Wall clock time and date at job start Fri Apr 10 2020 18:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47053 * 2 1 4 4 N 1.28717 * 126.02919 * 267.24196 * 3 2 1 5 5 N 1.28517 * 110.63488 * 180.02562 * 4 3 2 6 6 C 1.33320 * 109.44033 * 0.02562 * 5 4 3 7 7 C 1.37007 * 106.37006 * 0.02562 * 6 5 4 8 8 C 1.47234 * 127.18656 * 180.02562 * 7 6 5 9 9 O 1.21616 * 120.00076 * 152.86471 * 8 7 6 10 10 N 1.34776 * 120.00127 * 332.85708 * 8 7 6 11 11 C 1.46928 * 120.62639 * 359.49966 * 10 8 7 12 12 C 1.52770 * 109.00569 * 233.57859 * 11 10 8 13 13 C 1.53043 * 109.38126 * 305.58901 * 12 11 10 14 14 H 1.09005 * 109.45625 * 181.25623 * 13 12 11 15 15 C 1.52990 * 109.46167 * 301.21840 * 13 12 11 16 16 C 1.53041 * 109.53485 * 61.24146 * 13 12 11 17 17 H 1.09000 * 109.50124 * 58.58949 * 16 13 12 18 18 C 1.53006 * 109.52172 * 178.66142 * 16 13 12 19 19 N 1.46495 * 109.47118 * 184.85240 * 18 16 13 20 20 C 1.36940 * 120.00018 * 180.02562 * 19 18 16 21 21 H 1.08006 * 119.99479 * 0.02562 * 20 19 18 22 22 C 1.38805 * 120.00326 * 180.02562 * 20 19 18 23 23 N 1.31619 * 119.99896 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00360 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.46985 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.47076 * 119.99890 * 24 22 20 27 27 H 1.48496 * 109.47407 * 240.00285 * 24 22 20 28 28 C 1.46921 * 120.63410 * 179.77297 * 10 8 7 29 29 H 1.08998 * 109.47152 * 67.66959 * 1 2 3 30 30 H 1.09007 * 109.46971 * 187.66286 * 1 2 3 31 31 H 1.09001 * 109.47651 * 307.66508 * 1 2 3 32 32 H 1.08998 * 109.47059 * 239.99292 * 2 1 3 33 33 H 1.09005 * 109.46961 * 119.99900 * 2 1 3 34 34 H 1.07991 * 126.81584 * 179.97438 * 6 5 4 35 35 H 1.08998 * 109.58924 * 353.41470 * 11 10 8 36 36 H 1.08996 * 109.58402 * 113.84539 * 11 10 8 37 37 H 1.09000 * 109.56455 * 185.55589 * 12 11 10 38 38 H 1.08994 * 109.38467 * 65.51535 * 12 11 10 39 39 H 1.08998 * 109.47324 * 180.02562 * 15 13 12 40 40 H 1.09003 * 109.47549 * 300.07069 * 15 13 12 41 41 H 1.09006 * 109.47436 * 60.06939 * 15 13 12 42 42 H 1.08997 * 109.47252 * 304.85888 * 18 16 13 43 43 H 1.09008 * 109.46703 * 64.85515 * 18 16 13 44 44 H 0.96994 * 120.00256 * 0.02562 * 19 18 16 45 45 H 0.96998 * 120.00273 * 179.97438 * 23 22 20 46 46 H 1.09000 * 109.58957 * 246.16212 * 28 10 8 47 47 H 1.09004 * 109.58376 * 6.58897 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.3179 2.0783 -1.0398 5 7 2.7159 3.2518 -0.6990 6 6 2.6878 3.3615 0.6294 7 6 2.2387 2.1584 1.1068 8 6 2.0337 1.7803 2.5149 9 8 1.2100 0.9334 2.8034 10 7 2.7590 2.3726 3.4842 11 6 3.7657 3.3895 3.1504 12 6 5.1022 2.9897 3.7731 13 6 4.9144 2.7597 5.2744 14 1 5.8719 2.4961 5.7239 15 6 4.3819 4.0387 5.9234 16 6 3.9162 1.6212 5.4968 17 1 4.2833 0.7157 5.0136 18 6 3.7539 1.3692 6.9972 19 7 2.8889 0.2056 7.2062 20 6 2.5984 -0.2121 8.4776 21 1 3.0067 0.3167 9.3262 22 6 1.7792 -1.3150 8.6757 23 7 1.2820 -1.9597 7.6416 24 14 1.3835 -1.8851 10.4100 25 1 2.0610 -0.9980 11.3894 26 1 -0.0847 -1.8303 10.6262 27 1 1.8590 -3.2799 10.5932 28 6 2.5624 2.0095 4.8942 29 1 -0.3633 0.3905 -0.9506 30 1 -0.3633 -1.0186 0.1370 31 1 -0.3634 0.6279 0.8135 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.9649 4.2267 1.2133 35 1 3.8736 3.4552 2.0677 36 1 3.4550 4.3555 3.5480 37 1 5.8308 3.7848 3.6152 38 1 5.4586 2.0716 3.3061 39 1 4.2485 3.8752 6.9927 40 1 5.0927 4.8497 5.7650 41 1 3.4241 4.3023 5.4745 42 1 4.7311 1.1802 7.4417 43 1 3.3048 2.2448 7.4662 44 1 2.5219 -0.2691 6.4441 45 1 0.7098 -2.7306 7.7799 46 1 2.1515 2.8608 5.4369 47 1 1.8766 1.1649 4.9618 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132793882.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:04 Heat of formation + Delta-G solvation = 62.538598 kcal Electronic energy + Delta-G solvation = -28368.364702 eV Core-core repulsion = 24588.286309 eV Total energy + Delta-G solvation = -3780.078392 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.49817 -41.45563 -39.33018 -36.89646 -36.38391 -35.06108 -33.53784 -32.77410 -31.85434 -31.28253 -28.79151 -27.49022 -26.35452 -25.55295 -25.02441 -24.17350 -23.21800 -22.57144 -20.98556 -19.75260 -18.97481 -18.46053 -18.23030 -17.70662 -17.13913 -16.75989 -16.29655 -16.18384 -15.83836 -15.64444 -15.31548 -15.20215 -14.96297 -14.53767 -14.44958 -14.16069 -14.02257 -13.79459 -13.39841 -13.24025 -13.04347 -12.88373 -12.76322 -12.59898 -12.53941 -12.41642 -12.14456 -12.09936 -11.99008 -11.89901 -11.72045 -11.45178 -11.30261 -11.23867 -11.11842 -10.93179 -10.50665 -9.68711 -8.98781 -7.94166 -5.23654 -0.16198 0.92985 1.16229 1.46477 1.47455 1.57518 1.75086 1.89361 2.55880 3.08164 3.29653 3.39533 3.58089 3.68668 3.79941 3.81589 3.83657 3.86640 4.07274 4.14640 4.18486 4.25248 4.31875 4.41133 4.53443 4.57199 4.58666 4.69643 4.74794 4.78456 4.83619 4.88757 4.93261 5.01312 5.07698 5.12440 5.18921 5.26921 5.29839 5.33280 5.39672 5.45397 5.50685 5.64091 6.18585 6.27221 6.84321 7.20122 7.33136 8.09871 8.31320 9.29418 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.013934 B = 0.003696 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.054101 B = 7574.627816 C = 9290.541274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.104 3.896 3 N -0.252 5.252 4 N -0.074 5.074 5 N -0.292 5.292 6 C 0.003 3.997 7 C -0.072 4.072 8 C 0.583 3.417 9 O -0.565 6.565 10 N -0.583 5.583 11 C 0.070 3.930 12 C -0.122 4.122 13 C -0.080 4.080 14 H 0.079 0.921 15 C -0.151 4.151 16 C -0.090 4.090 17 H 0.050 0.950 18 C 0.159 3.841 19 N -0.748 5.748 20 C -0.243 4.243 21 H 0.079 0.921 22 C -0.077 4.077 23 N -0.970 5.970 24 Si 0.972 3.028 25 H -0.263 1.263 26 H -0.295 1.295 27 H -0.294 1.294 28 C 0.132 3.868 29 H 0.073 0.927 30 H 0.102 0.898 31 H 0.046 0.954 32 H 0.137 0.863 33 H 0.099 0.901 34 H 0.244 0.756 35 H 0.116 0.884 36 H 0.108 0.892 37 H 0.115 0.885 38 H 0.054 0.946 39 H 0.048 0.952 40 H 0.081 0.919 41 H 0.059 0.941 42 H 0.023 0.977 43 H 0.033 0.967 44 H 0.371 0.629 45 H 0.249 0.751 46 H 0.084 0.916 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.090 14.105 -14.884 21.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.015 4.015 3 N -0.050 5.050 4 N -0.054 5.054 5 N -0.154 5.154 6 C -0.157 4.157 7 C -0.207 4.207 8 C 0.369 3.631 9 O -0.443 6.443 10 N -0.314 5.314 11 C -0.051 4.051 12 C -0.160 4.160 13 C -0.099 4.099 14 H 0.097 0.903 15 C -0.207 4.207 16 C -0.110 4.110 17 H 0.068 0.932 18 C 0.033 3.967 19 N -0.390 5.390 20 C -0.374 4.374 21 H 0.096 0.904 22 C -0.269 4.269 23 N -0.621 5.621 24 Si 0.801 3.199 25 H -0.187 1.187 26 H -0.222 1.222 27 H -0.222 1.222 28 C 0.010 3.990 29 H 0.092 0.908 30 H 0.121 0.879 31 H 0.065 0.935 32 H 0.155 0.845 33 H 0.118 0.882 34 H 0.259 0.741 35 H 0.134 0.866 36 H 0.126 0.874 37 H 0.133 0.867 38 H 0.073 0.927 39 H 0.067 0.933 40 H 0.100 0.900 41 H 0.078 0.922 42 H 0.041 0.959 43 H 0.051 0.949 44 H 0.203 0.797 45 H 0.058 0.942 46 H 0.102 0.898 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.760 13.671 -16.089 22.169 hybrid contribution -0.846 -1.397 1.988 2.573 sum 5.914 12.275 -14.102 19.609 Atomic orbital electron populations 1.22057 0.91993 1.04952 1.02621 1.22500 0.97412 0.74770 1.06844 1.48135 1.39457 1.14171 1.03191 1.78212 1.15354 0.99923 1.11916 1.74899 1.17424 1.09689 1.13414 1.24742 1.01298 0.98384 0.91264 1.21945 1.13210 0.95265 0.90251 1.17037 0.81431 0.81258 0.83425 1.90883 1.36281 1.33869 1.83313 1.47859 1.37458 1.40304 1.05766 1.22846 0.87470 0.91415 1.03355 1.21865 0.97015 1.03059 0.94072 1.21074 0.97897 0.94289 0.96643 0.90290 1.21975 1.01799 0.96570 1.00405 1.21551 0.95451 0.98929 0.95032 0.93162 1.20870 0.93044 0.89132 0.93664 1.42677 1.58183 1.33446 1.04740 1.19687 1.22992 1.08614 0.86148 0.90359 1.25582 1.01198 0.99223 1.00897 1.69854 1.38974 1.22897 1.30412 0.85087 0.77138 0.77658 0.79970 1.18702 1.22218 1.22178 1.21521 0.97568 1.00900 0.79030 0.90790 0.87941 0.93496 0.84522 0.88234 0.74050 0.86644 0.87389 0.86726 0.92734 0.93318 0.90025 0.92170 0.95947 0.94875 0.79734 0.94175 0.89833 0.92495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.13 10.17 71.98 0.73 -2.40 16 2 C 0.10 2.10 6.43 86.38 0.56 2.66 16 3 N -0.25 -6.09 3.39 -335.43 -1.14 -7.23 16 4 N -0.07 -1.87 13.14 37.02 0.49 -1.39 16 5 N -0.29 -7.04 12.35 -57.51 -0.71 -7.75 16 6 C 0.00 0.06 9.75 84.18 0.82 0.88 16 7 C -0.07 -1.75 6.57 40.41 0.27 -1.48 16 8 C 0.58 17.00 7.51 86.61 0.65 17.65 16 9 O -0.56 -21.42 14.43 -4.08 -0.06 -21.48 16 10 N -0.58 -14.42 2.98 -823.84 -2.45 -16.88 16 11 C 0.07 1.01 4.97 86.22 0.43 1.44 16 12 C -0.12 -1.78 5.61 30.53 0.17 -1.60 16 13 C -0.08 -1.58 2.71 -10.77 -0.03 -1.61 16 14 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 15 C -0.15 -2.50 8.11 71.98 0.58 -1.92 16 16 C -0.09 -2.71 2.15 -10.72 -0.02 -2.73 16 17 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 18 C 0.16 6.07 5.19 86.38 0.45 6.52 16 19 N -0.75 -38.24 5.38 -343.44 -1.85 -40.09 16 20 C -0.24 -13.63 9.99 84.03 0.84 -12.79 16 21 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 22 C -0.08 -4.49 5.50 84.86 0.47 -4.02 16 23 N -0.97 -61.09 13.06 21.65 0.28 -60.81 16 24 Si 0.97 46.67 29.55 68.60 2.03 48.70 16 25 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 26 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 27 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 28 C 0.13 4.11 5.05 86.36 0.44 4.55 16 29 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.10 1.69 8.14 -2.38 -0.02 1.67 16 31 H 0.05 1.22 7.45 -2.39 -0.02 1.20 16 32 H 0.14 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.10 2.28 7.38 -2.38 -0.02 2.26 16 34 H 0.24 2.52 5.96 -2.92 -0.02 2.51 16 35 H 0.12 1.37 3.47 -2.39 -0.01 1.36 16 36 H 0.11 1.05 6.70 -2.39 -0.02 1.03 16 37 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.05 0.98 6.57 -2.39 -0.02 0.96 16 40 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.06 0.97 4.99 -2.38 -0.01 0.96 16 42 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.03 1.22 6.73 -2.38 -0.02 1.21 16 44 H 0.37 20.77 6.89 -92.71 -0.64 20.13 16 45 H 0.25 15.23 8.31 -92.71 -0.77 14.45 16 46 H 0.08 2.42 6.69 -2.39 -0.02 2.41 16 47 H 0.06 2.37 6.20 -2.39 -0.01 2.35 16 Total: -1.00 -76.30 363.77 3.30 -73.00 By element: Atomic # 1 Polarization: 28.41 SS G_CDS: 0.36 Total: 28.77 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: 6.35 Total: 5.14 kcal Atomic # 7 Polarization: -128.76 SS G_CDS: -5.38 Total: -134.13 kcal Atomic # 8 Polarization: -21.42 SS G_CDS: -0.06 Total: -21.48 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.70 kcal Total: -76.30 3.30 -73.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132793882.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.537 kcal (2) G-P(sol) polarization free energy of solvation -76.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds