Wall clock time and date at job start Fri Apr 10 2020 18:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30830 * 125.96038 * 2 1 4 4 C 1.33245 * 109.82877 * 179.97438 * 3 2 1 5 5 C 1.50701 * 125.52476 * 179.97438 * 4 3 2 6 6 C 1.50703 * 109.47003 * 90.00407 * 5 4 3 7 7 O 1.21283 * 119.99917 * 359.97438 * 6 5 4 8 8 N 1.34771 * 120.00170 * 179.97438 * 6 5 4 9 9 C 1.46926 * 120.63162 * 0.02562 * 8 6 5 10 10 C 1.53194 * 108.77810 * 126.41044 * 9 8 6 11 11 C 1.53039 * 109.31296 * 54.63472 * 10 9 8 12 12 H 1.09002 * 109.46304 * 58.65534 * 11 10 9 13 13 C 1.52998 * 109.45211 * 178.62445 * 11 10 9 14 14 C 1.53048 * 109.53789 * 298.63567 * 11 10 9 15 15 H 1.08992 * 109.50009 * 301.38170 * 14 11 10 16 16 C 1.53000 * 109.49591 * 181.31348 * 14 11 10 17 17 N 1.46499 * 109.46840 * 174.99920 * 16 14 11 18 18 C 1.36936 * 120.00002 * 180.02562 * 17 16 14 19 19 H 1.08004 * 120.00140 * 0.02562 * 18 17 16 20 20 C 1.38811 * 120.00367 * 180.02562 * 18 17 16 21 21 N 1.31619 * 119.99972 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00444 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46864 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47259 * 119.99588 * 22 20 18 25 25 H 1.48495 * 109.47205 * 239.99955 * 22 20 18 26 26 C 1.46924 * 120.63090 * 180.02562 * 8 6 5 27 27 N 1.30704 * 108.94746 * 0.26466 * 4 3 2 28 28 N 1.34435 * 125.96320 * 179.97438 * 2 1 3 29 29 H 0.97001 * 126.82297 * 0.02562 * 28 2 1 30 30 H 1.09004 * 109.46686 * 90.02529 * 1 2 3 31 31 H 1.08999 * 109.46800 * 210.02367 * 1 2 3 32 32 H 1.08994 * 109.47025 * 330.02607 * 1 2 3 33 33 H 1.08996 * 109.47505 * 330.00585 * 5 4 3 34 34 H 1.09000 * 109.47115 * 210.00149 * 5 4 3 35 35 H 1.08996 * 109.58425 * 6.62062 * 9 8 6 36 36 H 1.09003 * 109.58651 * 246.19576 * 9 8 6 37 37 H 1.09004 * 109.49424 * 294.68550 * 10 9 8 38 38 H 1.09000 * 109.50014 * 174.58892 * 10 9 8 39 39 H 1.08991 * 109.47291 * 180.02562 * 13 11 10 40 40 H 1.09000 * 109.46726 * 300.06023 * 13 11 10 41 41 H 1.09003 * 109.47085 * 60.05635 * 13 11 10 42 42 H 1.09002 * 109.47398 * 295.00246 * 16 14 11 43 43 H 1.09001 * 109.47194 * 55.00427 * 16 14 11 44 44 H 0.97000 * 120.00420 * 0.02562 * 17 16 14 45 45 H 0.96996 * 120.00586 * 180.02562 * 21 20 18 46 46 H 1.09004 * 109.58890 * 113.80483 * 26 8 6 47 47 H 1.08995 * 109.59190 * 353.37934 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5552 0.6888 0.0006 5 6 4.7372 1.6237 0.0002 6 6 5.1309 1.9362 1.4209 7 8 4.5123 1.4482 2.3429 8 7 6.1704 2.7579 1.6669 9 6 6.9291 3.3572 0.5606 10 6 6.9684 4.8762 0.7554 11 6 7.5260 5.1941 2.1446 12 1 8.5247 4.7682 2.2413 13 6 7.5987 6.7111 2.3296 14 6 6.6100 4.5935 3.2136 15 1 5.6052 5.0009 3.1023 16 6 7.1505 4.9397 4.6024 17 7 6.2116 4.4681 5.6233 18 6 6.4856 4.6677 6.9500 19 1 7.3937 5.1732 7.2438 20 6 5.5963 4.2204 7.9174 21 7 4.4894 3.6049 7.5595 22 14 5.9697 4.4934 9.7273 23 1 7.2664 5.2043 9.8634 24 1 4.8904 5.3104 10.3377 25 1 6.0496 3.1821 10.4194 26 6 6.5665 3.0716 3.0466 27 7 3.6195 -0.6167 -0.0048 28 7 2.2965 -1.0881 0.0005 29 1 2.0094 -2.0147 0.0006 30 1 -0.3633 -0.0005 -1.0277 31 1 -0.3633 -0.8898 0.5142 32 1 -0.3633 0.8902 0.5134 33 1 4.4702 2.5468 -0.5142 34 1 5.5744 1.1507 -0.5131 35 1 6.4419 3.1226 -0.3858 36 1 7.9452 2.9627 0.5585 37 1 5.9599 5.2805 0.6669 38 1 7.6084 5.3241 -0.0048 39 1 7.9963 6.9379 3.3188 40 1 8.2511 7.1390 1.5684 41 1 6.6000 7.1371 2.2334 42 1 8.1171 4.4570 4.7469 43 1 7.2676 6.0201 4.6878 44 1 5.3959 4.0144 5.3595 45 1 3.8677 3.2926 8.2354 46 1 7.5530 2.6538 3.2475 47 1 5.8401 2.6487 3.7405 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132830740.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:31 Heat of formation + Delta-G solvation = 52.043202 kcal Electronic energy + Delta-G solvation = -27447.238462 eV Core-core repulsion = 23666.704955 eV Total energy + Delta-G solvation = -3780.533507 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.25578 -40.09913 -37.89542 -34.92473 -33.80241 -33.61731 -32.48316 -31.84608 -30.39366 -29.60613 -28.22064 -27.59350 -25.42818 -23.40743 -23.14693 -21.78373 -21.17324 -20.89391 -19.74281 -18.81821 -17.98662 -17.25236 -16.85366 -15.92442 -15.55297 -15.43111 -14.79930 -14.51937 -14.37923 -13.97308 -13.80705 -13.75997 -13.39728 -13.33194 -13.09623 -13.02612 -12.93202 -12.56157 -12.51717 -12.11144 -11.93563 -11.79269 -11.66588 -11.44298 -10.94201 -10.84232 -10.74759 -10.54461 -10.26610 -10.21355 -10.12285 -10.09284 -9.88514 -9.70947 -9.54946 -9.37909 -8.79281 -8.41365 -6.81557 -5.65671 -2.95220 1.46585 2.47577 2.64972 2.80689 3.24256 3.49439 3.54141 3.57080 3.81062 4.36218 4.56515 4.61210 4.66608 4.75483 4.89547 4.96481 5.00732 5.10210 5.16557 5.22654 5.33484 5.41378 5.46711 5.53143 5.66233 5.71737 5.73362 5.78238 5.87005 5.97937 6.02407 6.07859 6.12020 6.25119 6.27929 6.30968 6.39036 6.51542 6.64499 6.72628 6.87960 6.90902 6.96899 7.56435 7.78536 7.98930 8.36785 8.51931 9.62858 10.21917 10.55843 11.56682 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.010457 B = 0.003460 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2676.878729 B = 8089.944845 C =10204.508151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.284 3.716 3 N -0.529 5.529 4 C 0.253 3.747 5 C -0.047 4.047 6 C 0.518 3.482 7 O -0.520 6.520 8 N -0.611 5.611 9 C 0.105 3.895 10 C -0.129 4.129 11 C -0.084 4.084 12 H 0.071 0.929 13 C -0.148 4.148 14 C -0.102 4.102 15 H 0.074 0.926 16 C 0.159 3.841 17 N -0.733 5.733 18 C -0.240 4.240 19 H 0.070 0.930 20 C -0.014 4.014 21 N -0.929 5.929 22 Si 0.905 3.095 23 H -0.281 1.281 24 H -0.292 1.292 25 H -0.292 1.292 26 C 0.122 3.878 27 N -0.306 5.306 28 N -0.483 5.483 29 H 0.439 0.561 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.100 0.900 33 H 0.120 0.880 34 H 0.115 0.885 35 H 0.081 0.919 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.064 0.936 40 H 0.048 0.952 41 H 0.053 0.947 42 H 0.018 0.982 43 H 0.027 0.973 44 H 0.385 0.615 45 H 0.254 0.746 46 H 0.065 0.935 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.034 -4.245 -23.782 24.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.005 3.995 3 N -0.258 5.258 4 C -0.031 4.031 5 C -0.089 4.089 6 C 0.304 3.696 7 O -0.394 6.394 8 N -0.345 5.345 9 C -0.018 4.018 10 C -0.168 4.168 11 C -0.103 4.103 12 H 0.089 0.911 13 C -0.205 4.205 14 C -0.121 4.121 15 H 0.093 0.907 16 C 0.031 3.969 17 N -0.378 5.378 18 C -0.371 4.371 19 H 0.088 0.912 20 C -0.210 4.210 21 N -0.578 5.578 22 Si 0.736 3.264 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 C 0.000 4.000 27 N -0.135 5.135 28 N -0.201 5.201 29 H 0.284 0.716 30 H 0.109 0.891 31 H 0.101 0.899 32 H 0.118 0.882 33 H 0.138 0.862 34 H 0.133 0.867 35 H 0.099 0.901 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.067 0.933 41 H 0.072 0.928 42 H 0.035 0.965 43 H 0.045 0.955 44 H 0.219 0.781 45 H 0.064 0.936 46 H 0.083 0.917 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.709 -4.486 -23.132 23.573 hybrid contribution -0.413 -0.654 0.998 1.263 sum -1.122 -5.141 -22.134 22.750 Atomic orbital electron populations 1.20395 0.83627 1.05287 1.04317 1.24365 0.96620 0.82744 0.95752 1.70300 1.01245 1.29537 1.24731 1.23257 0.92670 0.89709 0.97444 1.19938 0.93560 0.98601 0.96844 1.20112 0.79993 0.79126 0.90381 1.90801 1.51872 1.50858 1.45896 1.48113 1.31465 1.46983 1.07961 1.21775 0.96687 0.93844 0.89486 1.21994 1.02140 0.94969 0.97669 1.21088 0.99169 0.96252 0.93825 0.91101 1.21880 1.01668 0.94983 1.01969 1.21711 1.00002 0.94625 0.95785 0.90738 1.20724 0.93099 0.96906 0.86201 1.42437 1.23579 1.70017 1.01758 1.19244 1.03899 1.31100 0.82856 0.91217 1.24754 0.97051 1.01305 0.97871 1.69690 1.11626 1.44249 1.32192 0.86149 0.77252 0.77233 0.85755 1.20606 1.21934 1.21943 1.21712 1.01407 0.95435 0.81445 1.77944 0.96763 1.12208 1.26558 1.47910 1.04243 1.09970 1.57977 0.71575 0.89084 0.89852 0.88165 0.86173 0.86720 0.90056 0.91194 0.91315 0.90826 0.91671 0.93253 0.92760 0.96453 0.95538 0.78107 0.93592 0.91682 0.87904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.49 10.51 36.01 0.38 -0.11 16 2 C 0.28 3.26 8.24 -155.69 -1.28 1.97 16 3 N -0.53 -7.91 11.19 -8.16 -0.09 -8.00 16 4 C 0.25 3.78 6.63 -156.86 -1.04 2.74 16 5 C -0.05 -0.57 4.67 -29.03 -0.14 -0.71 16 6 C 0.52 8.51 7.69 -10.99 -0.08 8.42 16 7 O -0.52 -11.43 15.45 5.56 0.09 -11.35 16 8 N -0.61 -8.81 2.97 -172.79 -0.51 -9.32 16 9 C 0.11 1.01 6.34 -3.71 -0.02 0.99 16 10 C -0.13 -1.26 5.36 -26.61 -0.14 -1.41 16 11 C -0.08 -1.04 2.23 -90.58 -0.20 -1.24 16 12 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 13 C -0.15 -1.75 8.82 37.16 0.33 -1.42 16 14 C -0.10 -1.69 1.92 -90.51 -0.17 -1.87 16 15 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 16 C 0.16 3.24 5.41 -4.04 -0.02 3.22 16 17 N -0.73 -19.37 5.38 -59.91 -0.32 -19.69 16 18 C -0.24 -6.96 9.99 -15.06 -0.15 -7.11 16 19 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 20 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 21 N -0.93 -29.61 13.06 55.49 0.72 -28.89 16 22 Si 0.90 23.21 29.55 -169.99 -5.02 18.19 16 23 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.29 -7.51 7.11 56.52 0.40 -7.10 16 25 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 26 C 0.12 2.13 5.52 -3.72 -0.02 2.11 16 27 N -0.31 -4.50 12.80 32.42 0.41 -4.09 16 28 N -0.48 -5.37 7.45 32.62 0.24 -5.13 16 29 H 0.44 3.07 8.96 -182.33 -1.63 1.44 16 30 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.12 1.17 7.69 -51.93 -0.40 0.77 16 34 H 0.11 1.05 7.94 -51.93 -0.41 0.64 16 35 H 0.08 0.56 5.93 -51.93 -0.31 0.26 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.85 6.29 -51.93 -0.33 0.52 16 40 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.03 0.54 6.14 -51.93 -0.32 0.22 16 44 H 0.38 10.97 6.90 -40.82 -0.28 10.69 16 45 H 0.25 7.82 8.31 -40.82 -0.34 7.48 16 46 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 47 H 0.10 2.28 6.21 -51.93 -0.32 1.96 16 LS Contribution 377.91 15.07 5.69 5.69 Total: -1.00 -39.64 377.91 -10.08 -49.72 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: -8.62 Total: 7.78 kcal Atomic # 6 Polarization: 7.76 SS G_CDS: -2.67 Total: 5.09 kcal Atomic # 7 Polarization: -75.58 SS G_CDS: 0.46 Total: -75.13 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: 0.09 Total: -11.35 kcal Atomic # 14 Polarization: 23.21 SS G_CDS: -5.02 Total: 18.19 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -39.64 -10.08 -49.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132830740.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.762 kcal (2) G-P(sol) polarization free energy of solvation -39.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds