84158 1.20575 1.21872 1.21908 1.21870 0.98466 1.02427 0.77143 0.91838 0.89366 0.90533 0.87333 0.86933 0.77682 0.88180 0.90304 0.90491 0.91571 0.91705 0.93001 0.92436 0.96060 0.95819 0.78175 0.93556 0.90737 0.87607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.59 10.17 37.16 0.38 -1.21 16 2 C 0.11 1.09 6.43 -4.04 -0.03 1.07 16 3 N -0.25 -3.11 3.39 -57.37 -0.19 -3.30 16 4 N -0.06 -0.85 13.14 60.35 0.79 -0.05 16 5 N -0.27 -3.59 12.35 30.47 0.38 -3.21 16 6 C -0.02 -0.19 9.75 -17.35 -0.17 -0.36 16 7 C -0.06 -0.70 6.57 -82.34 -0.54 -1.24 16 8 C 0.59 8.39 7.51 -12.61 -0.09 8.30 16 9 O -0.52 -9.20 14.43 5.26 0.08 -9.12 16 10 N -0.59 -7.49 2.98 -174.37 -0.52 -8.01 16 11 C 0.08 0.68 4.97 -3.93 -0.02 0.66 16 12 C -0.13 -1.16 5.61 -26.83 -0.15 -1.32 16 13 C -0.09 -0.96 2.71 -90.58 -0.25 -1.20 16 14 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 15 C -0.15 -1.55 8.11 37.15 0.30 -1.25 16 16 C -0.10 -1.53 2.15 -90.50 -0.19 -1.73 16 17 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 18 C 0.16 3.04 5.19 -4.04 -0.02 3.02 16 19 N -0.73 -18.16 5.38 -59.91 -0.32 -18.48 16 20 C -0.24 -6.68 9.99 -15.06 -0.15 -6.83 16 21 H 0.07 1.89 7.83 -52.48 -0.41 1.47 16 22 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 23 N -0.93 -28.22 13.06 55.49 0.72 -27.49 16 24 Si 0.91 22.36 29.55 -169.99 -5.02 17.34 16 25 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 26 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 27 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 28 C 0.12 1.86 5.05 -3.72 -0.02 1.84 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.08 0.93 7.45 -51.93 -0.39 0.55 16 32 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.11 1.21 7.38 -51.93 -0.38 0.83 16 34 H 0.21 1.52 5.96 -52.49 -0.31 1.21 16 35 H 0.10 0.80 3.47 -51.93 -0.18 0.62 16 36 H 0.08 0.59 6.70 -51.93 -0.35 0.24 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.74 6.57 -51.93 -0.34 0.39 16 40 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.06 0.57 4.99 -51.93 -0.26 0.31 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.02 0.45 6.73 -51.92 -0.35 0.10 16 44 H 0.38 10.17 6.89 -40.82 -0.28 9.89 16 45 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 46 H 0.07 1.09 6.69 -51.93 -0.35 0.74 16 47 H 0.11 2.05 6.20 -51.93 -0.32 1.72 16 LS Contribution 363.77 15.07 5.48 5.48 Total: -1.00 -33.42 363.77 -6.52 -39.94 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -6.86 Total: 7.62 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -1.05 Total: -0.70 kcal Atomic # 7 Polarization: -61.41 SS G_CDS: 0.86 Total: -60.56 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: 0.08 Total: -9.12 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.42 -6.52 -39.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132793882.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.866 kcal (2) G-P(sol) polarization free energy of solvation -33.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds